Wall clock time and date at job start Tue Mar 31 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 112.91183 * 2 1 4 4 C 1.53789 * 113.61549 * 131.24833 * 2 1 3 5 5 H 1.08998 * 113.60931 * 25.35056 * 4 2 1 6 6 N 1.46898 * 113.61407 * 254.53260 * 4 2 1 7 7 C 1.46898 * 110.99934 * 156.52538 * 6 4 2 8 8 C 1.52996 * 109.47356 * 179.97438 * 7 6 4 9 9 C 1.50702 * 109.47114 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00493 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99785 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99809 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00039 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47370 * 59.99587 * 13 11 9 15 15 H 1.48498 * 109.47517 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46972 * 299.99811 * 13 11 9 17 17 C 1.53778 * 87.17563 * 139.93815 * 4 2 1 18 18 C 1.53781 * 87.08402 * 334.61389 * 17 4 2 19 19 H 1.09005 * 113.61533 * 270.88593 * 18 17 4 20 20 O 1.42893 * 113.61929 * 140.06315 * 18 17 4 21 21 C 1.35900 * 117.00268 * 86.34742 * 20 18 17 22 22 C 1.38728 * 120.05916 * 174.45659 * 21 20 18 23 23 C 1.38143 * 119.94624 * 179.69828 * 22 21 20 24 24 C 1.38264 * 120.05382 * 0.60015 * 23 22 21 25 25 C 1.38270 * 120.11145 * 359.67263 * 24 23 22 26 26 C 1.38143 * 120.05570 * 0.02701 * 25 24 23 27 27 H 1.08995 * 109.47365 * 288.74991 * 1 2 3 28 28 H 1.09003 * 109.46722 * 48.74908 * 1 2 3 29 29 H 1.09001 * 109.47167 * 168.74613 * 1 2 3 30 30 H 1.08995 * 109.47380 * 191.24907 * 3 2 1 31 31 H 1.08998 * 109.46534 * 311.25328 * 3 2 1 32 32 H 1.09001 * 109.46945 * 71.24514 * 3 2 1 33 33 H 1.00898 * 110.99979 * 280.47981 * 6 4 2 34 34 H 1.09001 * 109.47190 * 59.99876 * 7 6 4 35 35 H 1.09008 * 109.47112 * 300.00282 * 7 6 4 36 36 H 1.08999 * 109.47531 * 300.00237 * 8 7 6 37 37 H 1.09001 * 109.46510 * 60.00513 * 8 7 6 38 38 H 0.96999 * 119.99652 * 180.02562 * 12 11 9 39 39 H 1.09004 * 113.61438 * 89.15611 * 17 4 2 40 40 H 1.08992 * 113.61908 * 220.06598 * 17 4 2 41 41 H 1.08004 * 120.03107 * 359.97438 * 22 21 20 42 42 H 1.08001 * 119.97416 * 180.31757 * 23 22 21 43 43 H 1.08001 * 119.94913 * 179.70015 * 24 23 22 44 44 H 1.08001 * 119.97138 * 180.02562 * 25 24 23 45 45 H 1.07996 * 120.02701 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9291 1.0594 5 1 1.4939 -1.7527 1.3501 6 7 2.7106 -0.2144 2.2120 7 6 2.7692 -1.0847 3.3939 8 6 3.3619 -0.3074 4.5709 9 6 3.4213 -1.2001 5.7836 10 1 3.0717 -2.2200 5.7210 11 6 3.9220 -0.7147 6.9731 12 7 4.3482 0.5271 7.0491 13 14 3.9964 -1.8214 8.4760 14 1 4.8507 -2.9998 8.1814 15 1 4.5715 -1.0669 9.6184 16 1 2.6264 -2.2776 8.8230 17 6 3.1927 -1.3160 0.0014 18 6 2.1481 -0.9307 -1.0593 19 1 1.4955 -1.7544 -1.3489 20 8 2.6998 -0.2390 -2.1813 21 6 3.1891 -0.9998 -3.1956 22 6 3.6336 -0.3978 -4.3637 23 6 4.1363 -1.1730 -5.3908 24 6 4.1852 -2.5485 -5.2601 25 6 3.7375 -3.1514 -4.0990 26 6 3.2396 -2.3802 -3.0666 27 1 -0.3634 0.3303 0.9731 28 1 -0.3633 0.6776 -0.7727 29 1 -0.3633 -1.0079 -0.2006 30 1 3.1954 1.3517 -0.2005 31 1 1.6428 2.0077 -0.7726 32 1 1.9627 1.8726 0.9731 33 1 3.6214 0.1610 1.9939 34 1 3.3962 -1.9496 3.1776 35 1 1.7636 -1.4196 3.6487 36 1 4.3674 0.0272 4.3159 37 1 2.7350 0.5577 4.7874 38 1 4.7008 0.8684 7.8858 39 1 4.0725 -0.6724 0.0017 40 1 3.4431 -2.3768 0.0024 41 1 3.5908 0.6763 -4.4685 42 1 4.4873 -0.7044 -6.2984 43 1 4.5741 -3.1533 -6.0660 44 1 3.7771 -4.2260 -3.9992 45 1 2.8905 -2.8515 -2.1598 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284198441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:02 Heat of formation + Delta-G solvation = -4.392168 kcal Electronic energy + Delta-G solvation = -22650.778883 eV Core-core repulsion = 19440.577037 eV Total energy + Delta-G solvation = -3210.201846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89926 -39.21473 -36.88734 -34.64118 -32.56875 -31.26921 -30.45437 -29.95920 -28.74557 -27.29942 -24.92815 -23.58225 -22.85514 -22.33932 -21.61994 -20.61972 -18.40700 -18.35379 -16.46460 -16.19542 -15.95509 -15.49475 -15.04818 -14.81642 -14.48724 -14.41446 -13.94827 -13.88322 -13.58712 -13.24561 -13.00781 -12.64476 -12.38038 -12.14886 -12.05769 -11.93676 -11.71469 -11.62965 -11.37291 -11.15549 -10.95533 -10.92060 -10.70732 -10.65673 -10.33701 -10.16656 -9.94637 -9.33010 -9.20601 -9.15664 -8.36019 -8.32750 -7.78483 -6.00312 -4.03034 1.14012 1.27163 3.09970 3.32685 3.37251 3.39374 3.60578 4.33218 4.41409 4.43673 4.59295 4.65026 4.70892 4.73043 4.92101 5.03532 5.17546 5.20309 5.29391 5.35545 5.36794 5.45990 5.50250 5.60777 5.77609 5.81747 5.82941 5.94062 6.06091 6.08210 6.15457 6.21635 6.24323 6.29491 6.32803 6.39973 6.41172 6.57653 6.65367 6.95905 7.36788 7.47627 7.72052 7.80535 7.93321 8.07554 8.42509 9.04035 9.60691 11.11071 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025263 B = 0.002812 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.055598 B = 9955.738929 C =10448.887019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.057 4.057 3 C -0.114 4.114 4 C 0.081 3.919 5 H 0.097 0.903 6 N -0.672 5.672 7 C 0.066 3.934 8 C 0.025 3.975 9 C -0.523 4.523 10 H 0.053 0.947 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.190 4.190 18 C 0.064 3.936 19 H 0.092 0.908 20 O -0.296 6.296 21 C 0.136 3.864 22 C -0.158 4.158 23 C -0.083 4.083 24 C -0.166 4.166 25 C -0.082 4.082 26 C -0.208 4.208 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.340 0.660 34 H 0.015 0.985 35 H 0.058 0.942 36 H 0.013 0.987 37 H 0.025 0.975 38 H 0.261 0.739 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 -3.788 -24.114 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.058 4.058 3 C -0.172 4.172 4 C -0.031 4.031 5 H 0.115 0.885 6 N -0.301 5.301 7 C -0.062 4.062 8 C -0.012 4.012 9 C -0.561 4.561 10 H 0.071 0.929 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.230 4.230 18 C 0.007 3.993 19 H 0.109 0.891 20 O -0.209 6.209 21 C 0.091 3.909 22 C -0.176 4.176 23 C -0.101 4.101 24 C -0.184 4.184 25 C -0.100 4.100 26 C -0.226 4.226 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.159 0.841 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.031 0.969 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.268 -3.151 -23.739 24.325 hybrid contribution 0.870 -1.539 0.665 1.889 sum -3.398 -4.690 -23.074 23.790 Atomic orbital electron populations 1.21731 0.93678 1.01304 1.02551 1.22231 0.95412 0.96310 0.91879 1.21307 1.00199 0.93387 1.02265 1.22810 0.95860 0.95166 0.89291 0.88529 1.60421 1.29771 1.36367 1.03534 1.22199 0.99814 0.94018 0.90199 1.19060 0.95809 0.95757 0.90572 1.21132 1.41686 0.98079 0.95242 0.92857 1.25001 0.95422 0.95051 0.98870 1.69959 1.42126 1.14606 1.26526 0.86652 0.78337 0.80586 0.82366 1.20318 1.21260 1.20220 1.24339 0.99001 1.02099 0.97519 1.24223 0.95865 0.96269 0.82918 0.89059 1.86159 1.72962 1.34908 1.26847 1.19101 0.93578 0.89947 0.88321 1.20474 1.04447 1.00624 0.92082 1.20951 0.97454 0.93726 0.97962 1.21031 1.03965 0.94913 0.98483 1.20967 0.96440 0.99654 0.92915 1.21350 1.07043 0.93008 1.01225 0.91276 0.92621 0.92993 0.92689 0.93088 0.90674 0.84099 0.96647 0.92338 0.96857 0.95637 0.92918 0.88781 0.91210 0.85348 0.85606 0.86162 0.86011 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.20 37.15 0.34 -1.17 16 2 C -0.06 -0.70 1.35 -153.60 -0.21 -0.91 16 3 C -0.11 -1.47 7.80 37.16 0.29 -1.18 16 4 C 0.08 1.11 3.61 -66.90 -0.24 0.86 16 5 H 0.10 1.31 7.84 -51.93 -0.41 0.90 16 6 N -0.67 -11.43 5.56 -105.87 -0.59 -12.02 16 7 C 0.07 1.34 5.48 -3.83 -0.02 1.32 16 8 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 9 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 10 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 13 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 C -0.19 -2.36 6.72 -25.92 -0.17 -2.53 16 18 C 0.06 0.74 2.61 -25.82 -0.07 0.67 16 19 H 0.09 0.96 6.94 -51.93 -0.36 0.60 16 20 O -0.30 -3.73 9.25 -19.42 -0.18 -3.90 16 21 C 0.14 1.61 6.68 -39.22 -0.26 1.35 16 22 C -0.16 -1.66 9.99 -39.44 -0.39 -2.06 16 23 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 24 C -0.17 -1.46 10.04 -39.56 -0.40 -1.85 16 25 C -0.08 -0.77 10.04 -39.60 -0.40 -1.17 16 26 C -0.21 -2.24 8.93 -39.43 -0.35 -2.59 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.51 7.95 -51.93 -0.41 0.10 16 30 H 0.05 0.72 7.20 -51.93 -0.37 0.35 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.06 7.77 -51.93 -0.40 0.65 16 33 H 0.34 5.75 8.09 -39.29 -0.32 5.43 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 1.20 8.13 -51.92 -0.42 0.78 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.09 1.25 7.35 -51.93 -0.38 0.87 16 40 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 41 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 42 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 45 H 0.13 1.27 5.81 -52.49 -0.30 0.97 16 LS Contribution 363.33 15.07 5.48 5.48 Total: -1.00 -30.22 363.33 -9.98 -40.20 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.56 Total: 3.19 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -2.84 Total: -23.39 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.15 Total: -38.21 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.18 Total: -3.90 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.22 -9.98 -40.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284198441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.805 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds