Wall clock time and date at job start Tue Mar 31 2020 06:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47242 * 2 1 4 4 C 1.52994 * 109.47378 * 239.99531 * 2 1 3 5 5 C 1.50697 * 109.47045 * 60.00199 * 4 2 1 6 6 H 1.07995 * 120.00088 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00101 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99930 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99841 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47062 * 90.00529 * 9 7 5 11 11 H 1.48504 * 109.47178 * 210.00179 * 9 7 5 12 12 H 1.48497 * 109.47727 * 330.00453 * 9 7 5 13 13 C 1.53006 * 109.47050 * 119.99391 * 2 1 3 14 14 N 1.46899 * 109.47179 * 329.22050 * 13 2 1 15 15 C 1.46435 * 110.99829 * 160.03012 * 14 13 2 16 16 C 1.53384 * 108.64582 * 72.21160 * 15 14 13 17 17 H 1.08998 * 109.77000 * 308.66234 * 16 15 14 18 18 O 1.42898 * 109.76742 * 187.87816 * 16 15 14 19 19 C 1.53034 * 107.92514 * 68.27221 * 16 15 14 20 20 C 1.50810 * 109.65631 * 312.70979 * 19 16 15 21 21 C 1.38619 * 118.12190 * 195.24006 * 20 19 16 22 22 C 1.38057 * 120.48472 * 179.97438 * 21 20 19 23 23 C 1.38311 * 119.88707 * 0.49193 * 22 21 20 24 24 C 1.37805 * 119.95172 * 359.65150 * 23 22 21 25 25 C 1.38375 * 122.01190 * 15.52497 * 20 19 16 26 26 H 1.09002 * 109.47268 * 273.86892 * 1 2 3 27 27 H 1.08998 * 109.47002 * 33.87618 * 1 2 3 28 28 H 1.09007 * 109.46820 * 153.87338 * 1 2 3 29 29 H 1.09004 * 109.47562 * 217.50080 * 3 2 1 30 30 H 1.09003 * 109.47132 * 337.49713 * 3 2 1 31 31 H 1.09000 * 109.47530 * 97.49933 * 3 2 1 32 32 H 1.09008 * 109.47273 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47647 * 300.00020 * 4 2 1 34 34 H 0.97000 * 119.99980 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47618 * 209.21492 * 13 2 1 36 36 H 1.09008 * 109.46865 * 89.21973 * 13 2 1 37 37 H 1.08995 * 109.60883 * 312.45946 * 15 14 13 38 38 H 1.09004 * 109.74276 * 192.03574 * 15 14 13 39 39 H 0.96699 * 113.99942 * 181.52994 * 18 16 15 40 40 H 1.08998 * 109.44536 * 192.65670 * 19 16 15 41 41 H 1.08997 * 109.41601 * 72.75008 * 19 16 15 42 42 H 1.07995 * 119.75243 * 0.20336 * 21 20 19 43 43 H 1.07994 * 120.05149 * 180.22916 * 22 21 20 44 44 H 1.07997 * 120.02050 * 179.66704 * 23 22 21 45 45 H 1.08003 * 119.78468 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9165 0.8668 -2.3806 7 6 1.8713 -0.4818 -3.7319 8 7 2.6274 -1.5511 -3.8525 9 14 1.2481 0.3983 -5.2571 10 1 2.2256 1.4407 -5.6613 11 1 1.0839 -0.5810 -6.3614 12 1 -0.0605 1.0350 -4.9615 13 6 2.0399 -0.7211 1.2494 14 7 1.0813 -0.5364 2.3470 15 6 1.2644 -1.5571 3.3809 16 6 2.5610 -1.2561 4.1431 17 1 3.3808 -1.1220 3.4374 18 8 2.8596 -2.3335 5.0331 19 6 2.3495 0.0319 4.9420 20 6 1.7269 1.0818 4.0563 21 6 1.7507 2.3988 4.4882 22 6 1.1954 3.3993 3.7158 23 6 0.6012 3.0869 2.5065 24 6 0.5711 1.7794 2.0721 25 6 1.1371 0.7642 2.8455 26 1 -0.3634 0.0693 1.0253 27 1 -0.3633 0.8532 -0.5728 28 1 -0.3633 -0.9227 -0.4526 29 1 2.9298 1.5133 -0.6256 30 1 1.2659 2.1015 -0.3933 31 1 2.2876 1.7403 1.0188 32 1 3.1301 -0.7209 -1.2493 33 1 1.6767 -1.7490 -1.2491 34 1 2.8618 -1.8825 -4.7334 35 1 3.0067 -0.3086 1.5379 36 1 2.1479 -1.7848 1.0363 37 1 1.3332 -2.5405 2.9160 38 1 0.4212 -1.5371 4.0714 39 1 3.6563 -2.1960 5.5637 40 1 3.3100 0.3918 5.3110 41 1 1.6892 -0.1692 5.7855 42 1 2.2104 2.6444 5.4340 43 1 1.2211 4.4235 4.0573 44 1 0.1613 3.8671 1.9031 45 1 0.1061 1.5385 1.1276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279424106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:22 Heat of formation + Delta-G solvation = -20.763861 kcal Electronic energy + Delta-G solvation = -24419.776606 eV Core-core repulsion = 21208.864830 eV Total energy + Delta-G solvation = -3210.911776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.18778 -38.73287 -38.44097 -36.43371 -34.64854 -33.30168 -31.20868 -30.26964 -29.12197 -28.04533 -27.47185 -25.59589 -24.64661 -23.77092 -22.71513 -20.74071 -19.52404 -18.47978 -18.29955 -17.74271 -16.85284 -16.52264 -16.37658 -15.85105 -15.64713 -15.39492 -15.04827 -14.90652 -14.52709 -14.28875 -14.17451 -14.03988 -13.90206 -13.46688 -13.03984 -12.88366 -12.82493 -12.68695 -12.49346 -12.25960 -12.20668 -12.16226 -11.87849 -11.77479 -11.58510 -11.41825 -10.96921 -10.92965 -10.74973 -10.50175 -10.07698 -9.44682 -8.76843 -8.13464 -6.20472 0.47498 0.57535 1.40914 1.41514 1.52138 2.43626 2.66129 2.95473 3.20753 3.24126 3.65996 3.72726 3.93254 3.96136 4.13369 4.18598 4.27246 4.34046 4.36392 4.46564 4.58620 4.65335 4.67751 4.71539 4.75576 4.84717 4.91880 4.98187 5.02872 5.06071 5.16286 5.26037 5.28893 5.42859 5.44301 5.52784 5.59068 5.60257 5.68165 5.75665 5.82960 5.89775 5.99592 6.09019 6.35742 6.52437 6.78988 6.94272 7.47053 8.98867 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020237 B = 0.004875 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.245749 B = 5742.454216 C = 6734.212949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.051 4.051 3 C -0.122 4.122 4 C 0.043 3.957 5 C -0.511 4.511 6 H 0.063 0.937 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.263 1.263 13 C 0.079 3.921 14 N -0.488 5.488 15 C 0.061 3.939 16 C 0.076 3.924 17 H 0.049 0.951 18 O -0.571 6.571 19 C -0.100 4.100 20 C -0.128 4.128 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.128 4.128 24 C -0.137 4.137 25 C 0.085 3.915 26 H 0.093 0.907 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.029 0.971 30 H 0.053 0.947 31 H 0.063 0.937 32 H -0.016 1.016 33 H -0.014 1.014 34 H 0.259 0.741 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.396 0.604 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.135 0.865 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 7.339 20.235 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.052 4.052 3 C -0.178 4.178 4 C 0.006 3.994 5 C -0.549 4.549 6 H 0.081 0.919 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.187 1.187 13 C -0.047 4.047 14 N -0.205 5.205 15 C -0.066 4.066 16 C 0.015 3.985 17 H 0.067 0.933 18 O -0.378 6.378 19 C -0.137 4.137 20 C -0.131 4.131 21 C -0.134 4.134 22 C -0.149 4.149 23 C -0.147 4.147 24 C -0.156 4.156 25 C -0.011 4.011 26 H 0.111 0.889 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.002 0.998 33 H 0.004 0.996 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.246 0.754 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.153 0.847 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.055 6.852 19.650 20.912 hybrid contribution 1.228 0.208 -0.888 1.529 sum -0.828 7.060 18.762 20.063 Atomic orbital electron populations 1.22074 0.94204 0.99916 1.01974 1.20496 0.96489 0.95294 0.92919 1.22224 1.00196 0.95317 1.00108 1.19134 0.93862 0.93985 0.92411 1.21546 1.30148 1.11874 0.91369 0.91869 1.25897 0.95715 0.95876 1.02504 1.70104 1.38914 1.24892 1.24009 0.85591 0.79119 0.78237 0.78993 1.20105 1.21289 1.18697 1.22233 0.91944 1.00369 0.90113 1.58773 1.50016 1.01478 1.10226 1.22172 0.96564 0.95047 0.92838 1.22322 0.97554 0.87008 0.91582 0.93329 1.86479 1.50792 1.43215 1.57333 1.21219 1.02130 0.92646 0.97694 1.20045 1.00484 0.95958 0.96620 1.21165 1.00397 0.91301 1.00582 1.21346 0.98756 1.00171 0.94659 1.21269 1.00210 0.95964 0.97222 1.22227 0.99184 0.92845 1.01324 1.18633 0.98505 0.89198 0.94759 0.88852 0.93799 0.95392 0.95207 0.92765 0.91842 0.99809 0.99592 0.93182 0.94564 0.91524 0.90022 0.89241 0.75404 0.88570 0.88916 0.84018 0.83857 0.84693 0.83496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 6.46 71.98 0.46 -4.33 16 2 C -0.05 -2.08 0.52 -52.18 -0.03 -2.11 16 3 C -0.12 -4.59 6.50 71.98 0.47 -4.12 16 4 C 0.04 2.27 3.52 29.85 0.11 2.38 16 5 C -0.51 -28.44 7.90 25.60 0.20 -28.24 16 6 H 0.06 3.37 6.72 -2.91 -0.02 3.35 16 7 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 8 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 9 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 13 C 0.08 2.78 3.93 86.31 0.34 3.12 16 14 N -0.49 -14.79 2.82 -695.79 -1.96 -16.75 16 15 C 0.06 1.63 5.47 86.52 0.47 2.10 16 16 C 0.08 1.71 3.54 30.73 0.11 1.82 16 17 H 0.05 1.22 6.87 -2.39 -0.02 1.20 16 18 O -0.57 -11.52 13.35 -148.98 -1.99 -13.50 16 19 C -0.10 -1.88 5.45 29.89 0.16 -1.71 16 20 C -0.13 -3.02 5.74 -19.71 -0.11 -3.13 16 21 C -0.12 -2.32 9.63 22.32 0.21 -2.11 16 22 C -0.13 -2.63 10.05 22.24 0.22 -2.40 16 23 C -0.13 -3.02 9.97 22.18 0.22 -2.80 16 24 C -0.14 -3.88 5.16 22.50 0.12 -3.77 16 25 C 0.08 2.40 4.43 38.30 0.17 2.57 16 26 H 0.09 3.21 4.35 -2.39 -0.01 3.20 16 27 H 0.04 1.66 6.61 -2.39 -0.02 1.64 16 28 H 0.03 1.16 7.87 -2.38 -0.02 1.14 16 29 H 0.03 1.24 7.65 -2.38 -0.02 1.22 16 30 H 0.05 1.96 6.71 -2.39 -0.02 1.95 16 31 H 0.06 2.15 4.74 -2.39 -0.01 2.13 16 32 H -0.02 -0.94 8.12 -2.38 -0.02 -0.96 16 33 H -0.01 -0.82 8.09 -2.39 -0.02 -0.84 16 34 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.04 1.27 6.85 -2.39 -0.02 1.25 16 36 H 0.07 2.49 7.38 -2.38 -0.02 2.48 16 37 H 0.08 2.28 7.76 -2.39 -0.02 2.26 16 38 H 0.09 2.26 8.11 -2.39 -0.02 2.24 16 39 H 0.40 4.30 9.09 -74.06 -0.67 3.63 16 40 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 43 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 44 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 45 H 0.15 4.56 2.74 -2.91 -0.01 4.55 16 Total: -1.00 -66.55 332.48 2.27 -64.27 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.32 Total: 19.04 kcal Atomic # 6 Polarization: -46.05 SS G_CDS: 3.59 Total: -42.46 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -1.68 Total: -74.07 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -1.99 Total: -13.50 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -66.55 2.27 -64.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279424106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.509 kcal (2) G-P(sol) polarization free energy of solvation -66.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds