Wall clock time and date at job start Tue Mar 31 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 112.90682 * 2 1 4 4 C 1.53779 * 113.61731 * 228.74209 * 2 1 3 5 5 H 1.09001 * 113.61377 * 334.65792 * 4 2 1 6 6 N 1.46903 * 113.61075 * 105.47230 * 4 2 1 7 7 C 1.46906 * 110.99891 * 205.00191 * 6 4 2 8 8 C 1.50698 * 109.46951 * 180.02562 * 7 6 4 9 9 H 1.07998 * 119.99955 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99900 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99709 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99984 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47306 * 59.99762 * 12 10 8 14 14 H 1.48500 * 109.47057 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47136 * 299.99963 * 12 10 8 16 16 C 1.53779 * 87.08402 * 220.02348 * 4 2 1 17 17 C 1.53784 * 87.08045 * 25.43458 * 16 4 2 18 18 H 1.09004 * 113.61451 * 220.02152 * 17 16 4 19 19 O 1.42896 * 113.61566 * 89.11454 * 17 16 4 20 20 C 1.42906 * 113.99728 * 112.49953 * 19 17 16 21 21 C 1.50697 * 109.46865 * 179.97438 * 20 19 17 22 22 C 1.38231 * 120.00485 * 269.72909 * 21 20 19 23 23 C 1.38233 * 120.00270 * 179.77007 * 22 21 20 24 24 C 1.38235 * 120.00056 * 0.50319 * 23 22 21 25 25 C 1.38240 * 119.99577 * 359.75168 * 24 23 22 26 26 C 1.38225 * 120.00162 * 359.97438 * 25 24 23 27 27 H 1.08992 * 109.47572 * 308.25727 * 1 2 3 28 28 H 1.09006 * 109.46986 * 68.25818 * 1 2 3 29 29 H 1.08999 * 109.47412 * 188.24948 * 1 2 3 30 30 H 1.09003 * 109.46749 * 171.74530 * 3 2 1 31 31 H 1.08994 * 109.46951 * 291.73880 * 3 2 1 32 32 H 1.08997 * 109.47048 * 51.74253 * 3 2 1 33 33 H 1.00896 * 110.99897 * 328.95295 * 6 4 2 34 34 H 1.09001 * 109.46910 * 300.00298 * 7 6 4 35 35 H 1.08996 * 109.47300 * 60.00060 * 7 6 4 36 36 H 0.96994 * 119.99584 * 180.02562 * 11 10 8 37 37 H 1.09002 * 113.61557 * 270.88569 * 16 4 2 38 38 H 1.09004 * 113.61501 * 139.97990 * 16 4 2 39 39 H 1.08990 * 109.47409 * 300.00371 * 20 19 17 40 40 H 1.09006 * 109.46923 * 60.00362 * 20 19 17 41 41 H 1.08002 * 120.00022 * 0.02562 * 22 21 20 42 42 H 1.08008 * 119.99921 * 180.23429 * 23 22 21 43 43 H 1.07999 * 119.99974 * 179.72858 * 24 23 22 44 44 H 1.08002 * 119.99462 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.99948 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1461 -0.9292 -1.0592 5 1 1.4940 -1.7528 -1.3499 6 7 2.7108 -0.2146 -2.2118 7 6 2.7359 -1.0738 -3.4031 8 6 3.3208 -0.3085 -4.5621 9 1 3.6414 0.7140 -4.4273 10 6 3.4457 -0.9133 -5.7949 11 7 3.0548 -2.1583 -5.9591 12 14 4.1700 0.0355 -7.2317 13 1 5.5537 0.4590 -6.8980 14 1 4.1944 -0.8327 -8.4362 15 1 3.3372 1.2347 -7.5032 16 6 3.1923 -1.3137 0.0002 17 6 2.1459 -0.9291 1.0595 18 1 2.5649 -0.3988 1.9147 19 8 1.2917 -2.0099 1.4391 20 6 1.4772 -2.4520 2.7854 21 6 0.5301 -3.5876 3.0761 22 6 -0.7278 -3.3254 3.5857 23 6 -1.5982 -4.3668 3.8478 24 6 -1.2069 -5.6712 3.6102 25 6 0.0531 -5.9337 3.1055 26 6 0.9213 -4.8919 2.8381 27 1 -0.3634 0.6363 0.8069 28 1 -0.3633 0.3807 -0.9546 29 1 -0.3634 -1.0170 0.1474 30 1 3.2038 1.3481 0.1476 31 1 1.9163 1.8921 -0.9545 32 1 1.6808 1.9917 0.8069 33 1 2.2036 0.6388 -2.3921 34 1 3.3474 -1.9538 -3.2036 35 1 1.7205 -1.3849 -3.6482 36 1 3.1430 -2.5839 -6.8262 37 1 4.0711 -0.6688 0.0002 38 1 3.4443 -2.3742 0.0003 39 1 2.5042 -2.7918 2.9180 40 1 1.2760 -1.6275 3.4695 41 1 -1.0321 -2.3066 3.7751 42 1 -2.5824 -4.1617 4.2424 43 1 -1.8853 -6.4851 3.8192 44 1 0.3589 -6.9528 2.9203 45 1 1.9058 -5.0971 2.4442 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278749993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:28 Heat of formation + Delta-G solvation = -4.920975 kcal Electronic energy + Delta-G solvation = -22703.108038 eV Core-core repulsion = 19492.883261 eV Total energy + Delta-G solvation = -3210.224777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.08021 -39.28517 -36.52033 -33.83802 -32.04424 -31.62974 -31.06460 -30.03011 -27.23064 -26.59065 -25.94682 -23.15709 -22.74576 -22.14256 -21.48295 -21.05713 -18.20202 -17.14605 -16.62635 -15.94167 -15.76423 -15.49819 -14.92563 -14.68167 -14.67025 -14.12666 -14.02867 -13.55282 -13.36787 -12.93895 -12.76205 -12.70848 -12.36712 -12.05882 -12.03506 -11.76244 -11.61812 -11.35298 -11.14867 -11.13077 -11.09798 -10.84639 -10.71983 -10.44858 -10.05823 -10.00859 -9.56264 -9.19002 -9.07766 -9.04224 -8.95275 -8.43397 -7.20720 -5.98155 -4.00143 1.10325 1.24422 3.35945 3.39671 3.39964 3.42740 3.95178 4.46601 4.60707 4.64298 4.81647 4.86105 4.87848 4.96254 5.10901 5.13176 5.22444 5.32210 5.36810 5.37475 5.49621 5.52281 5.56163 5.68901 5.80070 5.87480 5.90323 5.96799 6.05477 6.15716 6.22602 6.27442 6.33155 6.36532 6.42808 6.45220 6.53746 6.73526 6.79936 6.81631 7.34272 7.40229 7.50767 7.84858 8.20933 8.49049 8.69933 9.09477 9.64444 11.12900 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.003130 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.141539 B = 8942.925425 C = 9714.466328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 C -0.118 4.118 4 C 0.080 3.920 5 H 0.067 0.933 6 N -0.677 5.677 7 C 0.194 3.806 8 C -0.514 4.514 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.898 3.102 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.277 1.277 16 C -0.142 4.142 17 C 0.069 3.931 18 H 0.069 0.931 19 O -0.354 6.354 20 C 0.102 3.898 21 C -0.087 4.087 22 C -0.099 4.099 23 C -0.125 4.125 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.097 4.097 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.328 0.672 34 H 0.026 0.974 35 H -0.015 1.015 36 H 0.261 0.739 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.811 -1.888 22.166 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 C -0.175 4.175 4 C -0.031 4.031 5 H 0.085 0.915 6 N -0.308 5.308 7 C 0.067 3.933 8 C -0.552 4.552 9 H 0.079 0.921 10 C -0.146 4.146 11 N -0.537 5.537 12 Si 0.726 3.274 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.181 4.181 17 C 0.011 3.989 18 H 0.087 0.913 19 O -0.273 6.273 20 C 0.026 3.974 21 C -0.087 4.087 22 C -0.117 4.117 23 C -0.143 4.143 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.115 4.115 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.147 0.853 34 H 0.044 0.956 35 H 0.003 0.997 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.302 -2.254 22.050 23.043 hybrid contribution -0.394 0.328 -1.013 1.135 sum -6.696 -1.925 21.037 22.161 Atomic orbital electron populations 1.21588 0.94245 1.02192 1.00825 1.22388 0.95614 0.95058 0.96134 1.21429 1.00899 0.93527 1.01660 1.22907 0.94150 0.95539 0.90495 0.91550 1.60836 1.55819 1.07960 1.06146 1.19572 0.95053 0.92782 0.85869 1.21168 1.40850 0.99345 0.93874 0.92108 1.24995 0.95757 0.94988 0.98860 1.69963 1.47755 1.11904 1.24116 0.86562 0.79715 0.79599 0.81501 1.20194 1.21384 1.20312 1.23526 0.97642 1.01541 0.95400 1.23150 0.91987 0.88160 0.95623 0.91278 1.87970 1.60512 1.51241 1.27561 1.21329 0.97072 0.94208 0.84802 1.19651 0.95238 0.94012 0.99779 1.21065 0.92999 0.99279 0.98407 1.21136 0.99559 0.92846 1.00806 1.21189 0.96387 0.96797 0.99172 1.21165 0.94200 0.99172 0.99644 1.21120 1.00092 0.92109 0.98211 0.93402 0.92928 0.91661 0.91808 0.91509 0.93315 0.85319 0.95552 0.99722 0.92919 0.88825 0.91728 0.92502 0.92677 0.86008 0.86035 0.86129 0.85923 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.99 37.16 0.33 -1.53 16 2 C -0.09 -1.35 1.26 -153.69 -0.19 -1.54 16 3 C -0.12 -1.57 8.38 37.16 0.31 -1.26 16 4 C 0.08 1.50 3.53 -66.90 -0.24 1.26 16 5 H 0.07 1.40 7.82 -51.93 -0.41 1.00 16 6 N -0.68 -14.74 6.06 -107.13 -0.65 -15.39 16 7 C 0.19 5.25 5.28 -4.97 -0.03 5.22 16 8 C -0.51 -14.85 9.32 -34.44 -0.32 -15.17 16 9 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 12 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C -0.14 -2.33 7.36 -25.92 -0.19 -2.52 16 17 C 0.07 0.96 3.80 -25.91 -0.10 0.86 16 18 H 0.07 0.82 7.83 -51.93 -0.41 0.41 16 19 O -0.35 -5.05 8.84 -35.23 -0.31 -5.36 16 20 C 0.10 1.15 5.90 36.00 0.21 1.36 16 21 C -0.09 -0.99 5.51 -104.62 -0.58 -1.56 16 22 C -0.10 -1.03 9.70 -39.59 -0.38 -1.41 16 23 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 25 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 26 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.00 7.07 -51.93 -0.37 0.63 16 30 H 0.06 0.86 7.32 -51.93 -0.38 0.48 16 31 H 0.07 0.94 6.86 -51.93 -0.36 0.58 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.33 6.85 6.99 -39.29 -0.27 6.58 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H -0.02 -0.43 8.13 -51.93 -0.42 -0.86 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.09 1.51 7.63 -51.93 -0.40 1.11 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 40 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 42 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -31.51 366.31 -10.19 -41.70 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.62 Total: 4.11 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -2.84 Total: -20.90 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.09 Total: -42.10 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.31 Total: -5.36 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.51 -10.19 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278749993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.783 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds