Wall clock time and date at job start Tue Mar 31 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 112.90682 * 2 1 4 4 C 1.53779 * 113.61731 * 228.74209 * 2 1 3 5 5 H 1.09001 * 113.61377 * 334.65792 * 4 2 1 6 6 N 1.46903 * 113.61075 * 105.47230 * 4 2 1 7 7 C 1.46906 * 110.99891 * 205.00191 * 6 4 2 8 8 C 1.50698 * 109.46951 * 180.02562 * 7 6 4 9 9 H 1.07998 * 119.99955 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99900 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99709 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99984 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47306 * 59.99762 * 12 10 8 14 14 H 1.48500 * 109.47057 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47136 * 299.99963 * 12 10 8 16 16 C 1.53779 * 87.08402 * 220.02348 * 4 2 1 17 17 C 1.53784 * 87.08045 * 25.43458 * 16 4 2 18 18 H 1.09004 * 113.61451 * 220.02152 * 17 16 4 19 19 O 1.42896 * 113.61566 * 89.11454 * 17 16 4 20 20 C 1.42906 * 113.99728 * 112.49953 * 19 17 16 21 21 C 1.50697 * 109.46865 * 179.97438 * 20 19 17 22 22 C 1.38231 * 120.00485 * 269.72909 * 21 20 19 23 23 C 1.38233 * 120.00270 * 179.77007 * 22 21 20 24 24 C 1.38235 * 120.00056 * 0.50319 * 23 22 21 25 25 C 1.38240 * 119.99577 * 359.75168 * 24 23 22 26 26 C 1.38225 * 120.00162 * 359.97438 * 25 24 23 27 27 H 1.08992 * 109.47572 * 308.25727 * 1 2 3 28 28 H 1.09006 * 109.46986 * 68.25818 * 1 2 3 29 29 H 1.08999 * 109.47412 * 188.24948 * 1 2 3 30 30 H 1.09003 * 109.46749 * 171.74530 * 3 2 1 31 31 H 1.08994 * 109.46951 * 291.73880 * 3 2 1 32 32 H 1.08997 * 109.47048 * 51.74253 * 3 2 1 33 33 H 1.00896 * 110.99897 * 328.95295 * 6 4 2 34 34 H 1.09001 * 109.46910 * 300.00298 * 7 6 4 35 35 H 1.08996 * 109.47300 * 60.00060 * 7 6 4 36 36 H 0.96994 * 119.99584 * 180.02562 * 11 10 8 37 37 H 1.09002 * 113.61557 * 270.88569 * 16 4 2 38 38 H 1.09004 * 113.61501 * 139.97990 * 16 4 2 39 39 H 1.08990 * 109.47409 * 300.00371 * 20 19 17 40 40 H 1.09006 * 109.46923 * 60.00362 * 20 19 17 41 41 H 1.08002 * 120.00022 * 0.02562 * 22 21 20 42 42 H 1.08008 * 119.99921 * 180.23429 * 23 22 21 43 43 H 1.07999 * 119.99974 * 179.72858 * 24 23 22 44 44 H 1.08002 * 119.99462 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.99948 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1461 -0.9292 -1.0592 5 1 1.4940 -1.7528 -1.3499 6 7 2.7108 -0.2146 -2.2118 7 6 2.7359 -1.0738 -3.4031 8 6 3.3208 -0.3085 -4.5621 9 1 3.6414 0.7140 -4.4273 10 6 3.4457 -0.9133 -5.7949 11 7 3.0548 -2.1583 -5.9591 12 14 4.1700 0.0355 -7.2317 13 1 5.5537 0.4590 -6.8980 14 1 4.1944 -0.8327 -8.4362 15 1 3.3372 1.2347 -7.5032 16 6 3.1923 -1.3137 0.0002 17 6 2.1459 -0.9291 1.0595 18 1 2.5649 -0.3988 1.9147 19 8 1.2917 -2.0099 1.4391 20 6 1.4772 -2.4520 2.7854 21 6 0.5301 -3.5876 3.0761 22 6 -0.7278 -3.3254 3.5857 23 6 -1.5982 -4.3668 3.8478 24 6 -1.2069 -5.6712 3.6102 25 6 0.0531 -5.9337 3.1055 26 6 0.9213 -4.8919 2.8381 27 1 -0.3634 0.6363 0.8069 28 1 -0.3633 0.3807 -0.9546 29 1 -0.3634 -1.0170 0.1474 30 1 3.2038 1.3481 0.1476 31 1 1.9163 1.8921 -0.9545 32 1 1.6808 1.9917 0.8069 33 1 2.2036 0.6388 -2.3921 34 1 3.3474 -1.9538 -3.2036 35 1 1.7205 -1.3849 -3.6482 36 1 3.1430 -2.5839 -6.8262 37 1 4.0711 -0.6688 0.0002 38 1 3.4443 -2.3742 0.0003 39 1 2.5042 -2.7918 2.9180 40 1 1.2760 -1.6275 3.4695 41 1 -1.0321 -2.3066 3.7751 42 1 -2.5824 -4.1617 4.2424 43 1 -1.8853 -6.4851 3.8192 44 1 0.3589 -6.9528 2.9203 45 1 1.9058 -5.0971 2.4442 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278749993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:28 Heat of formation + Delta-G solvation = -23.133924 kcal Electronic energy + Delta-G solvation = -22703.897811 eV Core-core repulsion = 19492.883261 eV Total energy + Delta-G solvation = -3211.014550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.29591 -40.09973 -37.67244 -35.79009 -33.82979 -32.69450 -31.80251 -31.29181 -28.63575 -28.28205 -26.89686 -24.82630 -23.56131 -23.46469 -22.91821 -22.19861 -19.57574 -18.49804 -17.92419 -17.30757 -16.82958 -16.61217 -16.40693 -16.19284 -15.73839 -15.62993 -15.15672 -14.65726 -14.32494 -14.26760 -14.08303 -13.86310 -13.83470 -13.50877 -13.10384 -13.07738 -12.95446 -12.82313 -12.67083 -12.51349 -12.38824 -12.11975 -12.00699 -11.91451 -11.67140 -11.48140 -11.20346 -10.76813 -10.66306 -10.31291 -9.83510 -9.76410 -9.09439 -8.22789 -6.35205 0.32963 0.48733 1.39945 1.44405 1.52384 2.39488 2.52137 3.06321 3.09887 3.52353 3.59023 3.65156 3.90003 3.93818 4.00552 4.13764 4.23128 4.27917 4.31782 4.34076 4.38046 4.50592 4.62068 4.66198 4.76345 4.83342 4.84639 4.98839 5.01854 5.03102 5.07084 5.11376 5.14349 5.20277 5.23450 5.29279 5.52771 5.54299 5.56095 5.59492 5.64404 5.66587 6.03014 6.08822 6.35011 6.48060 6.74338 6.90526 7.36215 8.88938 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.003130 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.141539 B = 8942.925425 C = 9714.466328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 C -0.115 4.115 4 C 0.059 3.941 5 H 0.031 0.969 6 N -0.666 5.666 7 C 0.212 3.788 8 C -0.535 4.535 9 H 0.068 0.932 10 C -0.002 4.002 11 N -0.937 5.937 12 Si 0.977 3.023 13 H -0.266 1.266 14 H -0.283 1.283 15 H -0.264 1.264 16 C -0.142 4.142 17 C 0.087 3.913 18 H 0.104 0.896 19 O -0.376 6.376 20 C 0.099 3.901 21 C -0.107 4.107 22 C -0.110 4.110 23 C -0.131 4.131 24 C -0.122 4.122 25 C -0.135 4.135 26 C -0.119 4.119 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.334 0.666 34 H -0.008 1.008 35 H -0.049 1.049 36 H 0.265 0.735 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.135 0.865 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.138 0.862 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.020 -0.135 23.574 24.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.081 4.081 3 C -0.172 4.172 4 C -0.051 4.051 5 H 0.049 0.951 6 N -0.297 5.297 7 C 0.084 3.916 8 C -0.573 4.573 9 H 0.086 0.914 10 C -0.200 4.200 11 N -0.577 5.577 12 Si 0.800 3.200 13 H -0.191 1.191 14 H -0.209 1.209 15 H -0.189 1.189 16 C -0.181 4.181 17 C 0.029 3.971 18 H 0.122 0.878 19 O -0.295 6.295 20 C 0.024 3.976 21 C -0.107 4.107 22 C -0.128 4.128 23 C -0.148 4.148 24 C -0.140 4.140 25 C -0.153 4.153 26 C -0.137 4.137 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.153 0.847 34 H 0.010 0.990 35 H -0.031 1.031 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.153 0.847 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.156 0.844 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.517 -0.493 23.491 24.383 hybrid contribution -0.388 -0.324 -1.396 1.485 sum -6.904 -0.817 22.095 23.163 Atomic orbital electron populations 1.21540 0.93708 1.01791 1.01348 1.22372 0.96034 0.95564 0.94104 1.21435 1.01046 0.92342 1.02389 1.23061 0.95617 0.95976 0.90462 0.95107 1.60763 1.56507 1.07511 1.04920 1.19173 0.92225 0.92349 0.87900 1.21534 1.41253 0.99804 0.94758 0.91411 1.26037 0.95844 0.95946 1.02151 1.70116 1.48703 1.13801 1.25093 0.85332 0.79168 0.78252 0.77211 1.19101 1.20865 1.18904 1.23529 0.98033 1.00821 0.95716 1.22976 0.90474 0.87756 0.95890 0.87835 1.87961 1.60500 1.51469 1.29598 1.21507 0.97531 0.94971 0.83618 1.19822 0.96035 0.94133 1.00713 1.21318 0.92783 1.00369 0.98318 1.21491 1.00435 0.92699 1.00220 1.21546 0.96419 0.97686 0.98343 1.21447 0.94529 0.99728 0.99550 1.21302 1.00560 0.92757 0.99059 0.90533 0.93951 0.93251 0.91780 0.92486 0.90143 0.84701 0.99013 1.03133 0.92651 0.88217 0.93162 0.91944 0.90463 0.84690 0.83696 0.83765 0.84422 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 8.99 71.98 0.65 -2.83 16 2 C -0.08 -2.28 1.26 -51.65 -0.07 -2.35 16 3 C -0.11 -2.78 8.38 71.98 0.60 -2.17 16 4 C 0.06 2.31 3.53 45.44 0.16 2.47 16 5 H 0.03 1.41 7.82 -2.39 -0.02 1.39 16 6 N -0.67 -30.04 6.06 -492.84 -2.99 -33.02 16 7 C 0.21 12.08 5.28 85.56 0.45 12.54 16 8 C -0.54 -31.63 9.32 25.60 0.24 -31.39 16 9 H 0.07 3.83 7.81 -2.91 -0.02 3.80 16 10 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 11 N -0.94 -58.86 13.29 21.45 0.28 -58.58 16 12 Si 0.98 45.28 29.54 68.60 2.03 47.31 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 16 C -0.14 -4.70 7.36 31.12 0.23 -4.47 16 17 C 0.09 2.29 3.80 31.12 0.12 2.41 16 18 H 0.10 2.07 7.83 -2.39 -0.02 2.05 16 19 O -0.38 -10.50 8.84 -148.98 -1.32 -11.82 16 20 C 0.10 2.11 5.90 71.23 0.42 2.53 16 21 C -0.11 -2.38 5.51 -19.87 -0.11 -2.49 16 22 C -0.11 -2.14 9.70 22.27 0.22 -1.92 16 23 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 24 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 25 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 26 C -0.12 -2.64 9.70 22.27 0.22 -2.43 16 27 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.05 1.50 7.07 -2.39 -0.02 1.49 16 30 H 0.06 1.56 7.32 -2.39 -0.02 1.54 16 31 H 0.06 1.50 6.86 -2.39 -0.02 1.48 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 33 H 0.33 14.22 6.99 -89.70 -0.63 13.59 16 34 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H -0.05 -3.06 8.13 -2.39 -0.02 -3.08 16 36 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.10 3.16 7.63 -2.39 -0.02 3.14 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 40 H 0.08 1.28 8.08 -2.38 -0.02 1.26 16 41 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 43 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 44 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 45 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -70.59 366.31 2.59 -68.00 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.32 Total: 24.08 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 4.26 Total: -35.98 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -2.70 Total: -91.60 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -1.32 Total: -11.82 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -70.59 2.59 -68.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278749993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.868 kcal (2) G-P(sol) polarization free energy of solvation -70.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds