Wall clock time and date at job start Tue Mar 31 2020 06:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46998 * 2 1 4 4 C 1.53008 * 109.47142 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47135 * 180.02562 * 4 3 2 6 6 C 1.38226 * 120.00049 * 89.99771 * 5 4 3 7 7 C 1.38243 * 119.99917 * 179.97438 * 6 5 4 8 8 C 1.38229 * 120.00123 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00371 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.46617 * 90.00212 * 9 8 7 11 11 O 1.21283 * 120.00521 * 359.73030 * 10 9 8 12 12 N 1.34784 * 119.99774 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99893 * 179.72962 * 12 10 9 14 14 C 1.53003 * 109.46708 * 180.02562 * 13 12 10 15 15 C 1.50708 * 109.46949 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99690 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00050 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99915 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00185 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46940 * 60.00393 * 19 17 15 21 21 H 1.48496 * 109.47341 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47121 * 300.00922 * 19 17 15 23 23 C 1.38239 * 119.99641 * 0.26201 * 8 7 6 24 24 C 1.38231 * 120.00184 * 359.48931 * 23 8 7 25 25 H 1.08998 * 109.47353 * 300.00224 * 1 2 3 26 26 H 1.09001 * 109.47005 * 60.00205 * 1 2 3 27 27 H 1.08996 * 109.47254 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47353 * 239.99776 * 2 1 3 29 29 H 1.08998 * 109.47324 * 119.99375 * 2 1 3 30 30 H 1.08998 * 109.47251 * 59.99714 * 3 2 1 31 31 H 1.09001 * 109.47075 * 299.99752 * 3 2 1 32 32 H 1.08993 * 109.46895 * 59.99965 * 4 3 2 33 33 H 1.09001 * 109.46930 * 299.99837 * 4 3 2 34 34 H 1.08003 * 120.00662 * 0.02562 * 6 5 4 35 35 H 1.08005 * 119.99822 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46798 * 330.01103 * 9 8 7 37 37 H 1.08993 * 109.47546 * 210.00655 * 9 8 7 38 38 H 0.97005 * 119.99846 * 359.72750 * 12 10 9 39 39 H 1.08998 * 109.47134 * 299.99552 * 13 12 10 40 40 H 1.08994 * 109.47397 * 59.99843 * 13 12 10 41 41 H 1.09000 * 109.47195 * 299.99415 * 14 13 12 42 42 H 1.08994 * 109.47584 * 59.99634 * 14 13 12 43 43 H 0.97000 * 120.00246 * 179.97438 * 18 17 15 44 44 H 1.08004 * 120.00110 * 179.72356 * 23 8 7 45 45 H 1.07998 * 120.00406 * 180.25565 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0723 2.8634 0.0000 6 6 4.3031 3.5143 1.1973 7 6 4.7644 4.8175 1.1979 8 6 4.9943 5.4698 0.0011 9 6 5.4966 6.8907 0.0016 10 6 7.0036 6.8906 0.0010 11 8 7.6100 5.8402 0.0051 12 7 7.6775 8.0578 0.0018 13 6 9.1425 8.0577 0.0072 14 6 9.6525 9.5003 0.0077 15 6 11.1596 9.5003 0.0138 16 1 11.6995 8.5650 0.0174 17 6 11.8489 10.6943 0.0148 18 7 11.1914 11.8333 0.0109 19 14 13.7169 10.6943 0.0231 20 1 14.2172 9.9923 -1.1860 21 1 14.2119 12.0944 0.0235 22 1 14.2065 9.9962 1.2389 23 6 4.7578 4.8208 -1.1963 24 6 4.3014 3.5160 -1.1969 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 4.1239 3.0046 2.1325 35 1 4.9452 5.3260 2.1335 36 1 5.1338 7.4039 0.8922 37 1 5.1329 7.4050 -0.8878 38 1 7.1925 8.8979 -0.0011 39 1 9.5026 7.5452 0.8992 40 1 9.5091 7.5427 -0.8807 41 1 9.2925 10.0133 -0.8842 42 1 9.2859 10.0150 0.8957 43 1 11.6763 12.6733 0.0119 44 1 4.9331 5.3319 -2.1315 45 1 4.1206 3.0075 -2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273049160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:43 Heat of formation + Delta-G solvation = -57.361866 kcal Electronic energy + Delta-G solvation = -21323.284959 eV Core-core repulsion = 18110.786174 eV Total energy + Delta-G solvation = -3212.498785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.91894 -38.76491 -36.14807 -34.82872 -33.30258 -32.82103 -30.92029 -30.61754 -29.40655 -27.04833 -24.75718 -23.62805 -22.75017 -21.53025 -21.10879 -20.68942 -19.90019 -16.79011 -16.41740 -16.14636 -16.10086 -15.41072 -15.32207 -14.67729 -14.66386 -14.45711 -14.35839 -13.46420 -13.40954 -13.37210 -13.28227 -13.01918 -12.73744 -12.30791 -12.17957 -11.94171 -11.61055 -11.53597 -11.41476 -11.20954 -11.03400 -10.99748 -10.80089 -10.79343 -10.65562 -10.31410 -9.79813 -9.47741 -9.21901 -8.88428 -8.52973 -8.48218 -8.34131 -6.09465 -4.12379 1.31293 1.44174 3.04309 3.31170 3.34887 3.37920 3.56373 3.97386 4.42162 4.44834 4.57624 4.70139 4.77381 4.77906 4.96314 5.00935 5.01717 5.27446 5.27661 5.28786 5.37053 5.39530 5.44075 5.48322 5.49811 5.54768 5.67384 5.69007 5.80510 5.91900 5.99805 6.07277 6.08697 6.35028 6.35647 6.41589 6.59057 6.62367 6.74609 6.94237 7.01690 7.51587 7.61626 7.88645 8.03962 8.28051 8.69247 8.93418 9.52409 11.02029 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.053795 B = 0.002017 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.373129 B =13875.354384 C =14059.447589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.080 4.080 5 C -0.088 4.088 6 C -0.117 4.117 7 C -0.103 4.103 8 C -0.062 4.062 9 C -0.106 4.106 10 C 0.505 3.495 11 O -0.543 6.543 12 N -0.725 5.725 13 C 0.122 3.878 14 C 0.012 3.988 15 C -0.523 4.523 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.103 4.103 24 C -0.117 4.117 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.397 0.603 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.262 0.738 44 H 0.119 0.881 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.862 -17.470 -0.039 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.117 4.117 5 C -0.088 4.088 6 C -0.135 4.135 7 C -0.121 4.121 8 C -0.062 4.062 9 C -0.146 4.146 10 C 0.290 3.710 11 O -0.420 6.420 12 N -0.375 5.375 13 C 0.000 4.000 14 C -0.025 4.025 15 C -0.561 4.561 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.121 4.121 24 C -0.135 4.135 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.231 0.769 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.137 0.863 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.370 -18.026 -0.035 27.957 hybrid contribution 0.910 0.658 0.001 1.123 sum -20.459 -17.368 -0.034 26.837 Atomic orbital electron populations 1.21774 0.95927 1.01496 1.01852 1.21556 0.95836 0.96926 1.02023 1.21608 0.94475 0.96601 1.02432 1.20601 0.95467 0.92841 1.02789 1.19813 0.99683 0.95997 0.93261 1.20927 1.00433 0.94755 0.97386 1.20964 0.98776 0.94906 0.97440 1.19300 0.98490 0.94912 0.93530 1.20722 0.93509 0.95315 1.05053 1.20443 0.89275 0.84278 0.76957 1.90698 1.70298 1.31359 1.49667 1.46349 1.09207 1.07821 1.74119 1.21702 0.76257 1.01375 1.00698 1.19323 0.96485 0.88857 0.97826 1.21024 0.90987 0.92671 1.51467 0.92325 1.24992 0.98798 0.95493 0.94967 1.69945 1.35730 0.97318 1.50310 0.86566 0.85188 0.76965 0.78782 1.20116 1.21224 1.20121 1.20965 0.98824 0.94906 0.97423 1.20926 1.00459 0.94720 0.97391 0.92756 0.92764 0.92869 0.92032 0.92032 0.91851 0.91859 0.91144 0.91153 0.86364 0.86271 0.88168 0.88185 0.76919 0.92673 0.92670 0.95941 0.95941 0.92799 0.86270 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.15 0.37 -0.49 16 2 C -0.13 -0.77 5.93 -26.73 -0.16 -0.93 16 3 C -0.11 -0.81 5.20 -26.73 -0.14 -0.95 16 4 C -0.08 -0.65 5.34 -27.88 -0.15 -0.80 16 5 C -0.09 -0.94 5.13 -104.63 -0.54 -1.48 16 6 C -0.12 -1.32 9.70 -39.58 -0.38 -1.71 16 7 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 8 C -0.06 -0.80 4.37 -104.63 -0.46 -1.26 16 9 C -0.11 -1.28 5.83 -29.04 -0.17 -1.45 16 10 C 0.51 8.54 7.82 -10.98 -0.09 8.45 16 11 O -0.54 -11.47 16.03 5.56 0.09 -11.38 16 12 N -0.72 -12.58 5.56 -60.30 -0.33 -12.91 16 13 C 0.12 2.63 5.61 -4.04 -0.02 2.60 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 19 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 24 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 36 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16 37 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.40 5.84 8.47 -40.82 -0.35 5.49 16 39 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 45 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -32.47 378.01 -10.18 -42.65 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.91 Total: 1.10 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -3.44 Total: -16.21 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.40 Total: -38.30 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.47 -10.18 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273049160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.708 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds