Wall clock time and date at job start Tue Mar 31 2020 06:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47287 * 2 1 4 4 C 1.53010 * 109.46523 * 119.99424 * 2 1 3 5 5 C 1.53002 * 109.46869 * 60.00320 * 4 2 1 6 6 C 1.52995 * 109.47216 * 300.00002 * 4 2 1 7 7 C 1.53005 * 109.46802 * 179.97438 * 4 2 1 8 8 N 1.46502 * 109.46802 * 180.02562 * 7 4 2 9 9 C 1.34776 * 119.99692 * 180.02562 * 8 7 4 10 10 O 1.21592 * 119.99839 * 359.97438 * 9 8 7 11 11 C 1.47634 * 119.99869 * 180.02562 * 9 8 7 12 12 C 1.40016 * 119.89772 * 0.24248 * 11 9 8 13 13 C 1.36315 * 120.10695 * 180.25948 * 12 11 9 14 14 C 1.40885 * 119.89334 * 359.47978 * 13 12 11 15 15 C 1.41111 * 120.10536 * 180.30167 * 14 13 12 16 16 H 1.07996 * 120.00198 * 154.52656 * 15 14 13 17 17 C 1.40227 * 119.99546 * 334.52369 * 15 14 13 18 18 N 1.30644 * 120.00033 * 343.06447 * 17 15 14 19 19 Si 1.86799 * 119.99848 * 163.06669 * 17 15 14 20 20 H 1.48503 * 109.47357 * 59.99742 * 19 17 15 21 21 H 1.48498 * 109.47368 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47336 * 300.00015 * 19 17 15 23 23 C 1.40888 * 119.79168 * 0.27218 * 14 13 12 24 24 C 1.36313 * 119.89186 * 0.02562 * 23 14 13 25 25 H 1.08994 * 109.47508 * 300.00693 * 1 2 3 26 26 H 1.09005 * 109.46821 * 60.00160 * 1 2 3 27 27 H 1.08996 * 109.47666 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47508 * 239.99307 * 2 1 3 29 29 H 1.08997 * 109.47155 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47029 * 299.99461 * 3 2 1 31 31 H 1.08998 * 109.46789 * 59.99612 * 3 2 1 32 32 H 1.08996 * 109.47029 * 179.97438 * 5 4 2 33 33 H 1.08997 * 109.47155 * 299.99829 * 5 4 2 34 34 H 1.08998 * 109.46789 * 59.99601 * 5 4 2 35 35 H 1.09000 * 109.47295 * 300.00095 * 6 4 2 36 36 H 1.08997 * 109.46938 * 60.00091 * 6 4 2 37 37 H 1.09005 * 109.46727 * 180.02562 * 6 4 2 38 38 H 1.09000 * 109.47033 * 60.00319 * 7 4 2 39 39 H 1.09002 * 109.46906 * 300.00307 * 7 4 2 40 40 H 0.97001 * 120.00109 * 0.02562 * 8 7 4 41 41 H 1.08000 * 119.94850 * 0.03457 * 12 11 9 42 42 H 1.08004 * 120.05046 * 179.74690 * 13 12 11 43 43 H 0.97005 * 119.99903 * 179.97438 * 18 17 15 44 44 H 1.08007 * 120.05374 * 180.02562 * 23 14 13 45 45 H 1.07999 * 119.94443 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.5298 -2.1637 1.2494 6 6 1.5298 0.0002 2.4985 7 6 3.5699 -0.7218 1.2492 8 7 4.0581 -1.4129 2.4452 9 6 5.3832 -1.5361 2.6585 10 8 6.1733 -1.0741 1.8580 11 6 5.8752 -2.2330 3.8634 12 6 4.9634 -2.7695 4.7806 13 6 5.4129 -3.4092 5.8972 14 6 6.7976 -3.5396 6.1222 15 6 7.2679 -4.2065 7.2734 16 1 8.2439 -4.6688 7.2688 17 6 6.4679 -4.2689 8.4234 18 7 5.4559 -3.4540 8.5602 19 14 6.8491 -5.5171 9.7598 20 1 8.2166 -5.2763 10.2866 21 1 5.8633 -5.3793 10.8617 22 1 6.7711 -6.8879 9.1937 23 6 7.7112 -3.0027 5.1938 24 6 7.2522 -2.3594 4.0831 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.8934 -2.6776 2.1392 33 1 0.4399 -2.1637 1.2493 34 1 1.8932 -2.6775 0.3595 35 1 1.8932 1.0278 2.4985 36 1 0.4399 0.0002 2.4984 37 1 1.8935 -0.5134 3.3886 38 1 3.9336 0.3057 1.2489 39 1 3.9329 -1.2360 0.3592 40 1 3.4277 -1.7817 3.0835 41 1 3.9021 -2.6732 4.6049 42 1 4.7087 -3.8191 6.6061 43 1 4.9023 -3.4974 9.3555 44 1 8.7736 -3.1006 5.3619 45 1 7.9518 -1.9471 3.3712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275473415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:35 Heat of formation + Delta-G solvation = -49.439456 kcal Electronic energy + Delta-G solvation = -22897.299338 eV Core-core repulsion = 19685.144095 eV Total energy + Delta-G solvation = -3212.155243 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.69269 -38.34597 -36.96228 -33.91698 -33.84113 -31.17788 -30.08450 -29.43137 -28.21954 -27.27010 -26.23526 -25.08448 -22.64977 -21.51469 -20.87732 -19.60568 -18.28879 -17.51448 -16.88860 -15.76160 -15.32018 -15.18228 -14.80393 -14.46211 -14.18850 -13.96596 -13.55332 -13.42510 -13.18034 -13.02914 -12.67082 -12.28275 -12.11906 -12.09122 -11.96056 -11.89074 -11.86795 -11.41275 -11.30439 -11.26446 -11.22909 -10.98131 -10.63670 -10.52848 -10.43051 -10.37495 -10.04501 -9.54510 -9.34958 -8.92616 -8.49526 -7.71082 -7.52016 -7.01807 -4.59488 2.25658 2.93244 2.94592 2.98743 3.04240 3.74573 3.87395 3.90691 4.57595 4.59234 4.62973 4.68453 5.05596 5.17970 5.21417 5.40914 5.50248 5.57612 5.61345 5.68093 5.69918 5.76653 5.83741 5.85879 5.91003 5.96961 5.98641 6.05160 6.06406 6.17128 6.20676 6.33168 6.37038 6.41862 6.77674 6.83845 6.98760 7.10049 7.14656 7.44653 7.66830 7.80547 7.86725 8.08333 8.29332 8.40764 8.64129 8.76283 9.13059 9.90357 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026290 B = 0.003263 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.782945 B = 8578.005961 C = 9291.163441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.082 4.082 3 C -0.155 4.155 4 C -0.072 4.072 5 C -0.145 4.145 6 C -0.147 4.147 7 C 0.132 3.868 8 N -0.739 5.739 9 C 0.570 3.430 10 O -0.577 6.577 11 C -0.282 4.282 12 C -0.063 4.063 13 C -0.177 4.177 14 C 0.129 3.871 15 C -0.445 4.445 16 H 0.084 0.916 17 C 0.075 3.925 18 N -0.774 5.774 19 Si 0.914 3.086 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.239 4.239 24 C -0.023 4.023 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.396 0.604 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.286 0.714 44 H 0.098 0.902 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.007 3.494 -8.477 14.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.101 4.101 3 C -0.212 4.212 4 C -0.072 4.072 5 C -0.202 4.202 6 C -0.204 4.204 7 C 0.008 3.992 8 N -0.393 5.393 9 C 0.365 3.635 10 O -0.460 6.460 11 C -0.287 4.287 12 C -0.083 4.083 13 C -0.196 4.196 14 C 0.126 3.874 15 C -0.472 4.472 16 H 0.102 0.898 17 C -0.146 4.146 18 N -0.397 5.397 19 Si 0.737 3.263 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.258 4.258 24 C -0.042 4.042 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.232 0.768 41 H 0.105 0.895 42 H 0.138 0.862 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.653 3.908 -8.874 14.405 hybrid contribution -0.243 -0.628 1.010 1.214 sum -10.896 3.280 -7.864 13.832 Atomic orbital electron populations 1.21942 0.95207 1.01853 1.01662 1.21048 0.95732 0.96149 0.97150 1.21992 1.01627 0.95903 1.01670 1.20804 0.94468 0.96003 0.95935 1.21940 1.00927 0.95077 1.02269 1.21990 1.00895 1.00686 0.96817 1.21291 0.91943 0.97384 0.88550 1.45961 1.07639 1.60403 1.25259 1.18581 0.81022 0.78109 0.85836 1.90627 1.55606 1.51411 1.48331 1.18930 0.94256 1.16538 0.98972 1.20461 0.96096 0.97262 0.94432 1.20968 0.96131 1.05088 0.97424 1.17776 0.91696 0.86854 0.91088 1.19807 1.02668 1.28976 0.95793 0.89788 1.26084 0.93728 0.94920 0.99917 1.69733 1.13448 1.29144 1.27401 0.86263 0.79536 0.81295 0.79170 1.18685 1.20073 1.18503 1.20730 0.98116 1.08199 0.98761 1.20363 0.93573 0.94842 0.95414 0.92319 0.92978 0.92397 0.91121 0.92103 0.92926 0.92267 0.92368 0.92208 0.92514 0.92135 0.92244 0.92430 0.91829 0.92324 0.76763 0.89491 0.86227 0.90229 0.88398 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.49 37.16 0.32 -0.86 16 2 C -0.08 -0.76 2.28 -90.61 -0.21 -0.96 16 3 C -0.15 -1.43 8.49 37.16 0.32 -1.11 16 4 C -0.07 -0.77 0.33 -154.50 -0.05 -0.82 16 5 C -0.14 -1.50 7.95 37.16 0.30 -1.20 16 6 C -0.15 -1.54 7.60 37.16 0.28 -1.26 16 7 C 0.13 1.89 4.21 -4.04 -0.02 1.88 16 8 N -0.74 -12.51 4.91 -61.31 -0.30 -12.81 16 9 C 0.57 12.33 7.76 -12.43 -0.10 12.24 16 10 O -0.58 -14.03 16.32 5.29 0.09 -13.94 16 11 C -0.28 -6.53 5.89 -104.73 -0.62 -7.15 16 12 C -0.06 -1.41 9.47 -39.61 -0.38 -1.79 16 13 C -0.18 -4.34 8.63 -39.27 -0.34 -4.68 16 14 C 0.13 3.30 5.57 -106.80 -0.59 2.71 16 15 C -0.44 -11.10 9.05 -37.75 -0.34 -11.44 16 16 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 17 C 0.07 1.74 5.15 -17.31 -0.09 1.65 16 18 N -0.77 -18.56 10.95 55.56 0.61 -17.96 16 19 Si 0.91 17.31 29.59 -169.99 -5.03 12.28 16 20 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 21 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 23 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16 24 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 25 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.63 6.43 -51.93 -0.33 0.29 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 32 H 0.06 0.65 6.86 -51.93 -0.36 0.29 16 33 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 36 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 37 H 0.06 0.66 6.86 -51.93 -0.36 0.30 16 38 H 0.06 0.96 6.43 -51.93 -0.33 0.63 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.40 6.10 4.16 -40.82 -0.17 5.93 16 41 H 0.09 1.65 6.37 -52.49 -0.33 1.31 16 42 H 0.12 2.97 6.18 -52.48 -0.32 2.64 16 43 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 44 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 45 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -27.93 347.68 -8.37 -36.30 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.70 Total: 10.82 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -2.28 Total: -19.94 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.31 Total: -30.76 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.93 -8.37 -36.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275473415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.135 kcal (2) G-P(sol) polarization free energy of solvation -27.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds