Wall clock time and date at job start Tue Mar 31 2020 06:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46678 * 2 1 4 4 C 1.52995 * 109.47132 * 239.99968 * 2 1 3 5 5 C 1.50705 * 109.47360 * 59.99954 * 4 2 1 6 6 H 1.08001 * 119.99281 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00070 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99881 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99960 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47203 * 89.99982 * 9 7 5 11 11 H 1.48500 * 109.47069 * 210.00048 * 9 7 5 12 12 H 1.48499 * 109.47231 * 329.99883 * 9 7 5 13 13 C 1.53004 * 109.47095 * 119.99881 * 2 1 3 14 14 N 1.46903 * 109.46839 * 300.00381 * 13 2 1 15 15 C 1.46898 * 110.99593 * 180.02562 * 14 13 2 16 16 C 1.53005 * 109.47221 * 179.97438 * 15 14 13 17 17 H 1.09003 * 110.85053 * 51.27591 * 16 15 14 18 18 C 1.54702 * 110.93657 * 287.56050 * 16 15 14 19 19 O 1.43781 * 102.77446 * 267.06338 * 18 16 15 20 20 C 1.36142 * 109.20025 * 332.10279 * 19 18 16 21 21 C 1.39281 * 129.89668 * 198.80703 * 20 19 18 22 22 C 1.37930 * 120.24107 * 180.93966 * 21 20 19 23 23 C 1.38295 * 120.34503 * 0.02562 * 22 21 20 24 24 C 1.38344 * 119.76894 * 359.80931 * 23 22 21 25 25 C 1.37741 * 119.98031 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47770 * 299.99620 * 1 2 3 27 27 H 1.08994 * 109.47185 * 60.00483 * 1 2 3 28 28 H 1.09007 * 109.46847 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46663 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46918 * 299.99680 * 3 2 1 31 31 H 1.09001 * 109.47056 * 60.00110 * 3 2 1 32 32 H 1.09007 * 109.46934 * 179.97438 * 4 2 1 33 33 H 1.08994 * 109.47439 * 299.99651 * 4 2 1 34 34 H 0.96999 * 120.00046 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46776 * 180.02562 * 13 2 1 36 36 H 1.08994 * 109.47190 * 60.00524 * 13 2 1 37 37 H 1.00900 * 111.00127 * 303.95503 * 14 13 2 38 38 H 1.09002 * 109.47502 * 59.99933 * 15 14 13 39 39 H 1.09001 * 109.47323 * 299.99629 * 15 14 13 40 40 H 1.08999 * 110.75444 * 148.74041 * 18 16 15 41 41 H 1.09000 * 110.90733 * 25.45497 * 18 16 15 42 42 H 1.07997 * 119.88174 * 0.96705 * 21 20 19 43 43 H 1.07994 * 119.82894 * 180.28867 * 22 21 20 44 44 H 1.07997 * 120.11075 * 179.78141 * 23 22 21 45 45 H 1.07999 * 120.00898 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 1.4333 0.1386 -4.8057 9 14 2.9463 -1.9996 -3.9033 10 1 2.0887 -3.2110 -3.9488 11 1 3.7383 -1.9064 -5.1560 12 1 3.8667 -2.0880 -2.7413 13 6 2.0400 -0.7212 1.2493 14 7 1.5502 -0.0287 2.4487 15 6 2.0218 -0.6945 3.6703 16 6 1.4931 0.0541 4.8956 17 1 0.4155 0.2015 4.8250 18 6 2.2252 1.4048 5.0765 19 8 3.2987 1.0673 5.9715 20 6 2.9218 0.0122 6.7449 21 6 3.4443 -0.4411 7.9538 22 6 2.9137 -1.5581 8.5648 23 6 1.8593 -2.2381 7.9831 24 6 1.3324 -1.7923 6.7841 25 6 1.8579 -0.6745 6.1746 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1301 -0.7208 -1.2494 33 1 1.6768 -1.7489 -1.2492 34 1 1.6676 -0.1928 -5.6867 35 1 3.1300 -0.7208 1.2495 36 1 1.6768 -1.7489 1.2493 37 1 1.8196 0.9436 2.4402 38 1 3.1117 -0.6939 3.6869 39 1 1.6587 -1.7221 3.6874 40 1 1.5644 2.1449 5.5279 41 1 2.6150 1.7665 4.1250 42 1 4.2677 0.0842 8.4148 43 1 3.3210 -1.9010 9.5043 44 1 1.4491 -3.1143 8.4629 45 1 0.5087 -2.3202 6.3266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288585756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:42 Heat of formation + Delta-G solvation = -18.888727 kcal Electronic energy + Delta-G solvation = -22769.299744 eV Core-core repulsion = 19558.469280 eV Total energy + Delta-G solvation = -3210.830464 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.46629 -37.95003 -37.55842 -35.17251 -32.74019 -31.84493 -30.31725 -29.48884 -27.72240 -26.40109 -26.17437 -24.51928 -23.13708 -22.34600 -21.68796 -20.90744 -17.98984 -17.34597 -17.00598 -16.85783 -16.53229 -15.89773 -15.15270 -14.75213 -14.41640 -14.18351 -13.88980 -13.75229 -13.44532 -13.27962 -12.80298 -12.74537 -12.57877 -12.49441 -12.24823 -11.86410 -11.79403 -11.40519 -11.10080 -11.05847 -10.99552 -10.87671 -10.85354 -10.51170 -10.37166 -9.80492 -9.69805 -9.34312 -9.14937 -8.91096 -8.50060 -8.39830 -8.25027 -6.00321 -3.96526 1.01776 1.12016 3.03907 3.32101 3.39829 3.43225 3.44211 4.04536 4.27517 4.42263 4.48119 4.63793 4.76692 4.80322 5.00221 5.12649 5.17996 5.27856 5.32204 5.33153 5.35748 5.52759 5.61783 5.72096 5.79057 5.83459 5.86872 6.05481 6.12325 6.16979 6.21802 6.22831 6.34460 6.38891 6.56782 6.66698 6.78046 6.93880 7.04570 7.10387 7.16714 7.24166 7.31448 7.43576 7.54846 7.84890 8.59284 9.05434 9.62856 11.12784 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030693 B = 0.002910 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.030450 B = 9620.098676 C = 9892.090124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.049 4.049 3 C -0.131 4.131 4 C -0.005 4.005 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.685 5.685 15 C 0.071 3.929 16 C -0.075 4.075 17 H 0.108 0.892 18 C 0.053 3.947 19 O -0.305 6.305 20 C 0.107 3.893 21 C -0.143 4.143 22 C -0.087 4.087 23 C -0.152 4.152 24 C -0.066 4.066 25 C -0.164 4.164 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.012 0.988 33 H 0.010 0.990 34 H 0.261 0.739 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.337 0.663 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.240 -1.572 26.234 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.049 4.049 3 C -0.188 4.188 4 C -0.043 4.043 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.317 5.317 15 C -0.059 4.059 16 C -0.093 4.093 17 H 0.126 0.874 18 C -0.022 4.022 19 O -0.219 6.219 20 C 0.062 3.938 21 C -0.161 4.161 22 C -0.105 4.105 23 C -0.170 4.170 24 C -0.084 4.084 25 C -0.166 4.166 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.156 0.844 38 H 0.049 0.951 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.124 0.876 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.852 -1.761 26.014 26.087 hybrid contribution 1.431 -0.668 -0.387 1.626 sum 2.282 -2.429 25.626 25.842 Atomic orbital electron populations 1.21616 0.94478 1.00685 1.00713 1.20424 0.96233 0.95043 0.93212 1.21787 0.99639 0.96451 1.00951 1.19633 0.95835 0.95478 0.93314 1.21131 1.31433 1.13257 0.88667 0.90408 1.25015 0.95807 0.96742 0.96033 1.69905 1.46167 1.40614 0.97831 0.86849 0.81304 0.84042 0.77468 1.20434 1.21572 1.19200 1.22148 0.96408 0.98193 0.89365 1.60607 1.63628 1.06358 1.01101 1.21847 0.97124 0.98505 0.88376 1.21432 1.02532 0.93361 0.92024 0.87430 1.23946 0.87780 0.96734 0.93723 1.86849 1.39168 1.47177 1.48662 1.19639 0.94154 0.88383 0.91635 1.20264 1.03301 0.99387 0.93182 1.20871 0.95928 0.94173 0.99499 1.21045 0.98213 1.01170 0.96553 1.20372 0.99035 0.94358 0.94651 1.20749 1.00088 0.98625 0.97097 0.93687 0.92091 0.94219 0.94116 0.91056 0.94663 0.96940 0.97139 0.92883 0.95770 0.91460 0.84351 0.95096 0.90471 0.90180 0.87649 0.85584 0.85276 0.85518 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 8.06 37.16 0.30 -1.91 16 2 C -0.05 -0.92 0.60 -154.50 -0.09 -1.02 16 3 C -0.13 -2.35 7.89 37.16 0.29 -2.06 16 4 C 0.00 -0.11 3.11 -27.88 -0.09 -0.20 16 5 C -0.51 -13.92 8.21 -34.44 -0.28 -14.20 16 6 H 0.08 2.27 5.92 -52.49 -0.31 1.96 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.72 13.96 55.43 0.77 -26.95 16 9 Si 0.88 21.78 27.47 -169.99 -4.67 17.12 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 13 C 0.07 1.09 4.65 -3.82 -0.02 1.07 16 14 N -0.68 -9.07 5.71 -113.77 -0.65 -9.72 16 15 C 0.07 0.84 5.16 -3.82 -0.02 0.82 16 16 C -0.07 -0.77 3.34 -90.41 -0.30 -1.07 16 17 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 18 C 0.05 0.52 7.40 38.05 0.28 0.80 16 19 O -0.30 -3.69 11.11 -20.19 -0.22 -3.92 16 20 C 0.11 1.23 7.03 -38.96 -0.27 0.96 16 21 C -0.14 -1.39 10.06 -39.31 -0.40 -1.78 16 22 C -0.09 -0.70 10.02 -39.67 -0.40 -1.10 16 23 C -0.15 -1.24 10.07 -39.52 -0.40 -1.64 16 24 C -0.07 -0.62 10.03 -39.72 -0.40 -1.02 16 25 C -0.16 -1.76 5.63 -104.10 -0.59 -2.35 16 26 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 27 H 0.06 1.28 6.62 -51.93 -0.34 0.93 16 28 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 31 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 32 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 33 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.34 4.19 5.50 -39.29 -0.22 3.98 16 38 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.11 0.96 6.82 -51.93 -0.35 0.61 16 42 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 45 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -30.61 351.80 -9.25 -39.86 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.31 Total: 1.23 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -2.47 Total: -22.92 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.12 Total: -36.67 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.22 Total: -3.92 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.61 -9.25 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288585756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.976 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds