Wall clock time and date at job start Tue Mar 31 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46914 * 2 1 4 4 C 1.38233 * 120.00683 * 90.00029 * 3 2 1 5 5 C 1.38233 * 120.00252 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00115 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.00022 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47546 * 305.94244 * 7 6 5 9 9 C 1.52998 * 109.47315 * 185.93830 * 7 6 5 10 10 C 1.50705 * 109.47190 * 65.93920 * 7 6 5 11 11 O 1.21279 * 119.99879 * 355.58398 * 10 7 6 12 12 N 1.34777 * 120.00241 * 175.30019 * 10 7 6 13 13 C 1.46494 * 119.99993 * 180.02562 * 12 10 7 14 14 C 1.53005 * 109.46873 * 180.02562 * 13 12 10 15 15 C 1.50705 * 109.46733 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00626 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99796 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99821 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99988 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47341 * 89.99547 * 19 17 15 21 21 H 1.48498 * 109.46966 * 209.99692 * 19 17 15 22 22 H 1.48498 * 109.46909 * 329.99485 * 19 17 15 23 23 C 1.38234 * 119.99991 * 0.24974 * 6 5 4 24 24 C 1.38235 * 119.99988 * 359.49838 * 23 6 5 25 25 H 1.08996 * 109.46948 * 299.99904 * 1 2 3 26 26 H 1.09000 * 109.47278 * 60.00486 * 1 2 3 27 27 H 1.09000 * 109.46733 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46857 * 239.99565 * 2 1 3 29 29 H 1.08994 * 109.46882 * 119.99632 * 2 1 3 30 30 H 1.08007 * 119.99475 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.99732 * 179.97438 * 5 4 3 32 32 H 1.08990 * 109.47815 * 180.02562 * 8 7 6 33 33 H 1.09008 * 109.46701 * 300.00124 * 8 7 6 34 34 H 1.09003 * 109.47221 * 59.99597 * 8 7 6 35 35 H 1.08996 * 109.47340 * 300.00242 * 9 7 6 36 36 H 1.09008 * 109.47104 * 60.00411 * 9 7 6 37 37 H 1.09000 * 109.47314 * 179.97438 * 9 7 6 38 38 H 0.96999 * 119.99430 * 0.02562 * 12 10 7 39 39 H 1.09000 * 109.47675 * 300.00599 * 13 12 10 40 40 H 1.09005 * 109.47337 * 60.00431 * 13 12 10 41 41 H 1.09000 * 109.46726 * 299.99610 * 14 13 12 42 42 H 1.08989 * 109.47107 * 60.00211 * 14 13 12 43 43 H 0.97004 * 119.99347 * 180.02562 * 18 17 15 44 44 H 1.07994 * 120.00155 * 179.72429 * 23 6 5 45 45 H 1.08000 * 120.00523 * 180.24988 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0726 1.1970 5 6 2.7240 3.3757 1.1969 6 6 2.9543 4.0273 -0.0002 7 6 3.4566 5.4480 -0.0003 8 6 2.5256 6.3183 0.8463 9 6 3.4858 5.9786 -1.4351 10 6 4.8472 5.4893 0.5789 11 8 5.3472 4.4798 1.0282 12 7 5.5376 6.6468 0.5925 13 6 6.8896 6.6867 1.1551 14 6 7.4446 8.1085 1.0484 15 6 8.8357 8.1494 1.6266 16 1 9.2795 7.2513 2.0301 17 6 9.5416 9.3337 1.6413 18 7 9.0010 10.4276 1.1503 19 14 11.2662 9.3843 2.3573 20 1 12.2550 9.0963 1.2875 21 1 11.5277 10.7320 2.9234 22 1 11.3867 8.3648 3.4303 23 6 2.7185 3.3775 -1.1973 24 6 2.2622 2.0726 -1.1973 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0824 1.5636 2.1324 31 1 2.9036 3.8849 2.1322 32 1 2.8885 7.3459 0.8459 33 1 1.5197 6.2884 0.4274 34 1 2.5047 5.9403 1.8685 35 1 4.1491 5.3587 -2.0382 36 1 2.4799 5.9488 -1.8541 37 1 3.8487 7.0064 -1.4351 38 1 5.1391 7.4533 0.2297 39 1 6.8563 6.3876 2.2027 40 1 7.5336 6.0025 0.6023 41 1 7.4780 8.4078 0.0008 42 1 6.8007 8.7923 1.6013 43 1 9.4978 11.2607 1.1603 44 1 2.8942 3.8880 -2.1326 45 1 2.0818 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272995247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:12 Heat of formation + Delta-G solvation = -44.922948 kcal Electronic energy + Delta-G solvation = -22577.786077 eV Core-core repulsion = 19365.826684 eV Total energy + Delta-G solvation = -3211.959393 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.48253 -38.77035 -35.80382 -34.83739 -33.38700 -32.66064 -31.05329 -29.64580 -28.58657 -27.49339 -25.05158 -24.36542 -22.83387 -22.26337 -21.15794 -20.66873 -19.13930 -16.96194 -16.54537 -16.17833 -15.53777 -15.35935 -14.85097 -14.57968 -14.47040 -14.20316 -13.87196 -13.56925 -13.48526 -13.40406 -13.17123 -12.55146 -12.40452 -12.30221 -12.24428 -12.10032 -11.83334 -11.62362 -11.42634 -11.21481 -11.19353 -11.03292 -10.76172 -10.64911 -10.62731 -10.31804 -9.74212 -9.41675 -9.13742 -8.82530 -8.52833 -8.47450 -8.33751 -6.09932 -4.12597 1.35151 1.48612 3.04055 3.29059 3.35100 3.39120 3.57768 3.95566 4.41623 4.46032 4.67180 4.70289 4.82993 4.91300 5.02819 5.13394 5.15646 5.19153 5.27120 5.35741 5.45035 5.47569 5.54886 5.64564 5.66306 5.70854 5.75600 5.80606 5.93030 5.99908 6.07722 6.09724 6.12546 6.35475 6.36187 6.47996 6.62408 6.68887 6.74421 6.94698 7.04914 7.51528 7.61403 7.88471 8.04236 8.27848 8.68882 8.93419 9.52194 11.01621 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033821 B = 0.002779 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.680692 B =10073.714570 C =10450.943340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.120 4.120 5 C -0.083 4.083 6 C -0.058 4.058 7 C -0.045 4.045 8 C -0.137 4.137 9 C -0.144 4.144 10 C 0.515 3.485 11 O -0.541 6.541 12 N -0.720 5.720 13 C 0.122 3.878 14 C 0.013 3.987 15 C -0.521 4.521 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.114 4.114 24 C -0.122 4.122 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.396 0.604 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.262 0.738 44 H 0.125 0.875 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.075 -13.922 -4.882 24.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.138 4.138 5 C -0.101 4.101 6 C -0.058 4.058 7 C -0.049 4.049 8 C -0.195 4.195 9 C -0.201 4.201 10 C 0.300 3.700 11 O -0.418 6.418 12 N -0.370 5.370 13 C 0.000 4.000 14 C -0.024 4.024 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.132 4.132 24 C -0.140 4.140 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.230 0.770 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.071 0.929 44 H 0.143 0.857 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.647 -14.450 -4.569 24.029 hybrid contribution 0.918 0.605 0.211 1.119 sum -17.729 -13.845 -4.358 22.913 Atomic orbital electron populations 1.21743 0.94903 1.01455 1.02175 1.20521 0.95996 0.92952 1.02685 1.19839 0.99619 0.96009 0.93313 1.20938 1.00631 0.94830 0.97361 1.20898 0.96993 0.94555 0.97672 1.19302 0.98888 0.94139 0.93508 1.19744 0.93618 0.93871 0.97617 1.21871 0.98847 0.99134 0.99614 1.21959 1.02768 1.01559 0.93827 1.20273 0.86782 0.83753 0.79231 1.90685 1.70249 1.33822 1.47065 1.46310 1.18135 1.10726 1.61833 1.21711 0.79733 1.01282 0.97283 1.19319 0.96225 0.89048 0.97854 1.21054 0.99568 0.95331 1.40011 0.92287 1.25001 0.98409 0.95575 0.95336 1.69960 1.37675 0.99863 1.45807 0.86512 0.84296 0.77353 0.79404 1.20554 1.21161 1.19743 1.21101 0.99618 0.94767 0.97671 1.20910 1.01000 0.94793 0.97285 0.92588 0.92617 0.92608 0.91226 0.91185 0.86419 0.86355 0.91408 0.91402 0.91877 0.91663 0.91236 0.91423 0.76988 0.92660 0.92658 0.95975 0.95957 0.92859 0.85734 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.90 37.16 0.37 -0.68 16 2 C -0.08 -0.71 6.06 -27.88 -0.17 -0.88 16 3 C -0.09 -0.98 5.13 -104.62 -0.54 -1.51 16 4 C -0.12 -1.45 9.70 -39.59 -0.38 -1.83 16 5 C -0.08 -1.13 8.15 -39.58 -0.32 -1.45 16 6 C -0.06 -0.78 4.33 -104.63 -0.45 -1.23 16 7 C -0.05 -0.58 0.72 -156.81 -0.11 -0.70 16 8 C -0.14 -1.49 8.17 37.16 0.30 -1.19 16 9 C -0.14 -1.53 7.00 37.16 0.26 -1.27 16 10 C 0.52 8.88 6.40 -10.98 -0.07 8.80 16 11 O -0.54 -11.42 15.33 5.56 0.09 -11.33 16 12 N -0.72 -12.64 5.38 -60.29 -0.32 -12.97 16 13 C 0.12 2.63 5.61 -4.04 -0.02 2.60 16 14 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 15 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 19 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.11 -1.37 8.99 -39.58 -0.36 -1.73 16 24 C -0.12 -1.36 9.70 -39.58 -0.38 -1.74 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.12 1.62 7.23 -52.49 -0.38 1.24 16 32 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 33 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.06 0.71 7.08 -51.93 -0.37 0.34 16 35 H 0.06 0.73 7.25 -51.93 -0.38 0.35 16 36 H 0.07 0.60 7.78 -51.92 -0.40 0.19 16 37 H 0.07 0.68 7.31 -51.93 -0.38 0.30 16 38 H 0.40 6.04 7.37 -40.82 -0.30 5.74 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.12 1.28 5.91 -52.49 -0.31 0.97 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -32.03 365.68 -8.98 -41.01 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.54 Total: 2.60 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -2.43 Total: -15.89 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.41 Total: -38.33 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.03 -8.98 -41.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272995247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.912 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds