Wall clock time and date at job start Tue Mar 31 2020 05:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 112.84986 * 2 1 4 4 C 1.53778 * 113.61863 * 131.19464 * 2 1 3 5 5 H 1.08998 * 113.61412 * 25.34666 * 4 2 1 6 6 N 1.46907 * 113.61660 * 254.52906 * 4 2 1 7 7 C 1.46895 * 110.99969 * 154.99377 * 6 4 2 8 8 C 1.50700 * 109.47051 * 180.02562 * 7 6 4 9 9 H 1.07999 * 119.99988 * 0.02562 * 8 7 6 10 10 C 1.37885 * 120.00047 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99792 * 359.72305 * 10 8 7 12 12 Si 1.86795 * 120.00009 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47088 * 89.99795 * 12 10 8 14 14 H 1.48495 * 109.47293 * 209.99997 * 12 10 8 15 15 H 1.48507 * 109.47015 * 329.99955 * 12 10 8 16 16 C 1.53776 * 87.08267 * 139.98167 * 4 2 1 17 17 C 1.53778 * 113.61547 * 228.69508 * 2 1 3 18 18 H 1.09006 * 113.61350 * 334.55945 * 17 2 1 19 19 O 1.42896 * 113.61942 * 105.46441 * 17 2 1 20 20 C 1.42898 * 114.00256 * 210.00047 * 19 17 2 21 21 C 1.50699 * 109.47146 * 180.02562 * 20 19 17 22 22 C 1.38243 * 119.99841 * 269.72760 * 21 20 19 23 23 C 1.38229 * 119.99897 * 179.80779 * 22 21 20 24 24 C 1.38233 * 120.00402 * 0.42069 * 23 22 21 25 25 C 1.38241 * 119.99691 * 359.81205 * 24 23 22 26 26 C 1.38232 * 120.00382 * 89.99663 * 21 20 19 27 27 H 1.09007 * 109.46719 * 288.80246 * 1 2 3 28 28 H 1.09000 * 109.47537 * 48.80313 * 1 2 3 29 29 H 1.09001 * 109.47079 * 168.81051 * 1 2 3 30 30 H 1.09002 * 109.47082 * 191.19813 * 3 2 1 31 31 H 1.09003 * 109.46514 * 311.19703 * 3 2 1 32 32 H 1.08993 * 109.47405 * 71.19773 * 3 2 1 33 33 H 1.00893 * 111.00026 * 278.95391 * 6 4 2 34 34 H 1.09004 * 109.47210 * 60.00310 * 7 6 4 35 35 H 1.08997 * 109.47605 * 300.00670 * 7 6 4 36 36 H 0.97000 * 119.99468 * 179.97438 * 11 10 8 37 37 H 1.09002 * 113.61683 * 89.12071 * 16 4 2 38 38 H 1.09007 * 113.61213 * 220.02341 * 16 4 2 39 39 H 1.09002 * 109.46975 * 299.99695 * 20 19 17 40 40 H 1.09000 * 109.47053 * 60.00067 * 20 19 17 41 41 H 1.08007 * 119.99781 * 359.97438 * 22 21 20 42 42 H 1.08006 * 119.99803 * 180.20944 * 23 22 21 43 43 H 1.08001 * 120.00287 * 179.78925 * 24 23 22 44 44 H 1.07997 * 119.99570 * 179.97438 * 25 24 23 45 45 H 1.07994 * 119.99830 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9280 1.0602 5 1 1.4940 -1.7513 1.3518 6 7 2.7108 -0.2122 2.2121 7 6 2.7358 -1.0701 3.4043 8 6 3.3196 -0.3032 4.5628 9 1 3.6396 0.7193 4.4272 10 6 3.4452 -0.9071 5.7960 11 7 3.0505 -2.1505 5.9626 12 14 4.1681 0.0437 7.2322 13 1 3.0794 0.7420 7.9617 14 1 4.8564 -0.8970 8.1523 15 1 5.1433 1.0419 6.7243 16 6 3.1923 -1.3135 0.0013 17 6 2.1459 -0.9300 -1.0584 18 1 1.4945 -1.7549 -1.3472 19 8 2.6952 -0.2361 -2.1804 20 6 2.6465 -0.9757 -3.4021 21 6 3.2492 -0.1532 -4.5116 22 6 2.4482 0.6860 -5.2635 23 6 3.0018 1.4434 -6.2786 24 6 4.3548 1.3553 -6.5478 25 6 5.1550 0.5126 -5.7991 26 6 4.6021 -0.2419 -4.7813 27 1 -0.3633 0.3313 0.9729 28 1 -0.3634 0.6768 -0.7732 29 1 -0.3633 -1.0081 -0.1994 30 1 3.1942 1.3533 -0.1996 31 1 1.6413 2.0076 -0.7733 32 1 1.9600 1.8734 0.9727 33 1 3.6319 0.1416 2.0018 34 1 3.3473 -1.9503 3.2057 35 1 1.7204 -1.3811 3.6496 36 1 3.1392 -2.5754 6.8300 37 1 4.0711 -0.6686 0.0006 38 1 3.4443 -2.3740 0.0023 39 1 3.2106 -1.9015 -3.2890 40 1 1.6097 -1.2091 -3.6444 41 1 1.3903 0.7517 -5.0559 42 1 2.3765 2.1016 -6.8638 43 1 4.7867 1.9446 -7.3432 44 1 6.2120 0.4435 -6.0096 45 1 5.2272 -0.9004 -4.1965 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278749991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:25 Heat of formation + Delta-G solvation = -24.874302 kcal Electronic energy + Delta-G solvation = -22562.599819 eV Core-core repulsion = 19351.509801 eV Total energy + Delta-G solvation = -3211.090018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.24083 -40.08842 -37.68422 -35.79308 -33.85576 -32.65980 -31.77885 -31.23541 -28.60698 -28.20953 -26.94332 -24.62229 -23.51131 -23.41082 -23.06793 -22.22459 -19.66313 -18.36608 -17.86113 -17.51669 -16.73873 -16.62954 -16.41349 -15.96754 -15.65356 -15.35595 -15.18647 -14.71041 -14.28574 -14.25272 -14.20052 -14.00582 -13.71170 -13.39807 -13.16238 -13.03302 -12.94286 -12.71305 -12.69131 -12.47256 -12.44960 -12.06028 -11.94083 -11.90535 -11.60187 -11.54542 -11.43674 -10.91773 -10.64899 -10.23940 -9.81188 -9.73710 -8.96012 -8.22148 -6.32909 0.35870 0.51046 1.40762 1.42524 1.53715 2.39907 2.61085 3.10999 3.13064 3.55458 3.56769 3.68908 3.81519 3.94856 4.02927 4.10698 4.17161 4.29583 4.35532 4.37173 4.44014 4.51147 4.60590 4.66783 4.73075 4.78829 4.91991 4.93792 5.02090 5.06773 5.09203 5.16532 5.16779 5.20547 5.27065 5.32651 5.51679 5.56336 5.61890 5.62064 5.65323 5.69173 6.04551 6.11003 6.35555 6.51336 6.75143 6.91206 7.38047 8.89264 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027705 B = 0.002786 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.410592 B =10049.012686 C =10375.671245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 C -0.099 4.099 4 C 0.065 3.935 5 H 0.080 0.920 6 N -0.668 5.668 7 C 0.212 3.788 8 C -0.535 4.535 9 H 0.062 0.938 10 C 0.001 3.999 11 N -0.934 5.934 12 Si 0.972 3.028 13 H -0.273 1.273 14 H -0.281 1.281 15 H -0.264 1.264 16 C -0.179 4.179 17 C 0.086 3.914 18 H 0.104 0.896 19 O -0.373 6.373 20 C 0.097 3.903 21 C -0.105 4.105 22 C -0.112 4.112 23 C -0.131 4.131 24 C -0.122 4.122 25 C -0.133 4.133 26 C -0.117 4.117 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.334 0.666 34 H -0.041 1.041 35 H -0.001 1.001 36 H 0.265 0.735 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.131 0.869 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 4.122 -25.976 26.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.070 4.070 3 C -0.156 4.156 4 C -0.046 4.046 5 H 0.098 0.902 6 N -0.297 5.297 7 C 0.084 3.916 8 C -0.573 4.573 9 H 0.081 0.919 10 C -0.197 4.197 11 N -0.574 5.574 12 Si 0.796 3.204 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.188 1.188 16 C -0.218 4.218 17 C 0.027 3.973 18 H 0.121 0.879 19 O -0.292 6.292 20 C 0.021 3.979 21 C -0.105 4.105 22 C -0.130 4.130 23 C -0.148 4.148 24 C -0.140 4.140 25 C -0.150 4.150 26 C -0.135 4.135 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.152 0.848 34 H -0.023 1.023 35 H 0.017 0.983 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.149 0.851 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.158 0.842 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.402 4.471 -25.647 26.072 hybrid contribution 1.002 -0.911 0.940 1.649 sum -0.399 3.560 -24.707 24.965 Atomic orbital electron populations 1.21681 0.93170 1.02122 1.01723 1.22272 0.95940 0.95934 0.92836 1.21108 0.99721 0.93980 1.00802 1.22904 0.96929 0.95630 0.89125 0.90228 1.60392 1.28148 1.37800 1.03367 1.19192 0.94110 0.90332 0.87976 1.21559 1.40918 0.99414 0.95385 0.91936 1.25940 0.95959 0.95902 1.01899 1.70091 1.48683 1.13701 1.24944 0.85350 0.78587 0.78254 0.78215 1.19880 1.20655 1.18822 1.24118 0.98725 1.01398 0.97606 1.23621 0.94463 0.94962 0.84213 0.87866 1.88025 1.82055 1.42822 1.16339 1.21478 1.00254 0.93400 0.82804 1.19796 0.94484 0.99404 0.96815 1.21303 1.00502 0.95551 0.95620 1.21470 0.95911 0.99525 0.97927 1.21541 0.94051 0.98455 0.99941 1.21447 1.01005 0.96758 0.95829 1.21284 0.94475 0.99819 0.97884 0.93366 0.91405 0.91883 0.93693 0.92424 0.92997 0.84810 1.02285 0.98295 0.92654 0.90081 0.91512 0.92161 0.91195 0.85069 0.83882 0.83784 0.84249 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 9.19 71.98 0.66 -2.71 16 2 C -0.07 -2.02 1.35 -51.66 -0.07 -2.09 16 3 C -0.10 -3.01 7.82 71.98 0.56 -2.44 16 4 C 0.07 2.34 3.64 45.44 0.17 2.50 16 5 H 0.08 2.99 7.82 -2.39 -0.02 2.97 16 6 N -0.67 -29.29 5.53 -492.86 -2.72 -32.02 16 7 C 0.21 11.52 5.28 85.56 0.45 11.97 16 8 C -0.53 -31.01 9.32 25.60 0.24 -30.77 16 9 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 10 C 0.00 0.06 5.46 84.66 0.46 0.53 16 11 N -0.93 -57.04 13.29 21.45 0.28 -56.75 16 12 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 15 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 16 C -0.18 -5.50 7.18 31.12 0.22 -5.27 16 17 C 0.09 2.22 3.72 31.12 0.12 2.34 16 18 H 0.10 2.25 7.69 -2.38 -0.02 2.23 16 19 O -0.37 -9.66 9.43 -148.98 -1.41 -11.06 16 20 C 0.10 1.96 5.90 71.24 0.42 2.38 16 21 C -0.10 -2.16 5.51 -19.86 -0.11 -2.27 16 22 C -0.11 -2.05 9.70 22.27 0.22 -1.83 16 23 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 24 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 25 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 26 C -0.12 -2.29 9.70 22.27 0.22 -2.08 16 27 H 0.05 1.40 8.14 -2.38 -0.02 1.39 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.44 7.94 -2.39 -0.02 1.42 16 30 H 0.04 1.41 7.19 -2.39 -0.02 1.40 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.75 7.77 -2.39 -0.02 1.73 16 33 H 0.33 14.30 8.11 -89.70 -0.73 13.57 16 34 H -0.04 -2.37 8.14 -2.38 -0.02 -2.39 16 35 H 0.00 -0.06 8.13 -2.39 -0.02 -0.08 16 36 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.08 2.62 7.34 -2.39 -0.02 2.60 16 38 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.06 1.14 8.08 -2.39 -0.02 1.12 16 40 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 41 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 43 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 44 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 45 H 0.12 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -66.29 368.31 2.63 -63.66 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.22 Total: 24.35 kcal Atomic # 6 Polarization: -39.36 SS G_CDS: 4.23 Total: -35.13 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -2.44 Total: -88.77 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -1.41 Total: -11.06 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -66.29 2.63 -63.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278749991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.788 kcal (2) G-P(sol) polarization free energy of solvation -66.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds