Wall clock time and date at job start Tue Mar 31 2020 06:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47242 * 2 1 4 4 C 1.52994 * 109.47378 * 239.99531 * 2 1 3 5 5 C 1.50697 * 109.47045 * 60.00199 * 4 2 1 6 6 H 1.07995 * 120.00088 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00101 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99930 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99841 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47062 * 90.00529 * 9 7 5 11 11 H 1.48504 * 109.47178 * 210.00179 * 9 7 5 12 12 H 1.48497 * 109.47727 * 330.00453 * 9 7 5 13 13 C 1.53006 * 109.47050 * 119.99391 * 2 1 3 14 14 N 1.46899 * 109.47179 * 329.22050 * 13 2 1 15 15 C 1.46435 * 110.99829 * 160.03012 * 14 13 2 16 16 C 1.53384 * 108.64582 * 72.21160 * 15 14 13 17 17 H 1.08998 * 109.77000 * 308.66234 * 16 15 14 18 18 O 1.42898 * 109.76742 * 187.87816 * 16 15 14 19 19 C 1.53034 * 107.92514 * 68.27221 * 16 15 14 20 20 C 1.50810 * 109.65631 * 312.70979 * 19 16 15 21 21 C 1.38619 * 118.12190 * 195.24006 * 20 19 16 22 22 C 1.38057 * 120.48472 * 179.97438 * 21 20 19 23 23 C 1.38311 * 119.88707 * 0.49193 * 22 21 20 24 24 C 1.37805 * 119.95172 * 359.65150 * 23 22 21 25 25 C 1.38375 * 122.01190 * 15.52497 * 20 19 16 26 26 H 1.09002 * 109.47268 * 273.86892 * 1 2 3 27 27 H 1.08998 * 109.47002 * 33.87618 * 1 2 3 28 28 H 1.09007 * 109.46820 * 153.87338 * 1 2 3 29 29 H 1.09004 * 109.47562 * 217.50080 * 3 2 1 30 30 H 1.09003 * 109.47132 * 337.49713 * 3 2 1 31 31 H 1.09000 * 109.47530 * 97.49933 * 3 2 1 32 32 H 1.09008 * 109.47273 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47647 * 300.00020 * 4 2 1 34 34 H 0.97000 * 119.99980 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47618 * 209.21492 * 13 2 1 36 36 H 1.09008 * 109.46865 * 89.21973 * 13 2 1 37 37 H 1.08995 * 109.60883 * 312.45946 * 15 14 13 38 38 H 1.09004 * 109.74276 * 192.03574 * 15 14 13 39 39 H 0.96699 * 113.99942 * 181.52994 * 18 16 15 40 40 H 1.08998 * 109.44536 * 192.65670 * 19 16 15 41 41 H 1.08997 * 109.41601 * 72.75008 * 19 16 15 42 42 H 1.07995 * 119.75243 * 0.20336 * 21 20 19 43 43 H 1.07994 * 120.05149 * 180.22916 * 22 21 20 44 44 H 1.07997 * 120.02050 * 179.66704 * 23 22 21 45 45 H 1.08003 * 119.78468 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9165 0.8668 -2.3806 7 6 1.8713 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2481 0.3983 -5.2571 10 1 2.2256 1.4407 -5.6613 11 1 1.0839 -0.5810 -6.3614 12 1 -0.0605 1.0350 -4.9615 13 6 2.0399 -0.7211 1.2494 14 7 1.0813 -0.5364 2.3470 15 6 1.2644 -1.5571 3.3809 16 6 2.5610 -1.2561 4.1431 17 1 3.3808 -1.1220 3.4374 18 8 2.8596 -2.3335 5.0331 19 6 2.3495 0.0319 4.9420 20 6 1.7269 1.0818 4.0563 21 6 1.7507 2.3988 4.4882 22 6 1.1954 3.3993 3.7158 23 6 0.6012 3.0869 2.5065 24 6 0.5711 1.7794 2.0721 25 6 1.1371 0.7642 2.8455 26 1 -0.3634 0.0693 1.0253 27 1 -0.3633 0.8532 -0.5728 28 1 -0.3633 -0.9227 -0.4526 29 1 2.9298 1.5133 -0.6256 30 1 1.2659 2.1015 -0.3933 31 1 2.2876 1.7403 1.0188 32 1 3.1301 -0.7209 -1.2493 33 1 1.6767 -1.7490 -1.2491 34 1 2.8618 -1.8825 -4.7334 35 1 3.0067 -0.3086 1.5379 36 1 2.1479 -1.7848 1.0363 37 1 1.3332 -2.5405 2.9160 38 1 0.4212 -1.5371 4.0714 39 1 3.6563 -2.1960 5.5637 40 1 3.3100 0.3918 5.3110 41 1 1.6892 -0.1692 5.7855 42 1 2.2104 2.6444 5.4340 43 1 1.2211 4.4235 4.0573 44 1 0.1613 3.8671 1.9031 45 1 0.1061 1.5385 1.1276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279424106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:23 Heat of formation + Delta-G solvation = -2.477038 kcal Electronic energy + Delta-G solvation = -24418.983630 eV Core-core repulsion = 21208.864830 eV Total energy + Delta-G solvation = -3210.118800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.06982 -37.61866 -37.26701 -35.20849 -32.94649 -31.85780 -30.15773 -29.26264 -27.18961 -26.50463 -26.17156 -24.23346 -23.02551 -22.79053 -21.53995 -19.62113 -18.14104 -17.44425 -16.73302 -16.13174 -15.77433 -15.33092 -14.86348 -14.63109 -14.28597 -14.22175 -13.82436 -13.61784 -13.31730 -12.99359 -12.82898 -12.74142 -12.38950 -12.10327 -11.74136 -11.66898 -11.46867 -11.04177 -10.93540 -10.87881 -10.73908 -10.61739 -10.35747 -10.19350 -10.15302 -10.02483 -9.74454 -9.13263 -8.97938 -8.78951 -8.45506 -8.30744 -7.65389 -5.95654 -3.95759 1.46617 1.56899 3.33775 3.40551 3.43392 3.72673 3.94368 4.15584 4.49615 4.57586 4.67863 4.91544 5.04062 5.18726 5.20381 5.37818 5.40865 5.45840 5.53199 5.59702 5.68043 5.73784 5.83276 5.90854 5.97707 6.00908 6.12985 6.17849 6.30221 6.39302 6.51155 6.57267 6.64377 6.71790 6.73794 6.91781 6.95813 7.09635 7.20537 7.28310 7.35715 7.44068 7.60590 7.69090 7.85928 8.03451 8.48625 9.09786 9.67410 11.16000 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020237 B = 0.004875 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.245749 B = 5742.454216 C = 6734.212949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.058 4.058 3 C -0.135 4.135 4 C 0.036 3.964 5 C -0.504 4.504 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.066 3.934 14 N -0.484 5.484 15 C 0.065 3.935 16 C 0.068 3.932 17 H 0.062 0.938 18 O -0.561 6.561 19 C -0.107 4.107 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.134 4.134 23 C -0.122 4.122 24 C -0.116 4.116 25 C 0.109 3.891 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.012 0.988 33 H 0.016 0.984 34 H 0.259 0.741 35 H 0.037 0.963 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.376 0.624 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 5.190 18.216 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.059 4.059 3 C -0.192 4.192 4 C -0.001 4.001 5 C -0.543 4.543 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.058 4.058 14 N -0.200 5.200 15 C -0.063 4.063 16 C 0.008 3.992 17 H 0.080 0.920 18 O -0.366 6.366 19 C -0.144 4.144 20 C -0.126 4.126 21 C -0.135 4.135 22 C -0.153 4.153 23 C -0.141 4.141 24 C -0.135 4.135 25 C 0.013 3.987 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.223 0.777 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.139 0.861 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.734 4.688 17.602 18.298 hybrid contribution 1.107 0.875 -0.364 1.457 sum -0.627 5.562 17.238 18.124 Atomic orbital electron populations 1.22158 0.95015 1.01343 1.00919 1.20681 0.95981 0.95016 0.94182 1.22350 1.01367 0.96095 0.99385 1.19265 0.95821 0.95071 0.89971 1.21185 1.30679 1.11903 0.90518 0.92478 1.25006 0.95423 0.95100 0.99032 1.69961 1.37377 1.23172 1.23283 0.86670 0.79241 0.79409 0.83133 1.20864 1.21395 1.19920 1.22554 0.91507 1.01706 0.90038 1.58914 1.50649 1.00393 1.10047 1.22165 0.95161 0.95977 0.93022 1.22559 0.99089 0.86120 0.91480 0.92041 1.86522 1.49368 1.43434 1.57229 1.21229 1.00942 0.94052 0.98197 1.19764 1.01043 0.94647 0.97111 1.20798 1.01099 0.91989 0.99626 1.20980 1.00148 0.98684 0.95466 1.21035 1.00224 0.96428 0.96414 1.22293 0.97993 0.91731 1.01464 1.18506 0.96895 0.89760 0.93567 0.90933 0.93633 0.93059 0.92763 0.93186 0.93815 0.96939 0.96577 0.93177 0.94469 0.90177 0.89063 0.89844 0.77737 0.90813 0.89929 0.86823 0.86629 0.86125 0.81886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 6.46 37.15 0.24 -2.34 16 2 C -0.06 -1.13 0.52 -154.51 -0.08 -1.22 16 3 C -0.14 -2.53 6.50 37.16 0.24 -2.29 16 4 C 0.04 0.89 3.52 -27.89 -0.10 0.80 16 5 C -0.50 -13.66 7.90 -34.44 -0.27 -13.93 16 6 H 0.06 1.51 6.72 -52.49 -0.35 1.16 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.07 1.14 3.93 -3.82 -0.02 1.12 16 14 N -0.48 -7.35 2.82 -171.27 -0.48 -7.83 16 15 C 0.06 0.87 5.47 -3.88 -0.02 0.85 16 16 C 0.07 0.82 3.54 -26.51 -0.09 0.72 16 17 H 0.06 0.79 6.87 -51.93 -0.36 0.44 16 18 O -0.56 -6.19 13.35 -35.23 -0.47 -6.66 16 19 C -0.11 -1.17 5.45 -27.81 -0.15 -1.32 16 20 C -0.12 -1.61 5.74 -104.38 -0.60 -2.21 16 21 C -0.12 -1.39 9.63 -39.51 -0.38 -1.78 16 22 C -0.13 -1.60 10.05 -39.62 -0.40 -1.99 16 23 C -0.12 -1.60 9.97 -39.71 -0.40 -1.99 16 24 C -0.12 -1.72 5.16 -39.23 -0.20 -1.93 16 25 C 0.11 1.61 4.43 -83.86 -0.37 1.24 16 26 H 0.07 1.24 4.35 -51.93 -0.23 1.01 16 27 H 0.04 0.85 6.61 -51.93 -0.34 0.51 16 28 H 0.05 1.04 7.87 -51.92 -0.41 0.63 16 29 H 0.05 1.11 7.65 -51.93 -0.40 0.72 16 30 H 0.05 0.91 6.71 -51.93 -0.35 0.56 16 31 H 0.04 0.75 4.74 -51.93 -0.25 0.50 16 32 H 0.01 0.33 8.12 -51.92 -0.42 -0.09 16 33 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.04 0.64 6.85 -51.93 -0.36 0.28 16 36 H 0.08 1.41 7.38 -51.92 -0.38 1.02 16 37 H 0.09 1.24 7.76 -51.93 -0.40 0.84 16 38 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 39 H 0.38 2.51 9.09 45.56 0.41 2.92 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.11 1.11 8.06 -52.49 -0.42 0.68 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.16 2.58 2.74 -52.48 -0.14 2.43 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -30.26 332.48 -8.99 -39.25 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.06 Total: 4.49 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -2.70 Total: -24.82 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.25 Total: -33.81 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.47 Total: -6.66 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.26 -8.99 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279424106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.772 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds