Wall clock time and date at job start Tue Mar 31 2020 06:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46678 * 2 1 4 4 C 1.52995 * 109.47132 * 239.99968 * 2 1 3 5 5 C 1.50705 * 109.47360 * 59.99954 * 4 2 1 6 6 H 1.08001 * 119.99281 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00070 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99881 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99960 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47203 * 89.99982 * 9 7 5 11 11 H 1.48500 * 109.47069 * 210.00048 * 9 7 5 12 12 H 1.48499 * 109.47231 * 329.99883 * 9 7 5 13 13 C 1.53004 * 109.47095 * 119.99881 * 2 1 3 14 14 N 1.46903 * 109.46839 * 300.00381 * 13 2 1 15 15 C 1.46898 * 110.99593 * 180.02562 * 14 13 2 16 16 C 1.53005 * 109.47221 * 179.97438 * 15 14 13 17 17 H 1.09003 * 110.85053 * 51.27591 * 16 15 14 18 18 C 1.54702 * 110.93657 * 287.56050 * 16 15 14 19 19 O 1.43781 * 102.77446 * 267.06338 * 18 16 15 20 20 C 1.36142 * 109.20025 * 332.10279 * 19 18 16 21 21 C 1.39281 * 129.89668 * 198.80703 * 20 19 18 22 22 C 1.37930 * 120.24107 * 180.93966 * 21 20 19 23 23 C 1.38295 * 120.34503 * 0.02562 * 22 21 20 24 24 C 1.38344 * 119.76894 * 359.80931 * 23 22 21 25 25 C 1.37741 * 119.98031 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47770 * 299.99620 * 1 2 3 27 27 H 1.08994 * 109.47185 * 60.00483 * 1 2 3 28 28 H 1.09007 * 109.46847 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46663 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46918 * 299.99680 * 3 2 1 31 31 H 1.09001 * 109.47056 * 60.00110 * 3 2 1 32 32 H 1.09007 * 109.46934 * 179.97438 * 4 2 1 33 33 H 1.08994 * 109.47439 * 299.99651 * 4 2 1 34 34 H 0.96999 * 120.00046 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46776 * 180.02562 * 13 2 1 36 36 H 1.08994 * 109.47190 * 60.00524 * 13 2 1 37 37 H 1.00900 * 111.00127 * 303.95503 * 14 13 2 38 38 H 1.09002 * 109.47502 * 59.99933 * 15 14 13 39 39 H 1.09001 * 109.47323 * 299.99629 * 15 14 13 40 40 H 1.08999 * 110.75444 * 148.74041 * 18 16 15 41 41 H 1.09000 * 110.90733 * 25.45497 * 18 16 15 42 42 H 1.07997 * 119.88174 * 0.96705 * 21 20 19 43 43 H 1.07994 * 119.82894 * 180.28867 * 22 21 20 44 44 H 1.07997 * 120.11075 * 179.78141 * 23 22 21 45 45 H 1.07999 * 120.00898 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 1.4333 0.1386 -4.8057 9 14 2.9463 -1.9996 -3.9033 10 1 2.0887 -3.2110 -3.9488 11 1 3.7383 -1.9064 -5.1560 12 1 3.8667 -2.0880 -2.7413 13 6 2.0400 -0.7212 1.2493 14 7 1.5502 -0.0287 2.4487 15 6 2.0218 -0.6945 3.6703 16 6 1.4931 0.0541 4.8956 17 1 0.4155 0.2015 4.8250 18 6 2.2252 1.4048 5.0765 19 8 3.2987 1.0673 5.9715 20 6 2.9218 0.0122 6.7449 21 6 3.4443 -0.4411 7.9538 22 6 2.9137 -1.5581 8.5648 23 6 1.8593 -2.2381 7.9831 24 6 1.3324 -1.7923 6.7841 25 6 1.8579 -0.6745 6.1746 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1301 -0.7208 -1.2494 33 1 1.6768 -1.7489 -1.2492 34 1 1.6676 -0.1928 -5.6867 35 1 3.1300 -0.7208 1.2495 36 1 1.6768 -1.7489 1.2493 37 1 1.8196 0.9436 2.4402 38 1 3.1117 -0.6939 3.6869 39 1 1.6587 -1.7221 3.6874 40 1 1.5644 2.1449 5.5279 41 1 2.6150 1.7665 4.1250 42 1 4.2677 0.0842 8.4148 43 1 3.3210 -1.9010 9.5043 44 1 1.4491 -3.1143 8.4629 45 1 0.5087 -2.3202 6.3266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288585756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:41 Heat of formation + Delta-G solvation = -36.756241 kcal Electronic energy + Delta-G solvation = -22770.074538 eV Core-core repulsion = 19558.469280 eV Total energy + Delta-G solvation = -3211.605258 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.21149 -39.28544 -38.32224 -36.37395 -34.49676 -33.12065 -31.02806 -30.34572 -29.51925 -27.91887 -27.31306 -25.76985 -24.10646 -23.49791 -22.80716 -21.72307 -19.50970 -18.87293 -18.10136 -17.77936 -17.48121 -16.64389 -16.35261 -16.15447 -15.82552 -15.36492 -15.04863 -14.85133 -14.63350 -14.39793 -14.13726 -13.97506 -13.74944 -13.61879 -13.40988 -13.14861 -12.78360 -12.75319 -12.56128 -12.48566 -12.24959 -12.17375 -12.00699 -11.83508 -11.69539 -11.62558 -11.36548 -10.99956 -10.82760 -10.70353 -9.84922 -9.37208 -9.11635 -8.22060 -6.22131 0.33652 0.42732 1.35161 1.36838 1.47591 2.32830 2.38958 2.74204 3.13012 3.13255 3.48115 3.62055 3.94700 3.95990 4.09172 4.17651 4.23051 4.27523 4.31947 4.45114 4.49753 4.54971 4.57286 4.67310 4.73438 4.75778 4.84234 4.90481 5.02001 5.04382 5.09521 5.11739 5.18945 5.36669 5.40087 5.45541 5.49307 5.52931 5.57064 5.61584 5.69712 5.75985 5.81586 6.02157 6.22974 6.40963 6.46449 6.85233 7.40359 8.94122 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030693 B = 0.002910 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.030450 B = 9620.098676 C = 9892.090124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.048 4.048 3 C -0.126 4.126 4 C -0.004 4.004 5 C -0.502 4.502 6 H 0.046 0.954 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.940 3.060 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.251 1.251 13 C 0.079 3.921 14 N -0.679 5.679 15 C 0.079 3.921 16 C -0.067 4.067 17 H 0.114 0.886 18 C 0.050 3.950 19 O -0.326 6.326 20 C 0.079 3.921 21 C -0.155 4.155 22 C -0.085 4.085 23 C -0.151 4.151 24 C -0.076 4.076 25 C -0.178 4.178 26 H 0.069 0.931 27 H 0.028 0.972 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.011 0.989 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.343 0.657 38 H 0.021 0.979 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.158 0.842 44 H 0.153 0.847 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.692 -3.034 28.974 29.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.049 4.049 3 C -0.183 4.183 4 C -0.042 4.042 5 C -0.540 4.540 6 H 0.064 0.936 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.765 3.235 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.175 1.175 13 C -0.050 4.050 14 N -0.312 5.312 15 C -0.051 4.051 16 C -0.086 4.086 17 H 0.132 0.868 18 C -0.025 4.025 19 O -0.241 6.241 20 C 0.034 3.966 21 C -0.174 4.174 22 C -0.103 4.103 23 C -0.169 4.169 24 C -0.094 4.094 25 C -0.180 4.180 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.029 0.971 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.163 0.837 38 H 0.039 0.961 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.128 0.872 42 H 0.152 0.848 43 H 0.175 0.825 44 H 0.170 0.830 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.303 -3.222 28.782 28.991 hybrid contribution 1.239 -0.170 -1.155 1.702 sum 2.541 -3.392 27.627 27.951 Atomic orbital electron populations 1.21517 0.94388 1.00442 1.00277 1.20350 0.96245 0.95408 0.92851 1.21711 0.99724 0.95875 1.00990 1.19610 0.95566 0.95450 0.93599 1.21426 1.30022 1.12185 0.90405 0.93576 1.25909 0.97599 1.00159 0.95813 1.70057 1.48330 1.42797 0.98438 0.85813 0.79728 0.80146 0.77858 1.19575 1.21478 1.17474 1.21877 0.96227 0.97909 0.88985 1.60538 1.63412 1.06627 1.00638 1.21783 0.96472 0.98590 0.88220 1.21333 1.02728 0.93344 0.91177 0.86797 1.24080 0.87657 0.96872 0.93867 1.86806 1.40247 1.47720 1.49277 1.19960 0.95187 0.88840 0.92577 1.20584 1.03736 1.00100 0.92983 1.21253 0.95512 0.93259 1.00269 1.21425 0.97778 1.01645 0.96027 1.20663 0.99469 0.94096 0.95204 1.20875 1.00391 0.99338 0.97379 0.91222 0.95293 0.94339 0.93889 0.94346 0.91282 0.97063 0.97034 0.92898 0.95806 0.91448 0.83656 0.96110 0.90561 0.88762 0.87195 0.84757 0.82464 0.82969 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.01 8.06 71.98 0.58 -3.43 16 2 C -0.05 -1.77 0.60 -52.18 -0.03 -1.80 16 3 C -0.13 -4.41 7.89 71.98 0.57 -3.84 16 4 C 0.00 -0.20 3.11 29.85 0.09 -0.11 16 5 C -0.50 -28.17 8.21 25.60 0.21 -27.96 16 6 H 0.05 2.82 5.92 -2.91 -0.02 2.81 16 7 C 0.00 0.05 5.47 84.66 0.46 0.52 16 8 N -0.95 -60.10 13.96 21.45 0.30 -59.81 16 9 Si 0.94 44.92 27.47 68.60 1.88 46.80 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 13 C 0.08 2.38 4.65 86.30 0.40 2.78 16 14 N -0.68 -16.37 5.71 -513.87 -2.94 -19.30 16 15 C 0.08 1.70 5.16 86.31 0.45 2.15 16 16 C -0.07 -1.26 3.34 -10.66 -0.04 -1.29 16 17 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 18 C 0.05 0.91 7.40 72.56 0.54 1.44 16 19 O -0.33 -7.67 11.11 -95.16 -1.06 -8.72 16 20 C 0.08 1.74 7.03 22.67 0.16 1.90 16 21 C -0.16 -2.80 10.06 22.45 0.23 -2.57 16 22 C -0.09 -1.16 10.02 22.21 0.22 -0.94 16 23 C -0.15 -2.04 10.07 22.31 0.22 -1.82 16 24 C -0.08 -1.26 10.03 22.18 0.22 -1.04 16 25 C -0.18 -3.55 5.63 -19.53 -0.11 -3.66 16 26 H 0.07 2.19 7.60 -2.39 -0.02 2.17 16 27 H 0.03 1.22 6.62 -2.39 -0.02 1.21 16 28 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.04 1.59 6.62 -2.39 -0.02 1.57 16 31 H 0.07 1.92 6.57 -2.39 -0.02 1.91 16 32 H 0.01 0.52 7.20 -2.38 -0.02 0.50 16 33 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 34 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 35 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.34 7.62 5.50 -89.69 -0.49 7.12 16 38 H 0.02 0.50 8.12 -2.39 -0.02 0.48 16 39 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.11 1.83 6.82 -2.39 -0.02 1.81 16 42 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 43 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 44 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 45 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -67.23 351.80 2.78 -64.45 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.42 Total: 16.26 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 4.18 Total: -39.68 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -2.64 Total: -79.11 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -1.06 Total: -8.72 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -67.23 2.78 -64.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288585756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.693 kcal (2) G-P(sol) polarization free energy of solvation -67.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds