Wall clock time and date at job start Tue Mar 31 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 112.90725 * 2 1 4 4 C 1.54053 * 113.69868 * 228.67269 * 2 1 3 5 5 H 1.09000 * 113.68738 * 334.60849 * 4 2 1 6 6 N 1.46901 * 113.62216 * 105.50138 * 4 2 1 7 7 C 1.46893 * 111.00287 * 201.99993 * 6 4 2 8 8 C 1.53001 * 109.47105 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.46938 * 180.02562 * 8 7 6 10 10 H 1.08005 * 120.00481 * 0.02562 * 9 8 7 11 11 C 1.37887 * 119.99961 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00096 * 180.02562 * 11 9 8 13 13 Si 1.86793 * 120.00000 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47014 * 89.99898 * 13 11 9 15 15 H 1.48501 * 109.47379 * 210.00279 * 13 11 9 16 16 H 1.48504 * 109.47230 * 330.00246 * 13 11 9 17 17 C 1.53773 * 87.07787 * 220.05144 * 4 2 1 18 18 C 1.53780 * 87.08511 * 25.42898 * 17 4 2 19 19 H 1.09004 * 113.61668 * 219.93929 * 18 17 4 20 20 O 1.42897 * 113.61735 * 89.10982 * 18 17 4 21 21 C 1.35904 * 116.99512 * 87.21007 * 20 18 17 22 22 C 1.38734 * 120.05426 * 174.99666 * 21 20 18 23 23 C 1.38145 * 119.94292 * 179.74445 * 22 21 20 24 24 C 1.38271 * 120.05612 * 0.25372 * 23 22 21 25 25 C 1.38268 * 120.11062 * 359.97438 * 24 23 22 26 26 C 1.38142 * 120.05303 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.47342 * 308.25999 * 1 2 3 28 28 H 1.09008 * 109.47238 * 68.25433 * 1 2 3 29 29 H 1.08997 * 109.46893 * 188.25526 * 1 2 3 30 30 H 1.08996 * 109.47221 * 171.75154 * 3 2 1 31 31 H 1.09006 * 109.47119 * 291.74222 * 3 2 1 32 32 H 1.08994 * 109.47385 * 51.74274 * 3 2 1 33 33 H 1.00897 * 110.99576 * 78.04413 * 6 4 2 34 34 H 1.08994 * 109.47443 * 300.00672 * 7 6 4 35 35 H 1.09005 * 109.46787 * 60.00260 * 7 6 4 36 36 H 1.08997 * 109.47529 * 300.00111 * 8 7 6 37 37 H 1.08996 * 109.47223 * 60.00621 * 8 7 6 38 38 H 0.96995 * 120.00505 * 179.97438 * 12 11 9 39 39 H 1.09004 * 113.61749 * 270.87691 * 17 4 2 40 40 H 1.09000 * 113.61544 * 139.97739 * 17 4 2 41 41 H 1.07999 * 120.02842 * 0.02562 * 22 21 20 42 42 H 1.08001 * 119.96857 * 180.27420 * 23 22 21 43 43 H 1.07997 * 119.94210 * 179.97438 * 24 23 22 44 44 H 1.07996 * 119.96803 * 180.02562 * 25 24 23 45 45 H 1.08003 * 120.02392 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1491 -0.9315 -1.0593 5 1 1.4994 -1.7571 -1.3499 6 7 2.7151 -0.2180 -2.2120 7 6 2.8082 -1.0998 -3.3831 8 6 3.4001 -0.3229 -4.5607 9 6 3.4950 -1.2274 -5.7623 10 1 3.1657 -2.2536 -5.6932 11 6 4.0024 -0.7448 -6.9502 12 7 4.0847 -1.5339 -7.9989 13 14 4.5713 1.0304 -7.0701 14 1 6.0093 1.1147 -6.7089 15 1 4.3804 1.5186 -8.4595 16 1 3.7767 1.8690 -6.1371 17 6 3.1940 -1.3142 0.0020 18 6 2.1460 -0.9290 1.0594 19 1 2.5637 -0.3988 1.9153 20 8 1.2918 -2.0099 1.4391 21 6 1.7259 -2.8156 2.4437 22 6 0.9035 -3.8198 2.9336 23 6 1.3491 -4.6409 3.9512 24 6 2.6116 -4.4593 4.4851 25 6 3.4314 -3.4562 4.0018 26 6 2.9904 -2.6325 2.9843 27 1 -0.3634 0.6363 0.8069 28 1 -0.3634 0.3808 -0.9546 29 1 -0.3633 -1.0170 0.1476 30 1 3.2037 1.3482 0.1474 31 1 1.9163 1.8923 -0.9546 32 1 1.6808 1.9918 0.8069 33 1 3.6148 0.1785 -1.9854 34 1 3.4497 -1.9491 -3.1483 35 1 1.8134 -1.4582 -3.6480 36 1 2.7582 0.5262 -4.7954 37 1 4.3948 0.0358 -4.2962 38 1 4.4413 -1.1944 -8.8346 39 1 4.0725 -0.6688 0.0025 40 1 3.4466 -2.3745 0.0036 41 1 -0.0825 -3.9624 2.5166 42 1 0.7109 -5.4256 4.3298 43 1 2.9579 -5.1020 5.2808 44 1 4.4172 -3.3166 4.4201 45 1 3.6312 -1.8493 2.6068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284198444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:05 Heat of formation + Delta-G solvation = -16.744804 kcal Electronic energy + Delta-G solvation = -22777.112879 eV Core-core repulsion = 19566.375382 eV Total energy + Delta-G solvation = -3210.737497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.93170 -40.06193 -37.80816 -36.32281 -34.53830 -32.04265 -31.79106 -30.99122 -30.47642 -28.23836 -26.60650 -24.80085 -23.78581 -23.20600 -22.68947 -22.31381 -19.65817 -19.03113 -18.81103 -17.10031 -16.75546 -16.59599 -16.41230 -16.24788 -15.95424 -15.36966 -15.12478 -15.10424 -14.74597 -14.40441 -14.29876 -14.03913 -13.57273 -13.49336 -13.30312 -13.13044 -13.01095 -12.89007 -12.72395 -12.44667 -12.25376 -12.12406 -11.92801 -11.87187 -11.70076 -11.66080 -11.42790 -11.07836 -10.85765 -10.77383 -9.94243 -9.23047 -9.13541 -8.30509 -6.35582 0.40293 0.50234 1.36574 1.39721 1.52817 2.11358 2.36865 2.85243 3.05099 3.21905 3.39492 3.45312 3.74824 3.93380 3.99588 4.02512 4.20036 4.29350 4.32945 4.41742 4.50261 4.51360 4.53467 4.59183 4.67404 4.72775 4.80018 4.88974 4.93208 4.95701 5.04781 5.09461 5.13463 5.24134 5.30287 5.36028 5.44988 5.49009 5.51846 5.54828 5.61053 5.64088 5.90427 6.15440 6.24950 6.50257 6.56512 6.73766 7.29347 8.86474 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023530 B = 0.003054 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.689367 B = 9166.373477 C = 9652.281575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.055 4.055 3 C -0.118 4.118 4 C 0.074 3.926 5 H 0.077 0.923 6 N -0.672 5.672 7 C 0.089 3.911 8 C -0.002 4.002 9 C -0.536 4.536 10 H 0.027 0.973 11 C 0.003 3.997 12 N -0.953 5.953 13 Si 0.957 3.043 14 H -0.264 1.264 15 H -0.285 1.285 16 H -0.245 1.245 17 C -0.186 4.186 18 C 0.075 3.925 19 H 0.099 0.901 20 O -0.306 6.306 21 C 0.110 3.890 22 C -0.174 4.174 23 C -0.085 4.085 24 C -0.166 4.166 25 C -0.088 4.088 26 C -0.216 4.216 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.346 0.654 34 H 0.012 0.988 35 H 0.048 0.952 36 H 0.024 0.976 37 H 0.021 0.979 38 H 0.267 0.733 39 H 0.112 0.888 40 H 0.061 0.939 41 H 0.130 0.870 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.122 1.734 29.049 29.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.056 4.056 3 C -0.175 4.175 4 C -0.037 4.037 5 H 0.095 0.905 6 N -0.301 5.301 7 C -0.040 4.040 8 C -0.040 4.040 9 C -0.575 4.575 10 H 0.046 0.954 11 C -0.194 4.194 12 N -0.593 5.593 13 Si 0.780 3.220 14 H -0.189 1.189 15 H -0.211 1.211 16 H -0.168 1.168 17 C -0.225 4.225 18 C 0.018 3.982 19 H 0.117 0.883 20 O -0.220 6.220 21 C 0.065 3.935 22 C -0.192 4.192 23 C -0.103 4.103 24 C -0.184 4.184 25 C -0.106 4.106 26 C -0.235 4.235 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.165 0.835 34 H 0.030 0.970 35 H 0.067 0.933 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.148 0.852 42 H 0.168 0.832 43 H 0.164 0.836 44 H 0.162 0.838 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.861 1.994 28.543 28.872 hybrid contribution 1.086 -0.494 -0.648 1.358 sum -2.775 1.500 27.895 28.072 Atomic orbital electron populations 1.21547 0.93592 1.01787 1.01736 1.22192 0.96413 0.95214 0.91746 1.21452 1.00680 0.92391 1.02944 1.23151 0.96454 0.95415 0.88697 0.90503 1.60379 1.30864 1.34753 1.04151 1.21607 0.98748 0.93537 0.90142 1.19415 0.96080 0.95835 0.92624 1.21433 1.41783 0.97926 0.96323 0.95417 1.26057 0.95263 1.03066 0.94967 1.70072 1.47857 1.38611 1.02792 0.85554 0.79511 0.79199 0.77729 1.18941 1.21081 1.16822 1.24254 0.98511 1.02290 0.97487 1.23325 0.91397 0.87080 0.96434 0.88327 1.86044 1.46086 1.40168 1.49679 1.19349 0.93646 0.91906 0.88621 1.20707 1.00810 0.97161 1.00540 1.21298 0.96533 0.98033 0.94421 1.21427 0.94694 0.99896 1.02339 1.21311 1.00400 0.94021 0.94896 1.21491 0.96013 1.04265 1.01732 0.91472 0.92864 0.92960 0.91627 0.91332 0.91147 0.83459 0.96968 0.93293 0.95741 0.96084 0.92427 0.86986 0.92035 0.85213 0.83167 0.83603 0.83782 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.00 71.98 0.65 -2.28 16 2 C -0.05 -1.21 1.35 -51.56 -0.07 -1.28 16 3 C -0.12 -2.18 8.31 71.98 0.60 -1.58 16 4 C 0.07 2.02 3.55 45.53 0.16 2.18 16 5 H 0.08 2.46 7.86 -2.39 -0.02 2.44 16 6 N -0.67 -21.15 5.66 -488.40 -2.76 -23.92 16 7 C 0.09 3.61 5.49 86.30 0.47 4.09 16 8 C 0.00 -0.08 4.30 29.85 0.13 0.05 16 9 C -0.54 -31.73 9.66 25.60 0.25 -31.48 16 10 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 11 C 0.00 0.19 5.47 84.66 0.46 0.65 16 12 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 13 Si 0.96 44.76 27.47 68.60 1.88 46.64 16 14 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 15 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 16 H -0.24 -10.66 6.54 99.48 0.65 -10.01 16 17 C -0.19 -4.21 6.74 31.12 0.21 -4.00 16 18 C 0.07 1.55 2.68 31.12 0.08 1.64 16 19 H 0.10 1.71 7.00 -2.38 -0.02 1.69 16 20 O -0.31 -7.49 8.65 -92.47 -0.80 -8.29 16 21 C 0.11 2.49 6.68 22.51 0.15 2.64 16 22 C -0.17 -3.56 9.99 22.37 0.22 -3.33 16 23 C -0.09 -1.37 10.04 22.26 0.22 -1.14 16 24 C -0.17 -2.46 10.04 22.28 0.22 -2.23 16 25 C -0.09 -1.42 10.04 22.25 0.22 -1.20 16 26 C -0.22 -4.22 8.95 22.36 0.20 -4.02 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.05 1.28 7.07 -2.39 -0.02 1.27 16 30 H 0.06 1.06 7.32 -2.39 -0.02 1.04 16 31 H 0.07 1.49 7.89 -2.38 -0.02 1.47 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.35 9.76 8.05 -89.70 -0.72 9.04 16 34 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.05 2.12 8.13 -2.38 -0.02 2.10 16 36 H 0.02 1.17 7.20 -2.39 -0.02 1.15 16 37 H 0.02 0.94 7.57 -2.39 -0.02 0.93 16 38 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 39 H 0.11 2.12 7.32 -2.38 -0.02 2.11 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 42 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 44 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.13 2.31 6.02 -2.91 -0.02 2.30 16 Total: -1.00 -68.88 359.46 2.99 -65.89 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.18 Total: 21.52 kcal Atomic # 6 Polarization: -45.50 SS G_CDS: 4.19 Total: -41.31 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -2.46 Total: -84.46 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.80 Total: -8.29 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.64 kcal Total: -68.88 2.99 -65.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284198444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.146 kcal (2) G-P(sol) polarization free energy of solvation -68.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds