Wall clock time and date at job start Tue Mar 31 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 112.91183 * 2 1 4 4 C 1.53789 * 113.61549 * 131.24833 * 2 1 3 5 5 H 1.08998 * 113.60931 * 25.35056 * 4 2 1 6 6 N 1.46898 * 113.61407 * 254.53260 * 4 2 1 7 7 C 1.46898 * 110.99934 * 156.52538 * 6 4 2 8 8 C 1.52996 * 109.47356 * 179.97438 * 7 6 4 9 9 C 1.50702 * 109.47114 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00493 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99785 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99809 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00039 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47370 * 59.99587 * 13 11 9 15 15 H 1.48498 * 109.47517 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46972 * 299.99811 * 13 11 9 17 17 C 1.53778 * 87.17563 * 139.93815 * 4 2 1 18 18 C 1.53781 * 87.08402 * 334.61389 * 17 4 2 19 19 H 1.09005 * 113.61533 * 270.88593 * 18 17 4 20 20 O 1.42893 * 113.61929 * 140.06315 * 18 17 4 21 21 C 1.35900 * 117.00268 * 86.34742 * 20 18 17 22 22 C 1.38728 * 120.05916 * 174.45659 * 21 20 18 23 23 C 1.38143 * 119.94624 * 179.69828 * 22 21 20 24 24 C 1.38264 * 120.05382 * 0.60015 * 23 22 21 25 25 C 1.38270 * 120.11145 * 359.67263 * 24 23 22 26 26 C 1.38143 * 120.05570 * 0.02701 * 25 24 23 27 27 H 1.08995 * 109.47365 * 288.74991 * 1 2 3 28 28 H 1.09003 * 109.46722 * 48.74908 * 1 2 3 29 29 H 1.09001 * 109.47167 * 168.74613 * 1 2 3 30 30 H 1.08995 * 109.47380 * 191.24907 * 3 2 1 31 31 H 1.08998 * 109.46534 * 311.25328 * 3 2 1 32 32 H 1.09001 * 109.46945 * 71.24514 * 3 2 1 33 33 H 1.00898 * 110.99979 * 280.47981 * 6 4 2 34 34 H 1.09001 * 109.47190 * 59.99876 * 7 6 4 35 35 H 1.09008 * 109.47112 * 300.00282 * 7 6 4 36 36 H 1.08999 * 109.47531 * 300.00237 * 8 7 6 37 37 H 1.09001 * 109.46510 * 60.00513 * 8 7 6 38 38 H 0.96999 * 119.99652 * 180.02562 * 12 11 9 39 39 H 1.09004 * 113.61438 * 89.15611 * 17 4 2 40 40 H 1.08992 * 113.61908 * 220.06598 * 17 4 2 41 41 H 1.08004 * 120.03107 * 359.97438 * 22 21 20 42 42 H 1.08001 * 119.97416 * 180.31757 * 23 22 21 43 43 H 1.08001 * 119.94913 * 179.70015 * 24 23 22 44 44 H 1.08001 * 119.97138 * 180.02562 * 25 24 23 45 45 H 1.07996 * 120.02701 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9291 1.0594 5 1 1.4939 -1.7527 1.3501 6 7 2.7106 -0.2144 2.2120 7 6 2.7692 -1.0847 3.3939 8 6 3.3619 -0.3074 4.5709 9 6 3.4213 -1.2001 5.7836 10 1 3.0717 -2.2200 5.7210 11 6 3.9220 -0.7147 6.9731 12 7 4.3482 0.5271 7.0491 13 14 3.9964 -1.8214 8.4760 14 1 4.8507 -2.9998 8.1814 15 1 4.5715 -1.0669 9.6184 16 1 2.6264 -2.2776 8.8230 17 6 3.1927 -1.3160 0.0014 18 6 2.1481 -0.9307 -1.0593 19 1 1.4955 -1.7544 -1.3489 20 8 2.6998 -0.2390 -2.1813 21 6 3.1891 -0.9998 -3.1956 22 6 3.6336 -0.3978 -4.3637 23 6 4.1363 -1.1730 -5.3908 24 6 4.1852 -2.5485 -5.2601 25 6 3.7375 -3.1514 -4.0990 26 6 3.2396 -2.3802 -3.0666 27 1 -0.3634 0.3303 0.9731 28 1 -0.3633 0.6776 -0.7727 29 1 -0.3633 -1.0079 -0.2006 30 1 3.1954 1.3517 -0.2005 31 1 1.6428 2.0077 -0.7726 32 1 1.9627 1.8726 0.9731 33 1 3.6214 0.1610 1.9939 34 1 3.3962 -1.9496 3.1776 35 1 1.7636 -1.4196 3.6487 36 1 4.3674 0.0272 4.3159 37 1 2.7350 0.5577 4.7874 38 1 4.7008 0.8684 7.8858 39 1 4.0725 -0.6724 0.0017 40 1 3.4431 -2.3768 0.0024 41 1 3.5908 0.6763 -4.4685 42 1 4.4873 -0.7044 -6.2984 43 1 4.5741 -3.1533 -6.0660 44 1 3.7771 -4.2260 -3.9992 45 1 2.8905 -2.8515 -2.1598 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284198441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:02 Heat of formation + Delta-G solvation = -20.635386 kcal Electronic energy + Delta-G solvation = -22651.483242 eV Core-core repulsion = 19440.577037 eV Total energy + Delta-G solvation = -3210.906205 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.84378 -40.07922 -37.80917 -36.29480 -34.51019 -32.03025 -31.58754 -30.83136 -30.34012 -28.31463 -26.54065 -24.89854 -23.71173 -23.27855 -22.58825 -22.37822 -19.47870 -19.19141 -18.46524 -17.18065 -16.75242 -16.61485 -16.40032 -16.25350 -15.70484 -15.54031 -15.15845 -14.90595 -14.48493 -14.28736 -14.23652 -14.07948 -13.72824 -13.36797 -13.18797 -13.01129 -12.97294 -12.81375 -12.60156 -12.50786 -12.43567 -12.27502 -11.96478 -11.83530 -11.70360 -11.58364 -11.35508 -11.10044 -10.94381 -10.55936 -9.92741 -9.19668 -9.09578 -8.20177 -6.31685 0.41841 0.52473 1.40089 1.43259 1.51190 2.22676 2.40740 2.87260 3.13278 3.33049 3.36175 3.45079 3.71982 3.87810 3.96456 4.03220 4.23550 4.30809 4.31458 4.49314 4.51128 4.51826 4.54678 4.60713 4.66235 4.77731 4.82193 4.89571 4.95345 5.06229 5.08816 5.10818 5.11949 5.20724 5.38204 5.43491 5.45980 5.49742 5.55035 5.62584 5.69309 5.80005 5.91864 6.16117 6.30416 6.50736 6.54763 6.85928 7.37577 8.91794 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025263 B = 0.002812 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.055598 B = 9955.738929 C =10448.887019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 C -0.110 4.110 4 C 0.075 3.925 5 H 0.104 0.896 6 N -0.676 5.676 7 C 0.086 3.914 8 C 0.032 3.968 9 C -0.544 4.544 10 H 0.061 0.939 11 C 0.000 4.000 12 N -0.932 5.932 13 Si 0.966 3.034 14 H -0.267 1.267 15 H -0.284 1.284 16 H -0.266 1.266 17 C -0.184 4.184 18 C 0.076 3.924 19 H 0.108 0.892 20 O -0.310 6.310 21 C 0.111 3.889 22 C -0.173 4.173 23 C -0.084 4.084 24 C -0.166 4.166 25 C -0.089 4.089 26 C -0.219 4.219 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.339 0.661 34 H 0.019 0.981 35 H 0.060 0.940 36 H -0.011 1.011 37 H -0.006 1.006 38 H 0.264 0.736 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.131 0.869 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 -5.791 -25.483 26.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.058 4.058 3 C -0.167 4.167 4 C -0.036 4.036 5 H 0.122 0.878 6 N -0.305 5.305 7 C -0.043 4.043 8 C -0.006 4.006 9 C -0.583 4.583 10 H 0.079 0.921 11 C -0.198 4.198 12 N -0.572 5.572 13 Si 0.791 3.209 14 H -0.192 1.192 15 H -0.209 1.209 16 H -0.191 1.191 17 C -0.224 4.224 18 C 0.019 3.981 19 H 0.125 0.875 20 O -0.223 6.223 21 C 0.066 3.934 22 C -0.191 4.191 23 C -0.102 4.102 24 C -0.184 4.184 25 C -0.107 4.107 26 C -0.238 4.238 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.158 0.842 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.007 0.993 37 H 0.012 0.988 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.149 0.851 42 H 0.169 0.831 43 H 0.163 0.837 44 H 0.160 0.840 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.629 -5.163 -25.137 26.076 hybrid contribution 1.015 -0.881 0.981 1.664 sum -3.614 -6.044 -24.155 25.161 Atomic orbital electron populations 1.21717 0.92519 1.02510 1.02268 1.22200 0.96310 0.95661 0.91594 1.21234 0.99885 0.94063 1.01517 1.22927 0.96576 0.95734 0.88396 0.87792 1.60334 1.29873 1.36361 1.03956 1.21794 0.99263 0.93504 0.89705 1.18912 0.94110 0.95042 0.92495 1.21594 1.41631 0.98737 0.96327 0.92070 1.25985 0.94839 0.96561 1.02440 1.70104 1.42987 1.16616 1.27523 0.85484 0.78890 0.78597 0.77965 1.19151 1.20895 1.19076 1.24239 0.98465 1.02413 0.97269 1.24095 0.95324 0.96075 0.82578 0.87452 1.86121 1.73476 1.35525 1.27225 1.19361 0.94901 0.90568 0.88601 1.20713 1.04892 1.01186 0.92352 1.21299 0.96579 0.93993 0.98338 1.21411 1.02982 0.95165 0.98888 1.21295 0.95894 1.00753 0.92754 1.21492 1.07553 0.92764 1.01957 0.92334 0.91781 0.91417 0.93482 0.92225 0.92339 0.84250 0.96316 0.92136 0.99307 0.98773 0.92767 0.89981 0.90236 0.85061 0.83106 0.83662 0.84008 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.20 71.98 0.66 -2.12 16 2 C -0.06 -1.35 1.35 -51.59 -0.07 -1.42 16 3 C -0.11 -2.85 7.80 71.98 0.56 -2.29 16 4 C 0.07 2.00 3.61 45.44 0.16 2.17 16 5 H 0.10 2.67 7.84 -2.39 -0.02 2.65 16 6 N -0.68 -23.39 5.56 -488.85 -2.72 -26.11 16 7 C 0.09 3.56 5.48 86.30 0.47 4.03 16 8 C 0.03 1.70 5.23 29.85 0.16 1.86 16 9 C -0.54 -31.15 9.11 25.60 0.23 -30.91 16 10 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 11 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 12 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 13 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 17 C -0.18 -4.45 6.72 31.12 0.21 -4.24 16 18 C 0.08 1.67 2.61 31.18 0.08 1.75 16 19 H 0.11 2.03 6.94 -2.38 -0.02 2.01 16 20 O -0.31 -7.62 9.25 -92.42 -0.86 -8.47 16 21 C 0.11 2.52 6.68 22.51 0.15 2.67 16 22 C -0.17 -3.47 9.99 22.36 0.22 -3.25 16 23 C -0.08 -1.33 10.04 22.25 0.22 -1.10 16 24 C -0.17 -2.48 10.04 22.28 0.22 -2.26 16 25 C -0.09 -1.48 10.04 22.25 0.22 -1.26 16 26 C -0.22 -4.40 8.93 22.37 0.20 -4.20 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.20 7.95 -2.39 -0.02 1.18 16 30 H 0.05 1.27 7.20 -2.39 -0.02 1.25 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.70 7.77 -2.39 -0.02 1.68 16 33 H 0.34 11.86 8.09 -89.70 -0.73 11.13 16 34 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 35 H 0.06 2.47 8.13 -2.38 -0.02 2.45 16 36 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 37 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.08 2.19 7.35 -2.38 -0.02 2.18 16 40 H 0.08 1.75 7.88 -2.39 -0.02 1.73 16 41 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 42 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 43 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 45 H 0.13 2.41 5.81 -2.91 -0.02 2.39 16 Total: -1.00 -65.61 363.33 3.14 -62.47 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.23 Total: 22.97 kcal Atomic # 6 Polarization: -44.30 SS G_CDS: 4.18 Total: -40.13 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -2.43 Total: -83.24 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.86 Total: -8.47 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -65.61 3.14 -62.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284198441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.833 kcal (2) G-P(sol) polarization free energy of solvation -65.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds