Wall clock time and date at job start Tue Mar 31 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46914 * 2 1 4 4 C 1.38233 * 120.00683 * 90.00029 * 3 2 1 5 5 C 1.38233 * 120.00252 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00115 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.00022 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47546 * 305.94244 * 7 6 5 9 9 C 1.52998 * 109.47315 * 185.93830 * 7 6 5 10 10 C 1.50705 * 109.47190 * 65.93920 * 7 6 5 11 11 O 1.21279 * 119.99879 * 355.58398 * 10 7 6 12 12 N 1.34777 * 120.00241 * 175.30019 * 10 7 6 13 13 C 1.46494 * 119.99993 * 180.02562 * 12 10 7 14 14 C 1.53005 * 109.46873 * 180.02562 * 13 12 10 15 15 C 1.50705 * 109.46733 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00626 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99796 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99821 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99988 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47341 * 89.99547 * 19 17 15 21 21 H 1.48498 * 109.46966 * 209.99692 * 19 17 15 22 22 H 1.48498 * 109.46909 * 329.99485 * 19 17 15 23 23 C 1.38234 * 119.99991 * 0.24974 * 6 5 4 24 24 C 1.38235 * 119.99988 * 359.49838 * 23 6 5 25 25 H 1.08996 * 109.46948 * 299.99904 * 1 2 3 26 26 H 1.09000 * 109.47278 * 60.00486 * 1 2 3 27 27 H 1.09000 * 109.46733 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46857 * 239.99565 * 2 1 3 29 29 H 1.08994 * 109.46882 * 119.99632 * 2 1 3 30 30 H 1.08007 * 119.99475 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.99732 * 179.97438 * 5 4 3 32 32 H 1.08990 * 109.47815 * 180.02562 * 8 7 6 33 33 H 1.09008 * 109.46701 * 300.00124 * 8 7 6 34 34 H 1.09003 * 109.47221 * 59.99597 * 8 7 6 35 35 H 1.08996 * 109.47340 * 300.00242 * 9 7 6 36 36 H 1.09008 * 109.47104 * 60.00411 * 9 7 6 37 37 H 1.09000 * 109.47314 * 179.97438 * 9 7 6 38 38 H 0.96999 * 119.99430 * 0.02562 * 12 10 7 39 39 H 1.09000 * 109.47675 * 300.00599 * 13 12 10 40 40 H 1.09005 * 109.47337 * 60.00431 * 13 12 10 41 41 H 1.09000 * 109.46726 * 299.99610 * 14 13 12 42 42 H 1.08989 * 109.47107 * 60.00211 * 14 13 12 43 43 H 0.97004 * 119.99347 * 180.02562 * 18 17 15 44 44 H 1.07994 * 120.00155 * 179.72429 * 23 6 5 45 45 H 1.08000 * 120.00523 * 180.24988 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0726 1.1970 5 6 2.7240 3.3757 1.1969 6 6 2.9543 4.0273 -0.0002 7 6 3.4566 5.4480 -0.0003 8 6 2.5256 6.3183 0.8463 9 6 3.4858 5.9786 -1.4351 10 6 4.8472 5.4893 0.5789 11 8 5.3472 4.4798 1.0282 12 7 5.5376 6.6468 0.5925 13 6 6.8896 6.6867 1.1551 14 6 7.4446 8.1085 1.0484 15 6 8.8357 8.1494 1.6266 16 1 9.2795 7.2513 2.0301 17 6 9.5416 9.3337 1.6413 18 7 9.0010 10.4276 1.1503 19 14 11.2662 9.3843 2.3573 20 1 12.2550 9.0963 1.2875 21 1 11.5277 10.7320 2.9234 22 1 11.3867 8.3648 3.4303 23 6 2.7185 3.3775 -1.1973 24 6 2.2622 2.0726 -1.1973 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0824 1.5636 2.1324 31 1 2.9036 3.8849 2.1322 32 1 2.8885 7.3459 0.8459 33 1 1.5197 6.2884 0.4274 34 1 2.5047 5.9403 1.8685 35 1 4.1491 5.3587 -2.0382 36 1 2.4799 5.9488 -1.8541 37 1 3.8487 7.0064 -1.4351 38 1 5.1391 7.4533 0.2297 39 1 6.8563 6.3876 2.2027 40 1 7.5336 6.0025 0.6023 41 1 7.4780 8.4078 0.0008 42 1 6.8007 8.7923 1.6013 43 1 9.4978 11.2607 1.1603 44 1 2.8942 3.8880 -2.1326 45 1 2.0818 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272995247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:12 Heat of formation + Delta-G solvation = -62.513705 kcal Electronic energy + Delta-G solvation = -22578.548870 eV Core-core repulsion = 19365.826684 eV Total energy + Delta-G solvation = -3212.722185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.63160 -39.90387 -36.89448 -36.51506 -34.88823 -33.97322 -31.95617 -31.44476 -29.48766 -28.34888 -26.92156 -25.26843 -24.01666 -23.22490 -22.78795 -21.80612 -20.37781 -18.53638 -18.10705 -17.40516 -16.65540 -16.55003 -16.45822 -16.18779 -15.64579 -15.12095 -14.97556 -14.84648 -14.54046 -14.31279 -14.24350 -14.17483 -13.46608 -13.34307 -13.26519 -13.19172 -12.95101 -12.93787 -12.67926 -12.54246 -12.48634 -12.24766 -12.18802 -11.89762 -11.68730 -11.57038 -11.50778 -11.45666 -10.65639 -10.61483 -10.01684 -9.75063 -9.39469 -8.25349 -6.35705 0.42758 0.56357 1.40618 1.40938 1.52452 1.66251 2.24448 2.43914 2.92923 3.09176 3.49364 3.75021 3.89650 3.95466 4.06351 4.08154 4.17864 4.39075 4.46920 4.48179 4.53204 4.57657 4.66412 4.73409 4.75101 4.82091 4.83063 4.83746 4.90001 5.07043 5.10654 5.14823 5.20413 5.21985 5.26946 5.29960 5.40673 5.48366 5.56756 5.57443 5.74400 5.76127 5.77598 6.15051 6.16079 6.63164 6.77087 7.28392 7.33439 8.86335 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033821 B = 0.002779 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.680692 B =10073.714570 C =10450.943340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.132 4.132 5 C -0.104 4.104 6 C -0.078 4.078 7 C -0.036 4.036 8 C -0.135 4.135 9 C -0.143 4.143 10 C 0.513 3.487 11 O -0.583 6.583 12 N -0.714 5.714 13 C 0.142 3.858 14 C 0.024 3.976 15 C -0.547 4.547 16 H 0.056 0.944 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.964 3.036 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.120 4.120 24 C -0.127 4.127 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.409 0.591 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.266 0.734 44 H 0.143 0.857 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.952 -14.614 -5.839 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.150 4.150 5 C -0.122 4.122 6 C -0.079 4.079 7 C -0.039 4.039 8 C -0.193 4.193 9 C -0.200 4.200 10 C 0.300 3.700 11 O -0.463 6.463 12 N -0.365 5.365 13 C 0.018 3.982 14 C -0.013 4.013 15 C -0.586 4.586 16 H 0.074 0.926 17 C -0.191 4.191 18 N -0.564 5.564 19 Si 0.789 3.211 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.192 1.192 23 C -0.138 4.138 24 C -0.144 4.144 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.146 0.854 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.245 0.755 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.075 0.925 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.553 -15.132 -5.539 25.337 hybrid contribution 1.152 0.765 0.507 1.473 sum -18.401 -14.366 -5.033 23.881 Atomic orbital electron populations 1.21716 0.93829 1.02410 1.01969 1.20579 0.96838 0.91277 1.03387 1.20193 0.98655 0.97227 0.92919 1.21157 1.00755 0.94528 0.98564 1.20971 0.98229 0.95480 0.97518 1.19447 0.99918 0.94504 0.94014 1.19726 0.90506 0.94641 0.98997 1.21896 0.99632 0.98864 0.98876 1.22006 1.04415 1.01558 0.92017 1.21130 0.88213 0.82527 0.78084 1.90659 1.71606 1.35205 1.48800 1.46128 1.16765 1.11845 1.61783 1.21197 0.81624 0.98768 0.96625 1.19119 0.95208 0.90515 0.96461 1.21453 1.01081 0.95548 1.40501 0.92550 1.25862 1.02561 0.95143 0.95564 1.70056 1.39343 1.00428 1.46588 0.85457 0.79236 0.77630 0.78802 1.19734 1.20376 1.19228 1.21375 0.99267 0.95291 0.97829 1.21263 1.00211 0.94622 0.98342 0.93105 0.92524 0.91089 0.90140 0.90903 0.85352 0.87655 0.90724 0.89074 0.92915 0.92264 0.88477 0.90779 0.75466 0.93883 0.93909 0.97222 0.97213 0.92501 0.83962 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.90 71.98 0.71 -1.03 16 2 C -0.08 -1.25 6.06 29.85 0.18 -1.07 16 3 C -0.09 -1.87 5.13 -19.86 -0.10 -1.98 16 4 C -0.13 -3.17 9.70 22.27 0.22 -2.95 16 5 C -0.10 -2.87 8.15 22.27 0.18 -2.69 16 6 C -0.08 -2.06 4.33 -19.87 -0.09 -2.15 16 7 C -0.04 -0.89 0.72 -53.68 -0.04 -0.93 16 8 C -0.14 -2.79 8.17 71.98 0.59 -2.20 16 9 C -0.14 -2.76 7.00 71.98 0.50 -2.25 16 10 C 0.51 17.87 6.40 87.66 0.56 18.43 16 11 O -0.58 -25.29 15.33 -3.03 -0.05 -25.34 16 12 N -0.71 -25.34 5.38 -463.05 -2.49 -27.83 16 13 C 0.14 6.25 5.61 86.38 0.48 6.74 16 14 C 0.02 1.24 5.09 29.85 0.15 1.39 16 15 C -0.55 -30.90 9.11 25.60 0.23 -30.66 16 16 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 17 C 0.01 0.43 5.46 84.65 0.46 0.89 16 18 N -0.92 -54.18 13.29 21.45 0.28 -53.90 16 19 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 C -0.12 -2.70 8.99 22.27 0.20 -2.50 16 24 C -0.13 -2.57 9.70 22.27 0.22 -2.36 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 29 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 30 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.11 3.05 7.23 -2.91 -0.02 3.03 16 32 H 0.07 1.42 7.90 -2.39 -0.02 1.40 16 33 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.05 1.19 7.08 -2.39 -0.02 1.17 16 35 H 0.06 1.22 7.25 -2.39 -0.02 1.20 16 36 H 0.10 1.36 7.78 -2.38 -0.02 1.34 16 37 H 0.07 1.33 7.31 -2.39 -0.02 1.31 16 38 H 0.41 12.37 7.37 -92.71 -0.68 11.69 16 39 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.04 1.98 8.14 -2.38 -0.02 1.97 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.14 2.58 5.91 -2.91 -0.02 2.56 16 45 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -69.24 365.68 4.52 -64.73 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.28 Total: 21.74 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 4.47 Total: -25.31 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -2.21 Total: -81.73 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.05 Total: -25.34 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -69.24 4.52 -64.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272995247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.213 kcal (2) G-P(sol) polarization free energy of solvation -69.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds