Wall clock time and date at job start Tue Mar 31 2020 06:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47217 * 2 1 4 4 C 1.53003 * 109.47040 * 184.99930 * 3 2 1 5 5 C 1.53003 * 109.47058 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47547 * 64.99705 * 3 2 1 7 7 C 1.52992 * 109.47115 * 59.99875 * 6 3 2 8 8 N 1.46503 * 109.46508 * 304.99433 * 3 2 1 9 9 C 1.34776 * 120.00206 * 299.99738 * 8 3 2 10 10 O 1.21584 * 119.99995 * 0.02562 * 9 8 3 11 11 C 1.47645 * 119.99781 * 180.02562 * 9 8 3 12 12 C 1.40015 * 119.89622 * 180.02562 * 11 9 8 13 13 C 1.36312 * 120.10903 * 180.25483 * 12 11 9 14 14 C 1.40889 * 119.89023 * 359.51799 * 13 12 11 15 15 C 1.41106 * 120.10458 * 180.23341 * 14 13 12 16 16 H 1.08007 * 120.00193 * 204.78818 * 15 14 13 17 17 C 1.40223 * 120.00235 * 24.78377 * 15 14 13 18 18 N 1.30654 * 119.99604 * 17.73952 * 17 15 14 19 19 Si 1.86796 * 120.00554 * 197.73682 * 17 15 14 20 20 H 1.48507 * 109.46968 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47125 * 119.99967 * 19 17 15 22 22 H 1.48490 * 109.47417 * 240.00293 * 19 17 15 23 23 C 1.40894 * 119.79412 * 0.49663 * 14 13 12 24 24 C 1.36312 * 119.88940 * 359.73804 * 23 14 13 25 25 H 1.09002 * 109.47470 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47478 * 300.00427 * 1 2 3 27 27 H 1.09005 * 109.46978 * 60.00213 * 1 2 3 28 28 H 1.08998 * 109.47478 * 239.99573 * 2 1 3 29 29 H 1.09000 * 109.46839 * 119.99324 * 2 1 3 30 30 H 1.08999 * 109.47101 * 299.99590 * 4 3 2 31 31 H 1.09005 * 109.47364 * 59.99807 * 4 3 2 32 32 H 1.08999 * 109.47152 * 299.99954 * 5 4 3 33 33 H 1.08997 * 109.47068 * 59.99646 * 5 4 3 34 34 H 1.09000 * 109.46934 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.47359 * 180.02562 * 6 3 2 36 36 H 1.09009 * 109.46766 * 300.00055 * 6 3 2 37 37 H 1.09000 * 109.47220 * 60.00191 * 7 6 3 38 38 H 1.09005 * 109.47343 * 179.97438 * 7 6 3 39 39 H 1.09003 * 109.47914 * 300.00442 * 7 6 3 40 40 H 0.97004 * 119.99715 * 120.00787 * 8 3 2 41 41 H 1.08001 * 119.94049 * 359.96968 * 12 11 9 42 42 H 1.08000 * 120.05443 * 179.71603 * 13 12 11 43 43 H 0.97000 * 119.99671 * 179.97438 * 18 17 15 44 44 H 1.07998 * 120.05459 * 179.70916 * 23 14 13 45 45 H 1.08002 * 119.94993 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 -0.1257 5 6 4.0748 2.8868 -0.1264 6 6 1.6352 2.1267 1.3072 7 6 2.2452 1.3701 2.4889 8 7 1.4559 2.1669 -1.1316 9 6 1.6793 1.7425 -2.3911 10 8 2.3653 0.7582 -2.5882 11 6 1.0911 2.4729 -3.5314 12 6 1.3242 2.0298 -4.8390 13 6 0.7875 2.7039 -5.8953 14 6 -0.0112 3.8422 -5.6691 15 6 -0.5731 4.5405 -6.7590 16 1 -0.8297 5.5846 -6.6569 17 6 -0.7983 3.8788 -7.9746 18 7 -0.8234 2.5731 -8.0128 19 14 -1.0623 4.8641 -9.5395 20 1 -0.9863 6.3146 -9.2299 21 1 -0.0112 4.5138 -10.5283 22 1 -2.3986 4.5474 -10.1043 23 6 -0.2427 4.2844 -4.3516 24 6 0.3022 3.6066 -3.3019 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5137 0.8901 30 1 3.9994 0.9053 0.7161 31 1 3.8533 0.9569 -1.0571 32 1 3.6402 3.4255 -0.9684 33 1 3.7864 3.3746 0.8048 34 1 5.1612 2.8881 -0.2154 35 1 1.9982 3.1544 1.3070 36 1 0.5488 2.1254 1.3967 37 1 3.3315 1.3714 2.3994 38 1 1.9572 1.8578 3.4203 39 1 1.8819 0.3424 2.4890 40 1 0.9084 2.9520 -0.9742 41 1 1.9340 1.1552 -5.0112 42 1 0.9717 2.3640 -6.9038 43 1 -0.9795 2.1154 -8.8536 44 1 -0.8505 5.1592 -4.1736 45 1 0.1257 3.9450 -2.2916 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270334962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:31 Heat of formation + Delta-G solvation = -56.596666 kcal Electronic energy + Delta-G solvation = -23524.601545 eV Core-core repulsion = 20312.135942 eV Total energy + Delta-G solvation = -3212.465603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.39423 -39.41438 -38.00859 -35.67419 -33.87620 -33.09820 -31.96834 -31.54777 -31.11046 -27.99705 -26.75747 -25.14792 -23.62110 -22.86650 -22.73823 -21.09063 -19.88044 -19.26457 -18.50801 -17.17899 -16.61728 -16.55310 -16.08081 -16.06890 -15.71245 -15.00560 -14.79145 -14.55711 -14.31391 -13.97224 -13.90376 -13.70629 -13.59160 -13.55704 -13.19785 -12.94154 -12.85398 -12.64910 -12.62378 -12.44629 -12.35380 -12.12958 -11.96795 -11.82504 -11.71096 -11.37216 -11.23221 -11.16622 -11.10186 -10.27567 -9.84141 -9.55371 -9.37861 -8.78213 -6.47185 0.49231 1.15919 1.37265 1.41884 1.54541 2.14297 2.22631 2.48800 2.83668 3.71363 3.73728 3.99090 3.99968 4.29154 4.32286 4.36382 4.41717 4.47413 4.53959 4.58600 4.61927 4.66463 4.82699 4.91604 4.95093 4.97694 5.02980 5.09866 5.11596 5.22442 5.27171 5.27565 5.29277 5.32053 5.35199 5.38801 5.48522 5.59469 5.66016 5.80875 5.86968 6.00461 6.04142 6.21846 6.57412 6.78055 6.86849 6.93490 7.62335 8.17139 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032650 B = 0.003472 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.375850 B = 8063.082102 C = 8147.072355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.180 3.820 4 C -0.135 4.135 5 C -0.144 4.144 6 C -0.123 4.123 7 C -0.149 4.149 8 N -0.712 5.712 9 C 0.577 3.423 10 O -0.595 6.595 11 C -0.290 4.290 12 C -0.052 4.052 13 C -0.203 4.203 14 C 0.100 3.900 15 C -0.475 4.475 16 H 0.091 0.909 17 C 0.033 3.967 18 N -0.806 5.806 19 Si 0.988 3.012 20 H -0.251 1.251 21 H -0.266 1.266 22 H -0.263 1.263 23 C -0.247 4.247 24 C -0.039 4.039 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.030 0.970 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.403 0.597 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.294 0.706 44 H 0.114 0.886 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 1.252 15.626 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.095 3.905 4 C -0.174 4.174 5 C -0.201 4.201 6 C -0.160 4.160 7 C -0.206 4.206 8 N -0.364 5.364 9 C 0.370 3.630 10 O -0.479 6.479 11 C -0.295 4.295 12 C -0.071 4.071 13 C -0.222 4.222 14 C 0.097 3.903 15 C -0.503 4.503 16 H 0.109 0.891 17 C -0.185 4.185 18 N -0.430 5.430 19 Si 0.808 3.192 20 H -0.174 1.174 21 H -0.190 1.190 22 H -0.188 1.188 23 C -0.266 4.266 24 C -0.058 4.058 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.240 0.760 41 H 0.107 0.893 42 H 0.119 0.881 43 H 0.105 0.895 44 H 0.132 0.868 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.791 0.359 15.380 15.636 hybrid contribution -0.341 0.231 -1.319 1.382 sum 2.451 0.590 14.061 14.285 Atomic orbital electron populations 1.21693 0.95461 1.01323 1.01549 1.21944 0.96529 0.96575 1.02255 1.20446 0.92475 0.91717 0.85868 1.21934 0.95045 0.98128 1.02248 1.21719 1.00390 0.96101 1.01868 1.21803 1.01867 1.00151 0.92225 1.21843 1.01252 1.00577 0.96977 1.45841 1.53751 1.32174 1.04593 1.18198 0.78694 0.82762 0.83358 1.90570 1.42238 1.29037 1.86072 1.19319 1.13945 1.03567 0.92632 1.20540 0.96750 0.97078 0.92761 1.20922 1.03071 1.00724 0.97528 1.18130 0.87919 0.90918 0.93323 1.20151 1.35478 0.98595 0.96034 0.89133 1.27013 0.91537 0.95768 1.04181 1.69817 1.32220 1.10727 1.30204 0.85057 0.78903 0.79538 0.75695 1.17439 1.19039 1.18778 1.20937 1.08593 1.04731 0.92329 1.20688 0.93797 0.92864 0.98413 0.93021 0.90624 0.95046 0.93704 0.89381 0.89641 0.93622 0.94719 0.90499 0.92939 0.90328 0.90539 0.92065 0.91009 0.92112 0.76040 0.89338 0.88074 0.89489 0.86779 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.45 71.98 0.68 -2.94 16 2 C -0.13 -3.60 4.46 30.59 0.14 -3.47 16 3 C 0.18 4.49 0.22 3.60 0.00 4.49 16 4 C -0.14 -3.57 4.43 30.60 0.14 -3.43 16 5 C -0.14 -3.41 9.40 71.98 0.68 -2.74 16 6 C -0.12 -2.09 4.51 30.59 0.14 -1.95 16 7 C -0.15 -2.01 9.21 71.98 0.66 -1.34 16 8 N -0.71 -21.53 3.36 -425.93 -1.43 -22.96 16 9 C 0.58 23.69 6.97 86.73 0.60 24.29 16 10 O -0.60 -27.93 12.58 -3.98 -0.05 -27.98 16 11 C -0.29 -13.27 5.89 -19.93 -0.12 -13.38 16 12 C -0.05 -2.67 9.52 22.25 0.21 -2.46 16 13 C -0.20 -10.98 8.63 22.47 0.19 -10.79 16 14 C 0.10 5.26 5.57 -21.28 -0.12 5.15 16 15 C -0.48 -24.26 9.04 23.46 0.21 -24.05 16 16 H 0.09 4.34 7.91 -2.91 -0.02 4.31 16 17 C 0.03 1.60 5.14 85.35 0.44 2.04 16 18 N -0.81 -41.05 10.96 21.87 0.24 -40.81 16 19 Si 0.99 35.98 29.60 68.60 2.03 38.01 16 20 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 21 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 22 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 23 C -0.25 -11.34 9.73 22.47 0.22 -11.13 16 24 C -0.04 -1.61 9.47 22.25 0.21 -1.39 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.07 1.50 6.56 -2.39 -0.02 1.48 16 27 H 0.03 0.95 7.29 -2.38 -0.02 0.94 16 28 H 0.04 1.58 6.32 -2.39 -0.02 1.56 16 29 H 0.09 1.89 6.17 -2.39 -0.01 1.88 16 30 H 0.09 1.84 6.43 -2.39 -0.02 1.83 16 31 H 0.04 1.60 6.16 -2.38 -0.01 1.58 16 32 H 0.03 0.97 7.60 -2.39 -0.02 0.96 16 33 H 0.08 1.41 6.43 -2.39 -0.02 1.40 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.22 6.43 -2.39 -0.02 1.21 16 36 H 0.08 1.21 6.57 -2.38 -0.02 1.20 16 37 H 0.06 0.82 6.43 -2.39 -0.02 0.81 16 38 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.06 0.82 6.32 -2.39 -0.02 0.81 16 40 H 0.40 10.45 6.47 -92.71 -0.60 9.85 16 41 H 0.09 4.61 7.63 -2.91 -0.02 4.59 16 42 H 0.10 5.71 6.16 -2.91 -0.02 5.69 16 43 H 0.29 13.42 8.29 -92.71 -0.77 12.65 16 44 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 45 H 0.13 4.17 6.37 -2.91 -0.02 4.16 16 Total: -1.00 -62.86 343.51 5.48 -57.39 By element: Atomic # 1 Polarization: 39.04 SS G_CDS: 0.40 Total: 39.45 kcal Atomic # 6 Polarization: -47.38 SS G_CDS: 4.29 Total: -43.09 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -1.19 Total: -63.77 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.05 Total: -27.98 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 2.03 Total: 38.01 kcal Total: -62.86 5.48 -57.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270334962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.792 kcal (2) G-P(sol) polarization free energy of solvation -62.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds