Wall clock time and date at job start Tue Mar 31 2020 06:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47287 * 2 1 4 4 C 1.53010 * 109.46523 * 119.99424 * 2 1 3 5 5 C 1.53002 * 109.46869 * 60.00320 * 4 2 1 6 6 C 1.52995 * 109.47216 * 300.00002 * 4 2 1 7 7 C 1.53005 * 109.46802 * 179.97438 * 4 2 1 8 8 N 1.46502 * 109.46802 * 180.02562 * 7 4 2 9 9 C 1.34776 * 119.99692 * 180.02562 * 8 7 4 10 10 O 1.21592 * 119.99839 * 359.97438 * 9 8 7 11 11 C 1.47634 * 119.99869 * 180.02562 * 9 8 7 12 12 C 1.40016 * 119.89772 * 0.24248 * 11 9 8 13 13 C 1.36315 * 120.10695 * 180.25948 * 12 11 9 14 14 C 1.40885 * 119.89334 * 359.47978 * 13 12 11 15 15 C 1.41111 * 120.10536 * 180.30167 * 14 13 12 16 16 H 1.07996 * 120.00198 * 154.52656 * 15 14 13 17 17 C 1.40227 * 119.99546 * 334.52369 * 15 14 13 18 18 N 1.30644 * 120.00033 * 343.06447 * 17 15 14 19 19 Si 1.86799 * 119.99848 * 163.06669 * 17 15 14 20 20 H 1.48503 * 109.47357 * 59.99742 * 19 17 15 21 21 H 1.48498 * 109.47368 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47336 * 300.00015 * 19 17 15 23 23 C 1.40888 * 119.79168 * 0.27218 * 14 13 12 24 24 C 1.36313 * 119.89186 * 0.02562 * 23 14 13 25 25 H 1.08994 * 109.47508 * 300.00693 * 1 2 3 26 26 H 1.09005 * 109.46821 * 60.00160 * 1 2 3 27 27 H 1.08996 * 109.47666 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47508 * 239.99307 * 2 1 3 29 29 H 1.08997 * 109.47155 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47029 * 299.99461 * 3 2 1 31 31 H 1.08998 * 109.46789 * 59.99612 * 3 2 1 32 32 H 1.08996 * 109.47029 * 179.97438 * 5 4 2 33 33 H 1.08997 * 109.47155 * 299.99829 * 5 4 2 34 34 H 1.08998 * 109.46789 * 59.99601 * 5 4 2 35 35 H 1.09000 * 109.47295 * 300.00095 * 6 4 2 36 36 H 1.08997 * 109.46938 * 60.00091 * 6 4 2 37 37 H 1.09005 * 109.46727 * 180.02562 * 6 4 2 38 38 H 1.09000 * 109.47033 * 60.00319 * 7 4 2 39 39 H 1.09002 * 109.46906 * 300.00307 * 7 4 2 40 40 H 0.97001 * 120.00109 * 0.02562 * 8 7 4 41 41 H 1.08000 * 119.94850 * 0.03457 * 12 11 9 42 42 H 1.08004 * 120.05046 * 179.74690 * 13 12 11 43 43 H 0.97005 * 119.99903 * 179.97438 * 18 17 15 44 44 H 1.08007 * 120.05374 * 180.02562 * 23 14 13 45 45 H 1.07999 * 119.94443 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.5298 -2.1637 1.2494 6 6 1.5298 0.0002 2.4985 7 6 3.5699 -0.7218 1.2492 8 7 4.0581 -1.4129 2.4452 9 6 5.3832 -1.5361 2.6585 10 8 6.1733 -1.0741 1.8580 11 6 5.8752 -2.2330 3.8634 12 6 4.9634 -2.7695 4.7806 13 6 5.4129 -3.4092 5.8972 14 6 6.7976 -3.5396 6.1222 15 6 7.2679 -4.2065 7.2734 16 1 8.2439 -4.6688 7.2688 17 6 6.4679 -4.2689 8.4234 18 7 5.4559 -3.4540 8.5602 19 14 6.8491 -5.5171 9.7598 20 1 8.2166 -5.2763 10.2866 21 1 5.8633 -5.3793 10.8617 22 1 6.7711 -6.8879 9.1937 23 6 7.7112 -3.0027 5.1938 24 6 7.2522 -2.3594 4.0831 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.8934 -2.6776 2.1392 33 1 0.4399 -2.1637 1.2493 34 1 1.8932 -2.6775 0.3595 35 1 1.8932 1.0278 2.4985 36 1 0.4399 0.0002 2.4984 37 1 1.8935 -0.5134 3.3886 38 1 3.9336 0.3057 1.2489 39 1 3.9329 -1.2360 0.3592 40 1 3.4277 -1.7817 3.0835 41 1 3.9021 -2.6732 4.6049 42 1 4.7087 -3.8191 6.6061 43 1 4.9023 -3.4974 9.3555 44 1 8.7736 -3.1006 5.3619 45 1 7.9518 -1.9471 3.3712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275473415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:34 Heat of formation + Delta-G solvation = -63.094537 kcal Electronic energy + Delta-G solvation = -22897.891467 eV Core-core repulsion = 19685.144095 eV Total energy + Delta-G solvation = -3212.747372 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06322 -39.70128 -38.69780 -35.66472 -35.27860 -32.42092 -31.60166 -31.29304 -29.11966 -28.30798 -27.59588 -26.32712 -23.96585 -22.95246 -22.63376 -21.24536 -19.39841 -19.28736 -18.32185 -17.34270 -16.84958 -16.30170 -16.04614 -15.74012 -15.60019 -15.32090 -14.94957 -14.74682 -14.63179 -14.37990 -13.93839 -13.75878 -13.61844 -13.30710 -13.09965 -12.95569 -12.85033 -12.76707 -12.66724 -12.62376 -12.36219 -12.19814 -12.00912 -11.78749 -11.39390 -11.35644 -11.27006 -11.20916 -11.11977 -10.68318 -10.01641 -9.58054 -9.39425 -8.78475 -6.48558 0.44204 1.14159 1.39343 1.44742 1.52401 2.12909 2.18542 2.43637 2.79317 3.67240 3.68528 3.78003 3.84587 4.25018 4.26396 4.29710 4.33337 4.43947 4.44537 4.65895 4.71872 4.76161 4.82059 4.90582 4.91576 5.00830 5.01332 5.03302 5.07563 5.12564 5.15323 5.17908 5.19915 5.29574 5.30124 5.39175 5.56839 5.58427 5.63143 5.63995 5.81842 5.94276 5.98928 6.22483 6.53544 6.71911 6.77099 6.88642 7.45354 8.16692 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026290 B = 0.003263 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.782945 B = 8578.005961 C = 9291.163441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.155 4.155 4 C -0.063 4.063 5 C -0.145 4.145 6 C -0.147 4.147 7 C 0.130 3.870 8 N -0.720 5.720 9 C 0.568 3.432 10 O -0.609 6.609 11 C -0.293 4.293 12 C -0.054 4.054 13 C -0.195 4.195 14 C 0.102 3.898 15 C -0.475 4.475 16 H 0.085 0.915 17 C 0.038 3.962 18 N -0.799 5.799 19 Si 0.988 3.012 20 H -0.259 1.259 21 H -0.263 1.263 22 H -0.258 1.258 23 C -0.253 4.253 24 C -0.033 4.033 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.405 0.595 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.297 0.703 44 H 0.104 0.896 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.086 3.219 -8.208 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 C -0.212 4.212 4 C -0.063 4.063 5 C -0.202 4.202 6 C -0.204 4.204 7 C 0.007 3.993 8 N -0.372 5.372 9 C 0.362 3.638 10 O -0.494 6.494 11 C -0.298 4.298 12 C -0.073 4.073 13 C -0.215 4.215 14 C 0.099 3.901 15 C -0.502 4.502 16 H 0.103 0.897 17 C -0.181 4.181 18 N -0.422 5.422 19 Si 0.808 3.192 20 H -0.184 1.184 21 H -0.187 1.187 22 H -0.182 1.182 23 C -0.272 4.272 24 C -0.053 4.053 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.243 0.757 41 H 0.138 0.862 42 H 0.132 0.868 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.775 3.646 -8.618 15.835 hybrid contribution 0.374 -0.471 0.860 1.050 sum -12.400 3.175 -7.757 14.967 Atomic orbital electron populations 1.21915 0.93593 1.02435 1.02354 1.21039 0.96966 0.95756 0.96081 1.21989 1.00571 0.96185 1.02441 1.20761 0.91528 0.96889 0.97136 1.21957 1.02251 0.94309 1.01717 1.22005 1.02203 1.00253 0.95951 1.21484 0.94657 0.96323 0.86842 1.45825 1.06140 1.59252 1.26015 1.18434 0.82354 0.77935 0.85100 1.90607 1.56807 1.52803 1.49152 1.19205 0.94225 1.16542 0.99798 1.20694 0.97716 0.95668 0.93188 1.21006 0.95771 1.06395 0.98304 1.18126 0.92517 0.87580 0.91854 1.20091 1.03507 1.29966 0.96662 0.89670 1.26917 0.93190 0.96315 1.01668 1.69754 1.13990 1.29944 1.28544 0.85155 0.79553 0.78337 0.76204 1.18351 1.18745 1.18224 1.20870 0.98528 1.08741 0.99093 1.20504 0.94390 0.94987 0.95392 0.91930 0.92046 0.91850 0.91247 0.93743 0.91684 0.92011 0.93312 0.90165 0.92693 0.92405 0.90219 0.93496 0.92589 0.93138 0.75671 0.86158 0.86755 0.89175 0.87775 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.49 71.98 0.61 -1.24 16 2 C -0.08 -1.30 2.28 -10.79 -0.02 -1.33 16 3 C -0.15 -2.61 8.49 71.98 0.61 -2.00 16 4 C -0.06 -1.24 0.33 -52.18 -0.02 -1.25 16 5 C -0.15 -2.67 7.95 71.98 0.57 -2.10 16 6 C -0.15 -2.77 7.60 71.98 0.55 -2.23 16 7 C 0.13 3.64 4.21 86.38 0.36 4.00 16 8 N -0.72 -23.85 4.91 -466.14 -2.29 -26.14 16 9 C 0.57 24.63 7.76 86.72 0.67 25.30 16 10 O -0.61 -29.95 16.32 -4.00 -0.07 -30.02 16 11 C -0.29 -13.66 5.89 -19.94 -0.12 -13.78 16 12 C -0.05 -2.38 9.47 22.25 0.21 -2.17 16 13 C -0.20 -9.70 8.63 22.47 0.19 -9.51 16 14 C 0.10 5.36 5.57 -21.28 -0.12 5.24 16 15 C -0.48 -24.08 9.05 23.46 0.21 -23.87 16 16 H 0.09 4.13 7.90 -2.91 -0.02 4.11 16 17 C 0.04 1.77 5.15 85.35 0.44 2.21 16 18 N -0.80 -38.13 10.95 21.87 0.24 -37.89 16 19 Si 0.99 34.74 29.59 68.60 2.03 36.77 16 20 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 21 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 22 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 23 C -0.25 -12.72 9.73 22.47 0.22 -12.51 16 24 C -0.03 -1.64 9.52 22.25 0.21 -1.43 16 25 H 0.06 0.76 6.43 -2.39 -0.02 0.74 16 26 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.06 0.75 6.43 -2.39 -0.02 0.73 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 29 H 0.04 0.89 6.43 -2.39 -0.02 0.87 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.00 6.43 -2.39 -0.02 0.99 16 32 H 0.05 0.99 6.86 -2.39 -0.02 0.97 16 33 H 0.08 1.17 6.43 -2.39 -0.02 1.15 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.13 6.43 -2.39 -0.02 1.11 16 36 H 0.08 1.20 6.43 -2.39 -0.02 1.18 16 37 H 0.05 0.98 6.86 -2.38 -0.02 0.97 16 38 H 0.06 1.68 6.43 -2.39 -0.02 1.66 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.41 11.91 4.16 -92.71 -0.39 11.53 16 41 H 0.12 4.38 6.37 -2.91 -0.02 4.36 16 42 H 0.11 5.73 6.18 -2.91 -0.02 5.71 16 43 H 0.30 12.61 8.29 -92.70 -0.77 11.84 16 44 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 45 H 0.10 4.85 7.63 -2.91 -0.02 4.83 16 Total: -1.00 -60.55 347.68 5.11 -55.44 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: 0.61 Total: 38.50 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 4.59 Total: -36.66 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -2.05 Total: -64.03 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.07 Total: -30.02 kcal Atomic # 14 Polarization: 34.74 SS G_CDS: 2.03 Total: 36.77 kcal Total: -60.55 5.11 -55.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275473415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.659 kcal (2) G-P(sol) polarization free energy of solvation -60.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds