Wall clock time and date at job start Tue Mar 31 2020 06:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47382 * 2 1 4 4 C 1.53000 * 109.47333 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47357 * 59.99643 * 4 3 2 6 6 C 1.53000 * 109.46816 * 299.99814 * 4 3 2 7 7 C 1.52997 * 109.47339 * 299.99833 * 6 4 3 8 8 C 1.50702 * 109.47237 * 180.02562 * 4 3 2 9 9 O 1.21283 * 120.00040 * 359.97438 * 8 4 3 10 10 N 1.34773 * 120.00002 * 179.97438 * 8 4 3 11 11 C 1.39245 * 119.99871 * 183.28445 * 10 8 4 12 12 C 1.39474 * 119.83202 * 322.15391 * 11 10 8 13 13 C 1.36385 * 120.16739 * 179.71910 * 12 11 10 14 14 C 1.40865 * 119.82380 * 0.55341 * 13 12 11 15 15 C 1.41156 * 120.16195 * 179.70023 * 14 13 12 16 16 H 1.07999 * 119.99716 * 158.02430 * 15 14 13 17 17 C 1.39903 * 120.00223 * 338.02448 * 15 14 13 18 18 N 1.30875 * 119.99952 * 327.61062 * 17 15 14 19 19 Si 1.86797 * 120.00037 * 147.60294 * 17 15 14 20 20 H 1.48499 * 109.46699 * 94.99261 * 19 17 15 21 21 H 1.48503 * 109.46969 * 214.98563 * 19 17 15 22 22 H 1.48496 * 109.47469 * 334.99246 * 19 17 15 23 23 C 1.40872 * 119.67683 * 359.72179 * 14 13 12 24 24 C 1.36372 * 119.82645 * 359.97438 * 23 14 13 25 25 H 1.08992 * 109.47338 * 60.00155 * 1 2 3 26 26 H 1.09002 * 109.47256 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46906 * 299.99772 * 1 2 3 28 28 H 1.09005 * 109.47124 * 239.99504 * 2 1 3 29 29 H 1.09003 * 109.47416 * 120.00313 * 2 1 3 30 30 H 1.08995 * 109.47593 * 60.00215 * 3 2 1 31 31 H 1.09008 * 109.47024 * 300.00031 * 3 2 1 32 32 H 1.08993 * 109.47341 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47498 * 300.00733 * 5 4 3 34 34 H 1.09008 * 109.47021 * 60.00305 * 5 4 3 35 35 H 1.09002 * 109.47077 * 60.00420 * 6 4 3 36 36 H 1.09001 * 109.46956 * 180.02562 * 6 4 3 37 37 H 1.09001 * 109.46870 * 60.00224 * 7 6 4 38 38 H 1.08992 * 109.47337 * 180.02562 * 7 6 4 39 39 H 1.09002 * 109.46990 * 300.00332 * 7 6 4 40 40 H 0.97000 * 120.00343 * 3.28438 * 10 8 4 41 41 H 1.07997 * 119.92234 * 359.97438 * 12 11 10 42 42 H 1.07995 * 120.08391 * 180.27280 * 13 12 11 43 43 H 0.96997 * 120.00310 * 179.97438 * 18 17 15 44 44 H 1.07997 * 120.08770 * 179.97438 * 23 14 13 45 45 H 1.08000 * 119.91677 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0795 0.7213 -1.2501 6 6 4.0804 0.7210 1.2483 7 6 3.5710 1.4421 2.4978 8 6 4.0724 2.8632 0.0000 9 8 3.2843 3.7851 0.0004 10 7 5.3974 3.1094 0.0001 11 6 5.8619 4.4203 0.0698 12 6 5.1850 5.4333 -0.6091 13 6 5.6307 6.7204 -0.5409 14 6 6.7845 7.0236 0.2081 15 6 7.2557 8.3523 0.2784 16 1 7.8911 8.6573 1.0967 17 6 6.8996 9.2741 -0.7119 18 7 6.7136 8.8723 -1.9435 19 14 6.6893 11.0784 -0.2763 20 1 7.9544 11.8051 -0.5534 21 1 5.5948 11.6607 -1.0938 22 1 6.3519 11.2038 1.1644 23 6 7.4662 5.9941 0.8864 24 6 7.0049 4.7128 0.8139 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6766 1.9563 -0.8901 32 1 5.1694 0.7217 -1.2508 33 1 3.7161 -0.3064 -1.2502 34 1 3.7158 1.2353 -2.1400 35 1 3.7171 -0.3067 1.2483 36 1 5.1704 0.7214 1.2481 37 1 2.4810 1.4421 2.4983 38 1 3.9350 0.9284 3.3876 39 1 3.9344 2.4697 2.4978 40 1 6.0275 2.3736 -0.0484 41 1 4.3033 5.1986 -1.1869 42 1 5.1029 7.5045 -1.0635 43 1 6.4663 9.5113 -2.6300 44 1 8.3517 6.2189 1.4622 45 1 7.5266 3.9223 1.3329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280418852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:24 Heat of formation + Delta-G solvation = -62.791028 kcal Electronic energy + Delta-G solvation = -23256.259968 eV Core-core repulsion = 20043.525757 eV Total energy + Delta-G solvation = -3212.734211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67429 -39.47407 -37.80630 -36.19882 -34.86293 -33.71532 -31.53332 -31.39709 -30.74813 -27.54224 -27.00635 -24.98496 -24.04046 -23.22731 -22.78142 -21.46283 -19.72143 -19.26739 -18.32397 -17.40117 -17.09495 -16.59250 -16.22622 -15.95382 -15.67104 -15.10561 -14.91072 -14.53562 -14.39247 -14.12011 -13.95468 -13.87555 -13.78303 -13.30459 -13.18656 -12.99388 -12.96446 -12.77446 -12.72389 -12.59451 -12.37550 -12.09767 -11.86451 -11.75715 -11.71822 -11.49253 -11.36643 -11.18932 -11.01712 -10.69741 -10.39283 -9.47707 -9.02438 -8.70432 -6.24452 0.83411 1.12128 1.34317 1.42065 1.52926 1.86829 2.16771 2.40788 2.64860 3.64723 3.67628 3.72827 3.88692 4.12968 4.25620 4.34306 4.40282 4.41983 4.45746 4.55563 4.69840 4.73002 4.80380 4.89387 4.91861 4.93892 5.02539 5.08051 5.13362 5.14439 5.18581 5.19774 5.25030 5.26283 5.30833 5.41101 5.45567 5.47671 5.60084 5.64969 5.86213 6.06936 6.09076 6.32018 6.63330 6.78613 6.88031 6.99452 7.49092 8.19334 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028205 B = 0.003450 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.492570 B = 8113.374658 C = 8467.759506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.095 4.095 4 C -0.069 4.069 5 C -0.142 4.142 6 C -0.106 4.106 7 C -0.158 4.158 8 C 0.506 3.494 9 O -0.583 6.583 10 N -0.642 5.642 11 C -0.006 4.006 12 C -0.089 4.089 13 C -0.199 4.199 14 C 0.081 3.919 15 C -0.503 4.503 16 H 0.083 0.917 17 C 0.047 3.953 18 N -0.803 5.803 19 Si 0.972 3.028 20 H -0.254 1.254 21 H -0.268 1.268 22 H -0.259 1.259 23 C -0.233 4.233 24 C -0.090 4.090 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.045 0.955 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.019 0.981 40 H 0.412 0.588 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.292 0.708 44 H 0.109 0.891 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.288 -18.482 3.062 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.133 4.133 4 C -0.072 4.072 5 C -0.199 4.199 6 C -0.143 4.143 7 C -0.215 4.215 8 C 0.296 3.704 9 O -0.463 6.463 10 N -0.287 5.287 11 C -0.099 4.099 12 C -0.109 4.109 13 C -0.219 4.219 14 C 0.079 3.921 15 C -0.531 4.531 16 H 0.101 0.899 17 C -0.172 4.172 18 N -0.427 5.427 19 Si 0.791 3.209 20 H -0.179 1.179 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.253 4.253 24 C -0.110 4.110 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.064 0.936 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.039 0.961 40 H 0.250 0.750 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.127 0.873 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.884 -17.809 2.810 18.965 hybrid contribution 0.080 1.268 -0.240 1.292 sum -5.804 -16.542 2.570 17.718 Atomic orbital electron populations 1.21780 0.95873 1.02173 1.01313 1.21643 0.95852 0.94561 1.03509 1.21440 0.92072 0.98352 1.01425 1.20892 0.97388 0.89447 0.99464 1.21961 1.01912 1.01708 0.94321 1.21672 1.01390 1.00357 0.90918 1.21860 1.01583 0.99221 0.98831 1.21480 0.81782 0.92512 0.74669 1.90661 1.56395 1.48193 1.51025 1.42895 1.07289 1.06247 1.72224 1.17175 1.00741 0.84769 1.07205 1.20422 0.98587 0.93399 0.98527 1.20608 0.99085 0.95168 1.06997 1.17908 0.90301 0.93596 0.90322 1.19736 1.29589 0.95052 1.08711 0.89937 1.26809 0.91005 1.06203 0.93209 1.69967 1.30649 1.39981 1.02057 0.85370 0.79443 0.76108 0.79935 1.17862 1.19215 1.18254 1.20751 1.02435 0.92725 1.09357 1.20401 0.96209 0.96616 0.97794 0.93577 0.91148 0.93437 0.90270 0.90075 0.92982 0.93830 0.91069 0.88085 0.93595 0.87403 0.90443 0.92358 0.90645 0.96137 0.75042 0.89372 0.89946 0.89753 0.87317 0.85030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.91 71.98 0.71 -1.66 16 2 C -0.12 -1.82 5.23 30.59 0.16 -1.66 16 3 C -0.09 -2.25 3.20 30.59 0.10 -2.16 16 4 C -0.07 -1.59 0.43 -52.93 -0.02 -1.61 16 5 C -0.14 -2.52 8.02 71.98 0.58 -1.94 16 6 C -0.11 -1.85 4.54 30.59 0.14 -1.71 16 7 C -0.16 -3.45 9.31 71.98 0.67 -2.78 16 8 C 0.51 17.84 5.02 87.66 0.44 18.28 16 9 O -0.58 -26.89 13.61 -3.04 -0.04 -26.93 16 10 N -0.64 -22.36 5.08 -303.11 -1.54 -23.90 16 11 C -0.01 -0.26 6.25 38.56 0.24 -0.01 16 12 C -0.09 -4.74 8.59 22.14 0.19 -4.55 16 13 C -0.20 -11.40 8.74 22.48 0.20 -11.20 16 14 C 0.08 4.58 5.57 -21.28 -0.12 4.46 16 15 C -0.50 -27.86 8.94 23.39 0.21 -27.65 16 16 H 0.08 4.36 8.02 -2.91 -0.02 4.34 16 17 C 0.05 2.43 4.77 85.24 0.41 2.83 16 18 N -0.80 -43.37 11.78 21.82 0.26 -43.11 16 19 Si 0.97 38.99 29.66 68.60 2.03 41.02 16 20 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 21 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 22 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 23 C -0.23 -11.53 9.74 22.48 0.22 -11.31 16 24 C -0.09 -3.93 9.90 22.14 0.22 -3.71 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.08 1.00 6.43 -2.38 -0.02 0.98 16 29 H 0.08 1.00 6.43 -2.39 -0.02 0.99 16 30 H 0.05 1.44 6.39 -2.39 -0.02 1.42 16 31 H 0.04 1.22 8.10 -2.38 -0.02 1.20 16 32 H 0.07 1.11 7.49 -2.39 -0.02 1.09 16 33 H 0.10 1.17 6.43 -2.39 -0.02 1.16 16 34 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.11 1.23 6.43 -2.39 -0.02 1.22 16 36 H 0.08 1.20 7.64 -2.39 -0.02 1.18 16 37 H 0.06 1.27 6.43 -2.39 -0.02 1.26 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.02 0.59 7.22 -2.39 -0.02 0.57 16 40 H 0.41 10.82 7.67 -92.71 -0.71 10.11 16 41 H 0.09 4.81 6.46 -2.91 -0.02 4.79 16 42 H 0.08 4.96 6.52 -2.91 -0.02 4.95 16 43 H 0.29 14.14 8.30 -92.71 -0.77 13.37 16 44 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 45 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -70.06 352.38 5.32 -64.74 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: 0.27 Total: 34.55 kcal Atomic # 6 Polarization: -50.72 SS G_CDS: 4.34 Total: -46.38 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -1.28 Total: -67.01 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.04 Total: -26.93 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -70.06 5.32 -64.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280418852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.952 kcal (2) G-P(sol) polarization free energy of solvation -70.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds