Wall clock time and date at job start Tue Mar 31 2020 06:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46998 * 2 1 4 4 C 1.53008 * 109.47142 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47135 * 180.02562 * 4 3 2 6 6 C 1.38226 * 120.00049 * 89.99771 * 5 4 3 7 7 C 1.38243 * 119.99917 * 179.97438 * 6 5 4 8 8 C 1.38229 * 120.00123 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00371 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.46617 * 90.00212 * 9 8 7 11 11 O 1.21283 * 120.00521 * 359.73030 * 10 9 8 12 12 N 1.34784 * 119.99774 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99893 * 179.72962 * 12 10 9 14 14 C 1.53003 * 109.46708 * 180.02562 * 13 12 10 15 15 C 1.50708 * 109.46949 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99690 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00050 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99915 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00185 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46940 * 60.00393 * 19 17 15 21 21 H 1.48496 * 109.47341 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47121 * 300.00922 * 19 17 15 23 23 C 1.38239 * 119.99641 * 0.26201 * 8 7 6 24 24 C 1.38231 * 120.00184 * 359.48931 * 23 8 7 25 25 H 1.08998 * 109.47353 * 300.00224 * 1 2 3 26 26 H 1.09001 * 109.47005 * 60.00205 * 1 2 3 27 27 H 1.08996 * 109.47254 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47353 * 239.99776 * 2 1 3 29 29 H 1.08998 * 109.47324 * 119.99375 * 2 1 3 30 30 H 1.08998 * 109.47251 * 59.99714 * 3 2 1 31 31 H 1.09001 * 109.47075 * 299.99752 * 3 2 1 32 32 H 1.08993 * 109.46895 * 59.99965 * 4 3 2 33 33 H 1.09001 * 109.46930 * 299.99837 * 4 3 2 34 34 H 1.08003 * 120.00662 * 0.02562 * 6 5 4 35 35 H 1.08005 * 119.99822 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46798 * 330.01103 * 9 8 7 37 37 H 1.08993 * 109.47546 * 210.00655 * 9 8 7 38 38 H 0.97005 * 119.99846 * 359.72750 * 12 10 9 39 39 H 1.08998 * 109.47134 * 299.99552 * 13 12 10 40 40 H 1.08994 * 109.47397 * 59.99843 * 13 12 10 41 41 H 1.09000 * 109.47195 * 299.99415 * 14 13 12 42 42 H 1.08994 * 109.47584 * 59.99634 * 14 13 12 43 43 H 0.97000 * 120.00246 * 179.97438 * 18 17 15 44 44 H 1.08004 * 120.00110 * 179.72356 * 23 8 7 45 45 H 1.07998 * 120.00406 * 180.25565 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0723 2.8634 0.0000 6 6 4.3031 3.5143 1.1973 7 6 4.7644 4.8175 1.1979 8 6 4.9943 5.4698 0.0011 9 6 5.4966 6.8907 0.0016 10 6 7.0036 6.8906 0.0010 11 8 7.6100 5.8402 0.0051 12 7 7.6775 8.0578 0.0018 13 6 9.1425 8.0577 0.0072 14 6 9.6525 9.5003 0.0077 15 6 11.1596 9.5003 0.0138 16 1 11.6995 8.5650 0.0174 17 6 11.8489 10.6943 0.0148 18 7 11.1914 11.8333 0.0109 19 14 13.7169 10.6943 0.0231 20 1 14.2172 9.9923 -1.1860 21 1 14.2119 12.0944 0.0235 22 1 14.2065 9.9962 1.2389 23 6 4.7578 4.8208 -1.1963 24 6 4.3014 3.5160 -1.1969 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 4.1239 3.0046 2.1325 35 1 4.9452 5.3260 2.1335 36 1 5.1338 7.4039 0.8922 37 1 5.1329 7.4050 -0.8878 38 1 7.1925 8.8979 -0.0011 39 1 9.5026 7.5452 0.8992 40 1 9.5091 7.5427 -0.8807 41 1 9.2925 10.0133 -0.8842 42 1 9.2859 10.0150 0.8957 43 1 11.6763 12.6733 0.0119 44 1 4.9331 5.3319 -2.1315 45 1 4.1206 3.0075 -2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273049160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:42 Heat of formation + Delta-G solvation = -74.682579 kcal Electronic energy + Delta-G solvation = -21324.036041 eV Core-core repulsion = 18110.786174 eV Total energy + Delta-G solvation = -3213.249867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.02943 -39.91897 -36.86896 -36.47296 -34.80804 -34.11179 -31.91316 -31.78407 -30.73612 -28.04544 -26.48150 -24.49470 -23.61953 -22.93364 -22.09684 -21.72262 -21.10122 -18.60174 -17.92279 -17.27691 -16.98215 -16.51768 -16.39617 -16.33986 -15.80935 -15.76653 -14.93341 -14.87480 -14.66542 -14.33155 -14.27250 -14.06706 -13.79806 -13.49996 -13.22605 -13.03840 -12.93109 -12.82990 -12.55607 -12.33542 -12.22917 -12.14359 -11.96859 -11.75845 -11.66942 -11.48865 -11.46801 -11.37391 -10.85742 -10.60474 -9.99743 -9.76772 -9.37812 -8.24582 -6.35234 0.41829 0.55587 1.41262 1.43377 1.51514 1.70290 2.28927 2.46128 2.94073 3.09926 3.70223 3.86481 3.89808 4.10241 4.10599 4.15896 4.23191 4.33012 4.38588 4.48202 4.53009 4.56619 4.59077 4.66048 4.79306 4.81115 4.84972 4.85149 4.99140 4.99259 5.15633 5.22323 5.22767 5.31089 5.32877 5.40547 5.49915 5.51843 5.53975 5.57906 5.71580 5.76350 5.78426 6.15844 6.16497 6.67394 6.77616 7.33532 7.34029 8.86816 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.053795 B = 0.002017 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.373129 B =13875.354384 C =14059.447589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.077 4.077 5 C -0.090 4.090 6 C -0.127 4.127 7 C -0.118 4.118 8 C -0.084 4.084 9 C -0.094 4.094 10 C 0.506 3.494 11 O -0.587 6.587 12 N -0.719 5.719 13 C 0.141 3.859 14 C 0.023 3.977 15 C -0.550 4.550 16 H 0.057 0.943 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.964 3.036 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.118 4.118 24 C -0.127 4.127 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.412 0.588 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.266 0.734 44 H 0.127 0.873 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.536 -18.208 -0.045 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.145 4.145 4 C -0.114 4.114 5 C -0.090 4.090 6 C -0.145 4.145 7 C -0.136 4.136 8 C -0.085 4.085 9 C -0.133 4.133 10 C 0.294 3.706 11 O -0.468 6.468 12 N -0.371 5.371 13 C 0.017 3.983 14 C -0.015 4.015 15 C -0.589 4.589 16 H 0.075 0.925 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.789 3.211 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.136 4.136 24 C -0.145 4.145 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.248 0.752 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.075 0.925 44 H 0.145 0.855 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.079 -18.752 -0.041 28.967 hybrid contribution 1.069 0.844 0.002 1.362 sum -21.010 -17.908 -0.039 27.606 Atomic orbital electron populations 1.21778 0.95585 1.01919 1.01819 1.21541 0.96125 0.96161 1.02336 1.21547 0.93591 0.97288 1.02114 1.20630 0.96135 0.91315 1.03339 1.20146 0.98811 0.97108 0.92974 1.21215 1.00205 0.94649 0.98442 1.21211 0.99091 0.95599 0.97737 1.19485 0.99484 0.95512 0.93976 1.20725 0.89126 0.95778 1.07655 1.21285 0.91257 0.82973 0.75111 1.90676 1.71699 1.32861 1.51541 1.46174 1.07480 1.09159 1.74265 1.21174 0.78940 0.98698 0.99469 1.19136 0.95376 0.90532 0.96442 1.21450 0.92720 0.92899 1.51810 0.92504 1.25853 1.03775 0.95057 0.94352 1.70045 1.37642 0.97895 1.50828 0.85510 0.79217 0.77317 0.79073 1.19417 1.20439 1.19428 1.21213 0.99118 0.95594 0.97722 1.21216 1.00227 0.94618 0.98446 0.92805 0.92811 0.92242 0.91724 0.91728 0.92175 0.92178 0.90590 0.90606 0.84710 0.85556 0.85474 0.85471 0.75182 0.93928 0.93925 0.97186 0.97186 0.92515 0.85520 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.12 -1.31 5.93 30.59 0.18 -1.13 16 3 C -0.11 -1.38 5.20 30.60 0.16 -1.22 16 4 C -0.08 -1.15 5.34 29.85 0.16 -0.99 16 5 C -0.09 -1.85 5.13 -19.87 -0.10 -1.95 16 6 C -0.13 -2.74 9.70 22.27 0.22 -2.53 16 7 C -0.12 -2.84 9.70 22.27 0.22 -2.62 16 8 C -0.08 -2.09 4.37 -19.87 -0.09 -2.18 16 9 C -0.09 -2.08 5.83 29.10 0.17 -1.91 16 10 C 0.51 16.73 7.82 87.65 0.69 17.42 16 11 O -0.59 -24.93 16.03 -3.04 -0.05 -24.97 16 12 N -0.72 -24.63 5.56 -463.06 -2.57 -27.20 16 13 C 0.14 6.16 5.61 86.38 0.48 6.65 16 14 C 0.02 1.14 5.09 29.85 0.15 1.30 16 15 C -0.55 -31.04 9.11 25.60 0.23 -30.80 16 16 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 17 C 0.01 0.48 5.46 84.65 0.46 0.95 16 18 N -0.92 -54.16 13.29 21.45 0.28 -53.87 16 19 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 23 C -0.12 -2.83 9.70 22.27 0.22 -2.62 16 24 C -0.13 -2.74 9.70 22.27 0.22 -2.52 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 33 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 34 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 35 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 36 H 0.13 2.15 8.09 -2.39 -0.02 2.14 16 37 H 0.13 2.15 8.08 -2.39 -0.02 2.13 16 38 H 0.41 11.68 8.47 -92.70 -0.79 10.90 16 39 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 44 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 45 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -69.60 378.01 3.92 -65.67 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.16 Total: 19.53 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 4.08 Total: -24.95 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -2.29 Total: -81.08 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -69.60 3.92 -65.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273049160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.009 kcal (2) G-P(sol) polarization free energy of solvation -69.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds