Wall clock time and date at job start Tue Mar 31 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 112.90700 * 2 1 4 4 C 1.53785 * 113.61533 * 228.75139 * 2 1 3 5 5 H 1.08998 * 113.69046 * 156.32424 * 4 2 1 6 6 O 1.42905 * 113.61229 * 25.43142 * 4 2 1 7 7 C 1.35899 * 116.99934 * 175.80486 * 6 4 2 8 8 C 1.38735 * 120.05066 * 4.96437 * 7 6 4 9 9 C 1.38152 * 119.93809 * 179.69844 * 8 7 6 10 10 C 1.38272 * 120.05289 * 0.59704 * 9 8 7 11 11 C 1.38264 * 120.11250 * 359.67798 * 10 9 8 12 12 C 1.38144 * 120.05753 * 0.02562 * 11 10 9 13 13 C 1.53785 * 87.07936 * 270.88344 * 4 2 1 14 14 C 1.53778 * 87.08196 * 334.56474 * 13 4 2 15 15 H 1.08993 * 113.61949 * 270.88413 * 14 13 4 16 16 N 1.46898 * 113.61272 * 140.06208 * 14 13 4 17 17 C 1.46903 * 110.99937 * 105.86535 * 16 14 13 18 18 C 1.53001 * 109.47465 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.47203 * 179.97438 * 18 17 16 20 20 H 1.08009 * 119.99836 * 0.02562 * 19 18 17 21 21 C 1.37870 * 119.99963 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99985 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47224 * 89.99854 * 23 21 19 25 25 H 1.48504 * 109.47319 * 209.99990 * 23 21 19 26 26 H 1.48496 * 109.47047 * 330.00059 * 23 21 19 27 27 H 1.09004 * 109.47011 * 288.74587 * 1 2 3 28 28 H 1.08997 * 109.47111 * 48.74194 * 1 2 3 29 29 H 1.08996 * 109.47092 * 168.74679 * 1 2 3 30 30 H 1.09000 * 109.46797 * 191.24899 * 3 2 1 31 31 H 1.08995 * 109.47231 * 311.25651 * 3 2 1 32 32 H 1.09008 * 109.46945 * 71.25697 * 3 2 1 33 33 H 1.07997 * 120.03079 * 359.97438 * 8 7 6 34 34 H 1.07997 * 119.97246 * 180.27262 * 9 8 7 35 35 H 1.07996 * 119.94138 * 179.69593 * 10 9 8 36 36 H 1.08002 * 119.97100 * 179.97438 * 11 10 9 37 37 H 1.07992 * 120.02758 * 179.97438 * 12 11 10 38 38 H 1.08997 * 113.61353 * 220.01396 * 13 4 2 39 39 H 1.09001 * 113.69183 * 89.12615 * 13 4 2 40 40 H 1.00899 * 111.00575 * 341.91670 * 16 14 13 41 41 H 1.09003 * 109.46997 * 300.00460 * 17 16 14 42 42 H 1.09001 * 109.46808 * 59.99858 * 17 16 14 43 43 H 1.08998 * 109.46716 * 299.99830 * 18 17 16 44 44 H 1.08998 * 109.46815 * 59.99854 * 18 17 16 45 45 H 0.97001 * 120.00371 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4094 0.0000 4 6 2.1461 -0.9290 -1.0594 5 1 3.1591 -0.6508 -1.3501 6 8 1.2919 -1.1644 -2.1806 7 6 1.8015 -1.9051 -3.1997 8 6 3.0577 -2.4814 -3.0791 9 6 3.5709 -3.2391 -4.1141 10 6 2.8388 -3.4129 -5.2742 11 6 1.5890 -2.8348 -5.3989 12 6 1.0688 -2.0813 -4.3645 13 6 2.0930 -2.0426 -0.0001 14 6 2.1461 -0.9291 1.0593 15 1 3.1591 -0.6499 1.3490 16 7 1.2695 -1.1721 2.2127 17 6 2.0499 -1.5667 3.3932 18 6 1.1046 -1.8112 4.5712 19 6 1.9051 -2.2166 5.7818 20 1 2.9807 -2.2919 5.7176 21 6 1.2647 -2.4903 6.9717 22 7 -0.0448 -2.3981 7.0500 23 14 2.2571 -2.9922 8.4727 24 1 2.6371 -1.7805 9.2427 25 1 1.4393 -3.8873 9.3301 26 1 3.4838 -3.7075 8.0384 27 1 -0.3633 0.3303 0.9732 28 1 -0.3633 0.6777 -0.7725 29 1 -0.3633 -1.0079 -0.2005 30 1 3.1954 1.3517 -0.2005 31 1 1.6428 2.0078 -0.7725 32 1 1.9628 1.8726 0.9732 33 1 3.6320 -2.3416 -2.1753 34 1 4.5469 -3.6916 -4.0191 35 1 3.2438 -4.0015 -6.0840 36 1 1.0194 -2.9717 -6.3062 37 1 0.0928 -1.6297 -4.4626 38 1 2.9717 -2.6875 -0.0001 39 1 1.1575 -2.6019 0.0009 40 1 0.5686 -1.8644 1.9948 41 1 2.6018 -2.4810 3.1748 42 1 2.7505 -0.7715 3.6479 43 1 0.5525 -0.8971 4.7896 44 1 0.4043 -2.6065 4.3160 45 1 -0.4954 -2.5903 7.8873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284198450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:11 Heat of formation + Delta-G solvation = -4.327568 kcal Electronic energy + Delta-G solvation = -22650.397345 eV Core-core repulsion = 19440.198300 eV Total energy + Delta-G solvation = -3210.199045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.90674 -39.21902 -36.88646 -34.64422 -32.57094 -31.26779 -30.45315 -29.95911 -28.74624 -27.30081 -24.93218 -23.58662 -22.85237 -22.34166 -21.61983 -20.62126 -18.41108 -18.35486 -16.46430 -16.19584 -15.95469 -15.49574 -15.05025 -14.81783 -14.48434 -14.41223 -13.94913 -13.88536 -13.58818 -13.24569 -13.00757 -12.64724 -12.38133 -12.15065 -12.05706 -11.93840 -11.71432 -11.63164 -11.37605 -11.15526 -10.94937 -10.93127 -10.70451 -10.65592 -10.33446 -10.16790 -9.94979 -9.33263 -9.20591 -9.14621 -8.36375 -8.32708 -7.78471 -6.00532 -4.03223 1.13952 1.27175 3.10208 3.31379 3.37567 3.40474 3.60529 4.33484 4.41303 4.43703 4.59158 4.64744 4.70806 4.72985 4.91998 5.03591 5.17487 5.20273 5.29343 5.35448 5.36828 5.45954 5.50288 5.60772 5.77712 5.81753 5.82934 5.93998 6.06022 6.08187 6.15455 6.21579 6.24277 6.29444 6.32770 6.39964 6.41117 6.57616 6.65304 6.95828 7.36727 7.47598 7.72094 7.80496 7.93222 8.07387 8.42407 9.04051 9.60649 11.10868 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025343 B = 0.002809 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.556457 B = 9965.925088 C =10454.963638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.057 4.057 3 C -0.135 4.135 4 C 0.064 3.936 5 H 0.092 0.908 6 O -0.296 6.296 7 C 0.136 3.864 8 C -0.208 4.208 9 C -0.082 4.082 10 C -0.166 4.166 11 C -0.083 4.083 12 C -0.158 4.158 13 C -0.190 4.190 14 C 0.081 3.919 15 H 0.097 0.903 16 N -0.672 5.672 17 C 0.066 3.934 18 C 0.025 3.975 19 C -0.522 4.522 20 H 0.054 0.946 21 C 0.058 3.942 22 N -0.893 5.893 23 Si 0.892 3.108 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.275 1.275 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.340 0.660 41 H 0.015 0.985 42 H 0.058 0.942 43 H 0.025 0.975 44 H 0.013 0.987 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.928 2.010 -24.145 24.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.059 4.059 3 C -0.193 4.193 4 C 0.007 3.993 5 H 0.110 0.890 6 O -0.209 6.209 7 C 0.091 3.909 8 C -0.226 4.226 9 C -0.100 4.100 10 C -0.184 4.184 11 C -0.101 4.101 12 C -0.176 4.176 13 C -0.230 4.230 14 C -0.031 4.031 15 H 0.115 0.885 16 N -0.301 5.301 17 C -0.062 4.062 18 C -0.012 4.012 19 C -0.560 4.560 20 H 0.072 0.928 21 C -0.144 4.144 22 N -0.532 5.532 23 Si 0.720 3.280 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.159 0.841 41 H 0.034 0.966 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.032 0.968 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.554 2.743 -23.771 24.359 hybrid contribution 1.068 -1.390 0.669 1.876 sum 5.622 1.353 -23.103 23.815 Atomic orbital electron populations 1.21306 0.91804 1.01777 1.02261 1.22199 0.97591 0.94161 0.91902 1.21735 0.99720 0.95270 1.02548 1.24194 0.93987 0.98152 0.82924 0.89023 1.86167 1.41438 1.66668 1.26597 1.19103 0.92232 0.91330 0.88284 1.21349 0.96570 1.03471 1.01254 1.20969 0.99397 0.96688 0.92912 1.21030 0.95772 1.03123 0.98474 1.20951 0.95452 0.95782 0.97903 1.20471 1.01297 1.03803 0.92059 1.24343 1.03206 0.97900 0.97518 1.22806 0.96922 0.94121 0.89270 0.88524 1.60417 1.15150 1.50958 1.03569 1.22200 0.96720 0.97083 0.90223 1.19065 0.94283 0.97302 0.90585 1.21166 0.93369 1.46231 0.95278 0.92806 1.25001 0.94873 0.95612 0.98877 1.69969 1.07601 1.49303 1.26349 0.86595 0.80013 0.78487 0.82892 1.20623 1.21216 1.19953 0.90682 0.93083 0.92687 0.92995 0.92622 0.91286 0.85494 0.86011 0.86163 0.85606 0.85347 0.91227 0.88779 0.84098 0.96640 0.92341 0.95633 0.96847 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 7.79 37.16 0.29 -1.18 16 2 C -0.06 -0.71 1.35 -153.69 -0.21 -0.91 16 3 C -0.14 -1.51 9.19 37.16 0.34 -1.17 16 4 C 0.06 0.74 2.61 -25.91 -0.07 0.67 16 5 H 0.09 0.96 6.91 -51.93 -0.36 0.60 16 6 O -0.30 -3.72 9.24 -19.42 -0.18 -3.90 16 7 C 0.14 1.61 6.68 -39.22 -0.26 1.35 16 8 C -0.21 -2.24 8.94 -39.43 -0.35 -2.59 16 9 C -0.08 -0.77 10.04 -39.60 -0.40 -1.17 16 10 C -0.17 -1.46 10.04 -39.56 -0.40 -1.85 16 11 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 12 C -0.16 -1.66 9.99 -39.43 -0.39 -2.06 16 13 C -0.19 -2.36 6.75 -25.92 -0.17 -2.53 16 14 C 0.08 1.11 3.62 -66.90 -0.24 0.87 16 15 H 0.10 1.31 7.84 -51.93 -0.41 0.90 16 16 N -0.67 -11.43 5.57 -105.86 -0.59 -12.02 16 17 C 0.07 1.35 5.48 -3.82 -0.02 1.32 16 18 C 0.03 0.65 5.23 -27.88 -0.15 0.50 16 19 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 20 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 23 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 27 H 0.07 1.06 7.77 -51.93 -0.40 0.65 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.72 7.19 -51.93 -0.37 0.35 16 30 H 0.05 0.51 7.95 -51.93 -0.41 0.10 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 33 H 0.13 1.27 5.84 -52.49 -0.31 0.96 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 39 H 0.09 1.25 7.34 -51.93 -0.38 0.87 16 40 H 0.34 5.74 8.09 -39.29 -0.32 5.43 16 41 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -30.24 363.37 -9.98 -40.22 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -7.56 Total: 3.15 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -2.84 Total: -23.38 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.15 Total: -38.21 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.18 Total: -3.90 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.24 -9.98 -40.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284198450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.895 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds