Wall clock time and date at job start Tue Mar 31 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 112.90725 * 2 1 4 4 C 1.54053 * 113.69868 * 228.67269 * 2 1 3 5 5 H 1.09000 * 113.68738 * 334.60849 * 4 2 1 6 6 N 1.46901 * 113.62216 * 105.50138 * 4 2 1 7 7 C 1.46893 * 111.00287 * 201.99993 * 6 4 2 8 8 C 1.53001 * 109.47105 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.46938 * 180.02562 * 8 7 6 10 10 H 1.08005 * 120.00481 * 0.02562 * 9 8 7 11 11 C 1.37887 * 119.99961 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00096 * 180.02562 * 11 9 8 13 13 Si 1.86793 * 120.00000 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47014 * 89.99898 * 13 11 9 15 15 H 1.48501 * 109.47379 * 210.00279 * 13 11 9 16 16 H 1.48504 * 109.47230 * 330.00246 * 13 11 9 17 17 C 1.53773 * 87.07787 * 220.05144 * 4 2 1 18 18 C 1.53780 * 87.08511 * 25.42898 * 17 4 2 19 19 H 1.09004 * 113.61668 * 219.93929 * 18 17 4 20 20 O 1.42897 * 113.61735 * 89.10982 * 18 17 4 21 21 C 1.35904 * 116.99512 * 87.21007 * 20 18 17 22 22 C 1.38734 * 120.05426 * 174.99666 * 21 20 18 23 23 C 1.38145 * 119.94292 * 179.74445 * 22 21 20 24 24 C 1.38271 * 120.05612 * 0.25372 * 23 22 21 25 25 C 1.38268 * 120.11062 * 359.97438 * 24 23 22 26 26 C 1.38142 * 120.05303 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.47342 * 308.25999 * 1 2 3 28 28 H 1.09008 * 109.47238 * 68.25433 * 1 2 3 29 29 H 1.08997 * 109.46893 * 188.25526 * 1 2 3 30 30 H 1.08996 * 109.47221 * 171.75154 * 3 2 1 31 31 H 1.09006 * 109.47119 * 291.74222 * 3 2 1 32 32 H 1.08994 * 109.47385 * 51.74274 * 3 2 1 33 33 H 1.00897 * 110.99576 * 78.04413 * 6 4 2 34 34 H 1.08994 * 109.47443 * 300.00672 * 7 6 4 35 35 H 1.09005 * 109.46787 * 60.00260 * 7 6 4 36 36 H 1.08997 * 109.47529 * 300.00111 * 8 7 6 37 37 H 1.08996 * 109.47223 * 60.00621 * 8 7 6 38 38 H 0.96995 * 120.00505 * 179.97438 * 12 11 9 39 39 H 1.09004 * 113.61749 * 270.87691 * 17 4 2 40 40 H 1.09000 * 113.61544 * 139.97739 * 17 4 2 41 41 H 1.07999 * 120.02842 * 0.02562 * 22 21 20 42 42 H 1.08001 * 119.96857 * 180.27420 * 23 22 21 43 43 H 1.07997 * 119.94210 * 179.97438 * 24 23 22 44 44 H 1.07996 * 119.96803 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.02392 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1491 -0.9315 -1.0593 5 1 1.4994 -1.7571 -1.3499 6 7 2.7151 -0.2180 -2.2120 7 6 2.8082 -1.0998 -3.3831 8 6 3.4001 -0.3229 -4.5607 9 6 3.4950 -1.2274 -5.7623 10 1 3.1657 -2.2536 -5.6932 11 6 4.0024 -0.7448 -6.9502 12 7 4.0847 -1.5339 -7.9989 13 14 4.5713 1.0304 -7.0701 14 1 6.0093 1.1147 -6.7089 15 1 4.3804 1.5186 -8.4595 16 1 3.7767 1.8690 -6.1371 17 6 3.1940 -1.3142 0.0020 18 6 2.1460 -0.9290 1.0594 19 1 2.5637 -0.3988 1.9153 20 8 1.2918 -2.0099 1.4391 21 6 1.7259 -2.8156 2.4437 22 6 0.9035 -3.8198 2.9336 23 6 1.3491 -4.6409 3.9512 24 6 2.6116 -4.4593 4.4851 25 6 3.4314 -3.4562 4.0018 26 6 2.9904 -2.6325 2.9843 27 1 -0.3634 0.6363 0.8069 28 1 -0.3634 0.3808 -0.9546 29 1 -0.3633 -1.0170 0.1476 30 1 3.2037 1.3482 0.1474 31 1 1.9163 1.8923 -0.9546 32 1 1.6808 1.9918 0.8069 33 1 3.6148 0.1785 -1.9854 34 1 3.4497 -1.9491 -3.1483 35 1 1.8134 -1.4582 -3.6480 36 1 2.7582 0.5262 -4.7954 37 1 4.3948 0.0358 -4.2962 38 1 4.4413 -1.1944 -8.8346 39 1 4.0725 -0.6688 0.0025 40 1 3.4466 -2.3745 0.0036 41 1 -0.0825 -3.9624 2.5166 42 1 0.7109 -5.4256 4.3298 43 1 2.9579 -5.1020 5.2808 44 1 4.4172 -3.3166 4.4201 45 1 3.6312 -1.8493 2.6068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284198444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:05 Heat of formation + Delta-G solvation = 1.145922 kcal Electronic energy + Delta-G solvation = -22776.337079 eV Core-core repulsion = 19566.375382 eV Total energy + Delta-G solvation = -3209.961697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02251 -39.22634 -36.89197 -34.74531 -32.52766 -31.29720 -30.54838 -30.03588 -29.15721 -27.36276 -25.06656 -23.52802 -22.93501 -22.23432 -21.85906 -20.46382 -18.76214 -17.96526 -16.79807 -16.25749 -15.97515 -15.60302 -15.15408 -14.94379 -14.41003 -14.30716 -14.17019 -13.88397 -13.64739 -13.18876 -12.98944 -12.69858 -12.46059 -12.39528 -12.22855 -12.09250 -11.81018 -11.74542 -11.60143 -11.24898 -11.09649 -10.98189 -10.88750 -10.37972 -10.20757 -10.02559 -9.83030 -9.52694 -9.23255 -9.21840 -8.53309 -8.37416 -7.88160 -6.03802 -4.02127 1.11323 1.23666 2.93355 3.31857 3.39526 3.45161 3.57321 4.30557 4.35930 4.46526 4.48831 4.63962 4.70713 4.74631 4.88845 5.06243 5.09691 5.15888 5.23570 5.30701 5.32995 5.43460 5.49037 5.56627 5.72405 5.76128 5.80350 5.89668 5.97091 6.02285 6.10554 6.16222 6.18534 6.20468 6.30214 6.31007 6.39985 6.42314 6.60668 6.77739 7.14555 7.30710 7.38524 7.62062 7.75643 7.91195 8.53992 9.00578 9.58490 11.09638 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023530 B = 0.003054 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.689367 B = 9166.373477 C = 9652.281575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C -0.120 4.120 4 C 0.086 3.914 5 H 0.100 0.900 6 N -0.679 5.679 7 C 0.074 3.926 8 C -0.009 4.009 9 C -0.521 4.521 10 H 0.070 0.930 11 C 0.066 3.934 12 N -0.904 5.904 13 Si 0.882 3.118 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.263 1.263 17 C -0.195 4.195 18 C 0.066 3.934 19 H 0.080 0.920 20 O -0.289 6.289 21 C 0.135 3.865 22 C -0.156 4.156 23 C -0.082 4.082 24 C -0.164 4.164 25 C -0.082 4.082 26 C -0.206 4.206 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.336 0.664 34 H 0.021 0.979 35 H 0.064 0.936 36 H 0.025 0.975 37 H 0.008 0.992 38 H 0.263 0.737 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 -0.077 26.435 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.062 4.062 3 C -0.177 4.177 4 C -0.025 4.025 5 H 0.118 0.882 6 N -0.308 5.308 7 C -0.054 4.054 8 C -0.047 4.047 9 C -0.560 4.560 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.543 5.543 13 Si 0.709 3.291 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.187 1.187 17 C -0.234 4.234 18 C 0.009 3.991 19 H 0.097 0.903 20 O -0.202 6.202 21 C 0.090 3.910 22 C -0.174 4.174 23 C -0.101 4.101 24 C -0.182 4.182 25 C -0.100 4.100 26 C -0.225 4.225 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.155 0.845 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.026 0.974 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.853 0.190 25.893 26.344 hybrid contribution 1.449 0.234 0.120 1.472 sum -3.404 0.424 26.013 26.238 Atomic orbital electron populations 1.21574 0.93428 1.02160 1.01692 1.22201 0.96493 0.94641 0.92877 1.21456 0.99835 0.93509 1.02942 1.23093 0.95553 0.95077 0.88826 0.88235 1.60461 1.30234 1.35536 1.04531 1.21978 1.00234 0.93741 0.89494 1.19543 0.95252 0.96664 0.93266 1.21081 1.42077 0.98816 0.93985 0.91147 1.25016 0.95223 0.97627 0.95606 1.69913 1.46524 1.35968 1.01920 0.86743 0.79325 0.85749 0.77280 1.20443 1.21449 1.18743 1.24302 0.98208 1.02677 0.98250 1.23396 0.92149 0.87398 0.96192 0.90253 1.86071 1.45484 1.39606 1.49024 1.19082 0.92642 0.91213 0.88099 1.20473 1.00533 0.96713 0.99700 1.20961 0.95923 0.98005 0.95164 1.21047 0.95015 1.00001 1.02166 1.20966 0.99321 0.94343 0.95378 1.21329 0.96332 1.03607 1.01220 0.93078 0.91893 0.91866 0.92826 0.90015 0.92967 0.84548 0.96031 0.91725 0.95673 0.97404 0.92736 0.88802 0.90777 0.85256 0.85509 0.86099 0.85969 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.00 37.15 0.33 -1.19 16 2 C -0.06 -0.71 1.35 -153.55 -0.21 -0.92 16 3 C -0.12 -1.27 8.31 37.16 0.31 -0.96 16 4 C 0.09 1.19 3.55 -66.76 -0.24 0.95 16 5 H 0.10 1.52 7.86 -51.93 -0.41 1.12 16 6 N -0.68 -10.96 5.66 -105.72 -0.60 -11.56 16 7 C 0.07 1.48 5.49 -3.83 -0.02 1.46 16 8 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 9 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 10 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 11 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 12 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 13 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 17 C -0.19 -2.32 6.74 -25.92 -0.17 -2.49 16 18 C 0.07 0.73 2.68 -25.92 -0.07 0.66 16 19 H 0.08 0.79 7.00 -51.93 -0.36 0.43 16 20 O -0.29 -3.57 8.65 -19.44 -0.17 -3.74 16 21 C 0.14 1.57 6.68 -39.22 -0.26 1.31 16 22 C -0.16 -1.63 9.99 -39.43 -0.39 -2.02 16 23 C -0.08 -0.73 10.04 -39.60 -0.40 -1.13 16 24 C -0.16 -1.41 10.04 -39.56 -0.40 -1.81 16 25 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 26 C -0.21 -2.16 8.95 -39.43 -0.35 -2.51 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 29 H 0.06 0.77 7.07 -51.93 -0.37 0.40 16 30 H 0.05 0.52 7.32 -51.93 -0.38 0.14 16 31 H 0.08 0.98 7.89 -51.93 -0.41 0.57 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.34 5.08 8.05 -39.29 -0.32 4.76 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 36 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 37 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.09 1.01 7.32 -51.93 -0.38 0.63 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 42 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 45 H 0.13 1.22 6.02 -52.48 -0.32 0.90 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -31.12 359.46 -9.58 -40.70 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.52 Total: 2.97 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -2.82 Total: -23.65 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.18 Total: -38.96 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.17 Total: -3.74 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.12 -9.58 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284198444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.849 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds