Wall clock time and date at job start Tue Mar 31 2020 05:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 112.84986 * 2 1 4 4 C 1.53778 * 113.61863 * 131.19464 * 2 1 3 5 5 H 1.08998 * 113.61412 * 25.34666 * 4 2 1 6 6 N 1.46907 * 113.61660 * 254.52906 * 4 2 1 7 7 C 1.46895 * 110.99969 * 154.99377 * 6 4 2 8 8 C 1.50700 * 109.47051 * 180.02562 * 7 6 4 9 9 H 1.07999 * 119.99988 * 0.02562 * 8 7 6 10 10 C 1.37885 * 120.00047 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99792 * 359.72305 * 10 8 7 12 12 Si 1.86795 * 120.00009 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47088 * 89.99795 * 12 10 8 14 14 H 1.48495 * 109.47293 * 209.99997 * 12 10 8 15 15 H 1.48507 * 109.47015 * 329.99955 * 12 10 8 16 16 C 1.53776 * 87.08267 * 139.98167 * 4 2 1 17 17 C 1.53778 * 113.61547 * 228.69508 * 2 1 3 18 18 H 1.09006 * 113.61350 * 334.55945 * 17 2 1 19 19 O 1.42896 * 113.61942 * 105.46441 * 17 2 1 20 20 C 1.42898 * 114.00256 * 210.00047 * 19 17 2 21 21 C 1.50699 * 109.47146 * 180.02562 * 20 19 17 22 22 C 1.38243 * 119.99841 * 269.72760 * 21 20 19 23 23 C 1.38229 * 119.99897 * 179.80779 * 22 21 20 24 24 C 1.38233 * 120.00402 * 0.42069 * 23 22 21 25 25 C 1.38241 * 119.99691 * 359.81205 * 24 23 22 26 26 C 1.38232 * 120.00382 * 89.99663 * 21 20 19 27 27 H 1.09007 * 109.46719 * 288.80246 * 1 2 3 28 28 H 1.09000 * 109.47537 * 48.80313 * 1 2 3 29 29 H 1.09001 * 109.47079 * 168.81051 * 1 2 3 30 30 H 1.09002 * 109.47082 * 191.19813 * 3 2 1 31 31 H 1.09003 * 109.46514 * 311.19703 * 3 2 1 32 32 H 1.08993 * 109.47405 * 71.19773 * 3 2 1 33 33 H 1.00893 * 111.00026 * 278.95391 * 6 4 2 34 34 H 1.09004 * 109.47210 * 60.00310 * 7 6 4 35 35 H 1.08997 * 109.47605 * 300.00670 * 7 6 4 36 36 H 0.97000 * 119.99468 * 179.97438 * 11 10 8 37 37 H 1.09002 * 113.61683 * 89.12071 * 16 4 2 38 38 H 1.09007 * 113.61213 * 220.02341 * 16 4 2 39 39 H 1.09002 * 109.46975 * 299.99695 * 20 19 17 40 40 H 1.09000 * 109.47053 * 60.00067 * 20 19 17 41 41 H 1.08007 * 119.99781 * 359.97438 * 22 21 20 42 42 H 1.08006 * 119.99803 * 180.20944 * 23 22 21 43 43 H 1.08001 * 120.00287 * 179.78925 * 24 23 22 44 44 H 1.07997 * 119.99570 * 179.97438 * 25 24 23 45 45 H 1.07994 * 119.99830 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9280 1.0602 5 1 1.4940 -1.7513 1.3518 6 7 2.7108 -0.2122 2.2121 7 6 2.7358 -1.0701 3.4043 8 6 3.3196 -0.3032 4.5628 9 1 3.6396 0.7193 4.4272 10 6 3.4452 -0.9071 5.7960 11 7 3.0505 -2.1505 5.9626 12 14 4.1681 0.0437 7.2322 13 1 3.0794 0.7420 7.9617 14 1 4.8564 -0.8970 8.1523 15 1 5.1433 1.0419 6.7243 16 6 3.1923 -1.3135 0.0013 17 6 2.1459 -0.9300 -1.0584 18 1 1.4945 -1.7549 -1.3472 19 8 2.6952 -0.2361 -2.1804 20 6 2.6465 -0.9757 -3.4021 21 6 3.2492 -0.1532 -4.5116 22 6 2.4482 0.6860 -5.2635 23 6 3.0018 1.4434 -6.2786 24 6 4.3548 1.3553 -6.5478 25 6 5.1550 0.5126 -5.7991 26 6 4.6021 -0.2419 -4.7813 27 1 -0.3633 0.3313 0.9729 28 1 -0.3634 0.6768 -0.7732 29 1 -0.3633 -1.0081 -0.1994 30 1 3.1942 1.3533 -0.1996 31 1 1.6413 2.0076 -0.7733 32 1 1.9600 1.8734 0.9727 33 1 3.6319 0.1416 2.0018 34 1 3.3473 -1.9503 3.2057 35 1 1.7204 -1.3811 3.6496 36 1 3.1392 -2.5754 6.8300 37 1 4.0711 -0.6686 0.0006 38 1 3.4443 -2.3740 0.0023 39 1 3.2106 -1.9015 -3.2890 40 1 1.6097 -1.2091 -3.6444 41 1 1.3903 0.7517 -5.0559 42 1 2.3765 2.1016 -6.8638 43 1 4.7867 1.9446 -7.3432 44 1 6.2120 0.4435 -6.0096 45 1 5.2272 -0.9004 -4.1965 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278749991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:25 Heat of formation + Delta-G solvation = -8.036118 kcal Electronic energy + Delta-G solvation = -22561.869661 eV Core-core repulsion = 19351.509801 eV Total energy + Delta-G solvation = -3210.359860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.04075 -39.32381 -36.57952 -33.90268 -32.07985 -31.69589 -31.10374 -29.94327 -27.10236 -26.67550 -25.92302 -22.99619 -22.78413 -22.19907 -21.50088 -21.25634 -18.27679 -17.13501 -16.57306 -16.17175 -15.77480 -15.56760 -14.90354 -14.67765 -14.54008 -14.03609 -13.70997 -13.63879 -13.42824 -13.12613 -12.86661 -12.84160 -12.27735 -12.12753 -11.80816 -11.71829 -11.48284 -11.37073 -11.25069 -11.16142 -11.08174 -10.83465 -10.73832 -10.34984 -10.26656 -10.15046 -9.71796 -9.16513 -9.11585 -9.08776 -8.99382 -8.46124 -7.18954 -6.01766 -4.03348 1.07338 1.20283 3.33411 3.39055 3.41753 3.43310 4.01738 4.44916 4.60170 4.64751 4.78863 4.83359 4.86289 4.91281 5.07401 5.08705 5.14497 5.21830 5.34286 5.35272 5.45691 5.52566 5.60880 5.75960 5.77903 5.83606 5.86007 5.98875 6.06309 6.18165 6.23604 6.27635 6.28917 6.34937 6.41400 6.44555 6.58553 6.72113 6.77743 6.90740 7.28391 7.36568 7.46549 7.81618 8.15678 8.44431 8.64746 9.06411 9.61563 11.09315 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027705 B = 0.002786 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.410592 B =10049.012686 C =10375.671245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 C -0.106 4.106 4 C 0.081 3.919 5 H 0.090 0.910 6 N -0.671 5.671 7 C 0.194 3.806 8 C -0.513 4.513 9 H 0.062 0.938 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.898 3.102 13 H -0.280 1.280 14 H -0.288 1.288 15 H -0.274 1.274 16 C -0.183 4.183 17 C 0.067 3.933 18 H 0.081 0.919 19 O -0.360 6.360 20 C 0.099 3.901 21 C -0.085 4.085 22 C -0.099 4.099 23 C -0.125 4.125 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.099 4.099 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.332 0.668 34 H -0.014 1.014 35 H 0.027 0.973 36 H 0.261 0.739 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.955 3.074 -24.466 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.073 4.073 3 C -0.163 4.163 4 C -0.031 4.031 5 H 0.108 0.892 6 N -0.299 5.299 7 C 0.067 3.933 8 C -0.551 4.551 9 H 0.080 0.920 10 C -0.146 4.146 11 N -0.538 5.538 12 Si 0.726 3.274 13 H -0.206 1.206 14 H -0.214 1.214 15 H -0.198 1.198 16 C -0.222 4.222 17 C 0.009 3.991 18 H 0.099 0.901 19 O -0.279 6.279 20 C 0.023 3.977 21 C -0.085 4.085 22 C -0.117 4.117 23 C -0.143 4.143 24 C -0.136 4.136 25 C -0.142 4.142 26 C -0.117 4.117 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.150 0.850 34 H 0.003 0.997 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.488 3.416 -24.103 24.390 hybrid contribution 1.022 -0.584 0.577 1.311 sum -0.466 2.832 -23.527 23.701 Atomic orbital electron populations 1.21702 0.94515 1.00762 1.02018 1.22314 0.94868 0.96471 0.93608 1.21193 1.00045 0.93619 1.01432 1.22760 0.95836 0.94909 0.89602 0.89240 1.60482 1.27985 1.38197 1.03282 1.19581 0.96660 0.90794 0.86224 1.21202 1.40520 0.99168 0.94260 0.91991 1.24990 0.95774 0.94953 0.98890 1.69966 1.47801 1.12060 1.24002 0.86492 0.79203 0.79577 0.82094 1.20633 1.21353 1.19849 1.24205 0.99066 1.01284 0.97668 1.23847 0.95566 0.95204 0.84485 0.90063 1.88049 1.82044 1.42172 1.15599 1.21321 0.99112 0.93380 0.83894 1.19677 0.94006 0.98496 0.96323 1.21081 0.99952 0.95446 0.95263 1.21140 0.95357 0.99631 0.98154 1.21182 0.94038 0.98731 0.99689 1.21154 0.99877 0.97020 0.96180 1.21100 0.94354 0.99139 0.97111 0.91712 0.93188 0.93325 0.92896 0.93789 0.91217 0.85012 0.99655 0.95505 0.92967 0.89305 0.91950 0.92734 0.92742 0.85972 0.86025 0.86150 0.85993 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.19 37.15 0.34 -1.48 16 2 C -0.07 -1.08 1.35 -153.70 -0.21 -1.28 16 3 C -0.11 -1.64 7.82 37.16 0.29 -1.35 16 4 C 0.08 1.43 3.64 -66.90 -0.24 1.18 16 5 H 0.09 1.64 7.82 -51.93 -0.41 1.23 16 6 N -0.67 -14.27 5.53 -107.13 -0.59 -14.86 16 7 C 0.19 5.07 5.28 -4.98 -0.03 5.04 16 8 C -0.51 -14.58 9.32 -34.44 -0.32 -14.90 16 9 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 10 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 12 Si 0.90 21.86 29.54 -169.99 -5.02 16.83 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 C -0.18 -2.82 7.18 -25.92 -0.19 -3.01 16 17 C 0.07 0.92 3.72 -25.92 -0.10 0.82 16 18 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 19 O -0.36 -4.94 9.43 -35.23 -0.33 -5.27 16 20 C 0.10 1.09 5.90 36.01 0.21 1.31 16 21 C -0.08 -0.93 5.51 -104.62 -0.58 -1.50 16 22 C -0.10 -0.99 9.70 -39.58 -0.38 -1.38 16 23 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 24 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 26 C -0.10 -1.02 9.70 -39.58 -0.38 -1.40 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.60 7.94 -51.93 -0.41 0.19 16 30 H 0.05 0.84 7.19 -51.93 -0.37 0.47 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.17 7.77 -51.93 -0.40 0.77 16 33 H 0.33 6.91 8.11 -39.30 -0.32 6.59 16 34 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16 35 H 0.03 0.76 8.13 -51.93 -0.42 0.33 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.09 1.43 7.34 -51.93 -0.38 1.05 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.55 8.08 -51.93 -0.42 0.13 16 40 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 41 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 42 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 45 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -30.63 368.31 -10.26 -40.89 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.73 Total: 4.00 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -2.87 Total: -20.91 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.14 Total: -41.09 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.33 Total: -5.27 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.63 -10.26 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278749991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.851 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds