Wall clock time and date at job start Tue Mar 31 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.53006 * 109.47008 * 299.98123 * 7 6 5 11 11 C 1.50704 * 109.46855 * 185.00302 * 10 7 6 12 12 O 1.21277 * 120.00348 * 359.97438 * 11 10 7 13 13 N 1.34776 * 119.99751 * 179.97438 * 11 10 7 14 14 C 1.46499 * 119.99646 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46750 * 180.02562 * 14 13 11 16 16 C 1.50704 * 109.46855 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00064 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99592 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00478 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99579 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47261 * 59.99709 * 20 18 16 22 22 H 1.48507 * 109.46846 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47263 * 299.99296 * 20 18 16 24 24 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 25 25 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 33 33 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 34 34 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 35 35 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 36 36 H 1.08999 * 109.46955 * 304.99332 * 10 7 6 37 37 H 1.08993 * 109.47689 * 64.99776 * 10 7 6 38 38 H 0.96997 * 120.00295 * 359.97438 * 13 11 10 39 39 H 1.08998 * 109.47298 * 299.99310 * 14 13 11 40 40 H 1.08995 * 109.47677 * 59.99860 * 14 13 11 41 41 H 1.08999 * 109.46955 * 299.99279 * 15 14 13 42 42 H 1.08993 * 109.47689 * 59.99722 * 15 14 13 43 43 H 0.96997 * 120.00453 * 180.02562 * 19 18 16 44 44 H 1.08002 * 120.00166 * 179.97438 * 24 6 5 45 45 H 1.07996 * 120.00605 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.8036 5.5137 -0.7205 11 6 5.3631 6.9090 -0.6140 12 8 4.7442 7.7669 -0.0208 13 7 6.5512 7.2035 -1.1781 14 6 7.0947 8.5600 -1.0750 15 6 8.4430 8.6252 -1.7954 16 6 9.0024 10.0205 -1.6889 17 1 8.4513 10.7844 -1.1607 18 6 10.2174 10.3220 -2.2668 19 7 10.8884 9.3919 -2.9104 20 14 10.9105 12.0517 -2.1354 21 1 11.0966 12.4031 -0.7046 22 1 12.2192 12.1149 -2.8344 23 1 9.9671 13.0120 -2.7623 24 6 2.7234 3.3758 1.1971 25 6 2.2627 2.0725 1.1971 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0926 1.5598 -2.1325 32 1 2.9045 3.8845 -2.1325 33 1 1.4869 6.2984 -0.2090 34 1 2.8103 7.3727 -0.7227 35 1 2.3273 6.0019 -1.7499 36 1 5.4959 4.8087 -0.2603 37 1 4.6673 5.2560 -1.7707 38 1 7.0463 6.5173 -1.6522 39 1 6.4026 9.2648 -1.5360 40 1 7.2305 8.8183 -0.0249 41 1 9.1354 7.9205 -1.3349 42 1 8.3068 8.3671 -2.8455 43 1 11.7433 9.6039 -3.3166 44 1 2.9031 3.8851 2.1324 45 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273027668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:49 Heat of formation + Delta-G solvation = -70.064275 kcal Electronic energy + Delta-G solvation = -21750.095048 eV Core-core repulsion = 18537.045445 eV Total energy + Delta-G solvation = -3213.049603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.09587 -40.20645 -37.02488 -36.28698 -34.80546 -33.88784 -31.77445 -31.76833 -29.68338 -28.75021 -26.53875 -25.11989 -23.66000 -23.14510 -22.46453 -21.48377 -20.59358 -18.62275 -18.09321 -16.93267 -16.92757 -16.54720 -16.47376 -16.23082 -15.88021 -15.29785 -14.93706 -14.59027 -14.55818 -14.42388 -14.27495 -14.21198 -13.92239 -13.53596 -13.24298 -13.09025 -12.91610 -12.73634 -12.54804 -12.34930 -12.28151 -12.16211 -12.04373 -11.79917 -11.64881 -11.57428 -11.47707 -11.45938 -10.67411 -10.60316 -9.96108 -9.76126 -9.36097 -8.24495 -6.35147 0.46177 0.56165 1.41207 1.43467 1.51509 1.71717 2.29476 2.47228 2.88846 3.09954 3.67402 3.79231 3.94655 4.06044 4.13118 4.20775 4.21754 4.38263 4.48619 4.49788 4.55070 4.57656 4.63828 4.68277 4.70066 4.75753 4.85715 4.86195 5.02930 5.09917 5.11848 5.20149 5.21587 5.29392 5.30677 5.39576 5.42257 5.52854 5.58188 5.61305 5.78707 5.78933 5.81127 6.16129 6.17991 6.68073 6.78030 7.34090 7.34708 8.87010 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.041482 B = 0.002216 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.822221 B =12631.541754 C =12939.913980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.123 4.123 5 C -0.117 4.117 6 C -0.086 4.086 7 C -0.029 4.029 8 H 0.069 0.931 9 C -0.144 4.144 10 C -0.123 4.123 11 C 0.504 3.496 12 O -0.583 6.583 13 N -0.721 5.721 14 C 0.141 3.859 15 C 0.022 3.978 16 C -0.549 4.549 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.926 5.926 20 Si 0.965 3.035 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.269 1.269 24 C -0.125 4.125 25 C -0.124 4.124 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.410 0.590 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.008 0.992 42 H 0.009 0.991 43 H 0.266 0.734 44 H 0.124 0.876 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.263 -20.393 4.269 28.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.141 4.141 5 C -0.135 4.135 6 C -0.086 4.086 7 C -0.048 4.048 8 H 0.088 0.912 9 C -0.201 4.201 10 C -0.163 4.163 11 C 0.293 3.707 12 O -0.464 6.464 13 N -0.372 5.372 14 C 0.017 3.983 15 C -0.015 4.015 16 C -0.587 4.587 17 H 0.076 0.924 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.789 3.211 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.194 1.194 24 C -0.143 4.143 25 C -0.142 4.142 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.246 0.754 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.075 0.925 44 H 0.142 0.858 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.533 -19.812 4.586 28.197 hybrid contribution 0.952 0.862 -0.186 1.298 sum -18.581 -18.950 4.400 26.902 Atomic orbital electron populations 1.21732 0.94393 1.02296 1.01797 1.20578 0.96395 0.91609 1.03531 1.20175 0.98897 0.97205 0.93089 1.21252 0.99760 0.94765 0.98327 1.21168 0.99473 0.95032 0.97822 1.19812 1.00015 0.94941 0.93851 1.19753 0.93190 0.91615 1.00218 0.91242 1.21892 0.98278 0.99777 1.00187 1.21769 0.97762 0.92121 1.04611 1.21334 0.80342 0.91571 0.77496 1.90626 1.60044 1.51429 1.44322 1.46217 1.21503 1.13246 1.56263 1.21178 0.95234 0.82594 0.99306 1.19132 0.90876 0.96524 0.94967 1.21451 1.05130 0.96854 1.35285 0.92385 1.25877 0.97148 1.01669 0.94514 1.70044 1.15107 1.35137 1.36231 0.85503 0.77567 0.79352 0.78646 1.19392 1.20521 1.19352 1.21242 0.99976 0.95328 0.97779 1.21211 0.99929 0.94644 0.98401 0.91239 0.93074 0.92967 0.90438 0.90301 0.84646 0.85087 0.92626 0.92865 0.91845 0.87220 0.86670 0.75418 0.93717 0.93811 0.97386 0.97303 0.92522 0.85780 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.89 71.98 0.71 -0.74 16 2 C -0.08 -0.91 6.07 29.85 0.18 -0.73 16 3 C -0.09 -1.44 5.13 -19.87 -0.10 -1.55 16 4 C -0.12 -1.95 9.70 22.27 0.22 -1.73 16 5 C -0.12 -2.05 8.76 22.27 0.20 -1.86 16 6 C -0.09 -1.70 4.78 -19.87 -0.09 -1.80 16 7 C -0.03 -0.65 2.21 -11.54 -0.03 -0.68 16 8 H 0.07 1.79 7.69 -2.39 -0.02 1.77 16 9 C -0.14 -3.44 8.75 71.98 0.63 -2.81 16 10 C -0.12 -2.74 4.91 29.85 0.15 -2.59 16 11 C 0.50 16.28 7.55 87.66 0.66 16.94 16 12 O -0.58 -23.26 13.96 -3.02 -0.04 -23.30 16 13 N -0.72 -24.71 5.56 -463.06 -2.57 -27.28 16 14 C 0.14 6.10 5.61 86.38 0.48 6.58 16 15 C 0.02 1.14 5.09 29.85 0.15 1.29 16 16 C -0.55 -30.88 9.11 25.60 0.23 -30.65 16 17 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 18 C 0.01 0.38 5.46 84.66 0.46 0.84 16 19 N -0.93 -54.41 13.29 21.45 0.28 -54.12 16 20 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 24 C -0.13 -2.37 9.67 22.27 0.22 -2.16 16 25 C -0.12 -2.05 9.70 22.27 0.22 -1.83 16 26 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 30 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 31 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.13 1.97 7.16 -2.91 -0.02 1.95 16 33 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.05 1.59 5.95 -2.39 -0.01 1.58 16 35 H 0.06 1.30 7.39 -2.39 -0.02 1.28 16 36 H 0.11 2.10 8.14 -2.39 -0.02 2.09 16 37 H 0.12 2.06 7.57 -2.39 -0.02 2.05 16 38 H 0.41 11.94 8.47 -92.71 -0.79 11.15 16 39 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.12 2.17 7.95 -2.91 -0.02 2.15 16 45 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -66.91 369.86 4.15 -62.76 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.17 Total: 19.61 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 4.28 Total: -23.46 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -2.29 Total: -81.40 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.04 Total: -23.30 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -66.91 4.15 -62.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273027668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.307 kcal (2) G-P(sol) polarization free energy of solvation -66.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds