Wall clock time and date at job start Tue Mar 31 2020 06:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46702 * 2 1 4 4 C 1.52992 * 109.47234 * 239.99932 * 2 1 3 5 5 C 1.50708 * 109.47166 * 59.99985 * 4 2 1 6 6 H 1.07993 * 119.99809 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99630 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00539 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99488 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47262 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47104 * 120.00110 * 9 7 5 12 12 H 1.48504 * 109.47376 * 239.99733 * 9 7 5 13 13 C 1.52998 * 109.47120 * 119.99554 * 2 1 3 14 14 N 1.46902 * 109.47208 * 300.00144 * 13 2 1 15 15 C 1.46898 * 110.99581 * 180.02562 * 14 13 2 16 16 C 1.53007 * 109.46928 * 180.02562 * 15 14 13 17 17 H 1.09001 * 110.82657 * 302.74536 * 16 15 14 18 18 C 1.54705 * 110.93908 * 66.45195 * 16 15 14 19 19 O 1.43771 * 102.78270 * 143.44488 * 18 16 15 20 20 C 1.36135 * 109.22847 * 332.20006 * 19 18 16 21 21 C 1.39284 * 129.89830 * 198.86445 * 20 19 18 22 22 C 1.37930 * 120.24021 * 180.63843 * 21 20 19 23 23 C 1.38281 * 120.35229 * 0.05756 * 22 21 20 24 24 C 1.38355 * 119.76789 * 359.78872 * 23 22 21 25 25 C 1.37746 * 119.97461 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47261 * 299.99765 * 1 2 3 27 27 H 1.08999 * 109.47197 * 60.00476 * 1 2 3 28 28 H 1.09002 * 109.46528 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47130 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46756 * 300.00218 * 3 2 1 31 31 H 1.08995 * 109.47374 * 59.99753 * 3 2 1 32 32 H 1.09001 * 109.47172 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47450 * 299.99542 * 4 2 1 34 34 H 0.96998 * 120.00025 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46754 * 180.02562 * 13 2 1 36 36 H 1.08993 * 109.47186 * 60.00626 * 13 2 1 37 37 H 1.00899 * 111.00411 * 303.95616 * 14 13 2 38 38 H 1.09002 * 109.47539 * 60.00582 * 15 14 13 39 39 H 1.09004 * 109.47628 * 299.99723 * 15 14 13 40 40 H 1.09000 * 110.74541 * 25.12891 * 18 16 15 41 41 H 1.08994 * 110.90880 * 261.84685 * 18 16 15 42 42 H 1.08000 * 119.87807 * 0.62084 * 21 20 19 43 43 H 1.08002 * 119.82181 * 180.02562 * 22 21 20 44 44 H 1.07995 * 120.11943 * 179.81621 * 23 22 21 45 45 H 1.07996 * 120.01269 * 179.70560 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6265 -1.5515 -3.8526 9 14 1.2472 0.3979 -5.2572 10 1 0.4218 1.5643 -4.8530 11 1 2.4019 0.8644 -6.0661 12 1 0.4220 -0.5357 -6.0651 13 6 2.0400 -0.7211 1.2493 14 7 1.5504 -0.0286 2.4487 15 6 2.0219 -0.6943 3.6703 16 6 1.4923 0.0535 4.8956 17 1 1.8024 1.0983 4.8758 18 6 -0.0472 -0.0645 4.9926 19 8 -0.2702 -0.1596 6.4097 20 6 0.8242 -0.7143 6.9996 21 6 0.9562 -1.3199 8.2469 22 6 2.1792 -1.8098 8.6552 23 6 3.2849 -1.7035 7.8316 24 6 3.1615 -1.1061 6.5898 25 6 1.9400 -0.6205 6.1780 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1300 1.4427 -0.0005 30 1 1.6765 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1301 -0.7208 -1.2494 33 1 1.6768 -1.7489 -1.2492 34 1 2.8603 -1.8833 -4.7336 35 1 3.1301 -0.7207 1.2494 36 1 1.6768 -1.7488 1.2493 37 1 1.8197 0.9438 2.4402 38 1 3.1118 -0.6937 3.6869 39 1 1.6589 -1.7220 3.6874 40 1 -0.3982 -0.9632 4.4854 41 1 -0.5318 0.8221 4.5840 42 1 0.0980 -1.4059 8.8968 43 1 2.2739 -2.2786 9.6236 44 1 4.2413 -2.0857 8.1563 45 1 4.0234 -1.0167 5.9453 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288585760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:44 Heat of formation + Delta-G solvation = -23.891222 kcal Electronic energy + Delta-G solvation = -22668.897310 eV Core-core repulsion = 19457.849922 eV Total energy + Delta-G solvation = -3211.047389 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33354 -37.81579 -37.51299 -35.18365 -32.76331 -31.76945 -30.24182 -29.39859 -27.06530 -26.36911 -26.01743 -24.34861 -23.28957 -22.40611 -21.93355 -20.78050 -17.93312 -17.58819 -16.68243 -16.29107 -16.20051 -15.71175 -15.38125 -14.80215 -14.33760 -14.17390 -14.04900 -13.56274 -13.49758 -13.18904 -12.90729 -12.70336 -12.46473 -12.05964 -11.97289 -11.79311 -11.73028 -11.32825 -10.99323 -10.97701 -10.93979 -10.85152 -10.76260 -10.52138 -10.28467 -10.12721 -9.70968 -9.13857 -9.03492 -8.83961 -8.33342 -8.32514 -8.19269 -5.97609 -3.97747 1.07121 1.17260 3.15412 3.31458 3.39484 3.42770 3.51552 4.05541 4.39159 4.46760 4.55320 4.75852 4.80551 4.87780 5.00718 5.18154 5.29837 5.36505 5.38415 5.41716 5.54998 5.61896 5.67224 5.76276 5.85351 5.90566 5.96542 6.10562 6.21177 6.22417 6.26442 6.29884 6.41013 6.47462 6.62691 6.75500 6.80591 7.02141 7.15463 7.18538 7.23765 7.33571 7.58697 7.69049 7.83526 8.02668 8.46826 9.07912 9.65261 11.14106 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.038363 B = 0.002711 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.700799 B =10327.335911 C =10700.708135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.070 3.930 14 N -0.688 5.688 15 C 0.071 3.929 16 C -0.074 4.074 17 H 0.094 0.906 18 C 0.067 3.933 19 O -0.310 6.310 20 C 0.110 3.890 21 C -0.144 4.144 22 C -0.087 4.087 23 C -0.152 4.152 24 C -0.067 4.067 25 C -0.166 4.166 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.012 0.988 33 H 0.015 0.985 34 H 0.258 0.742 35 H 0.024 0.976 36 H 0.066 0.934 37 H 0.339 0.661 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.546 1.520 23.148 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.186 4.186 4 C -0.005 4.005 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.058 4.058 14 N -0.319 5.319 15 C -0.059 4.059 16 C -0.092 4.092 17 H 0.112 0.888 18 C -0.007 4.007 19 O -0.224 6.224 20 C 0.065 3.935 21 C -0.162 4.162 22 C -0.105 4.105 23 C -0.170 4.170 24 C -0.085 4.085 25 C -0.168 4.168 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.158 0.842 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.128 0.872 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.296 1.163 23.089 23.155 hybrid contribution 0.871 0.593 -1.141 1.554 sum -0.425 1.756 21.948 22.022 Atomic orbital electron populations 1.21601 0.94975 1.00576 1.00176 1.20626 0.95869 0.94982 0.94354 1.21773 0.99690 0.96747 1.00434 1.19133 0.95898 0.95222 0.90211 1.21270 1.30664 1.11914 0.90582 0.92230 1.25022 0.95414 0.95125 0.99091 1.69974 1.37360 1.23222 1.23197 0.86609 0.78598 0.79741 0.83490 1.19770 1.21195 1.21149 1.22113 0.96413 0.98133 0.89142 1.60594 1.63690 1.06476 1.01177 1.21868 0.97216 0.98362 0.88454 1.21393 0.95509 1.00225 0.92100 0.88776 1.23868 0.94640 1.04160 0.78061 1.86830 1.37431 1.76269 1.21863 1.19617 0.86191 0.93415 0.94310 1.20264 0.98898 1.02055 0.95015 1.20859 0.91755 0.98336 0.99548 1.21029 0.99027 1.02538 0.94453 1.20353 0.95868 0.96344 0.95982 1.20770 0.94437 1.04198 0.97368 0.93914 0.92669 0.94182 0.94120 0.91679 0.94822 0.96930 0.96675 0.93211 0.95766 0.91515 0.84230 0.94889 0.90722 0.89820 0.87220 0.85587 0.85320 0.85585 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 8.06 37.16 0.30 -1.87 16 2 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 3 C -0.13 -2.31 7.89 37.16 0.29 -2.02 16 4 C 0.03 0.82 4.04 -27.88 -0.11 0.70 16 5 C -0.51 -13.69 7.65 -34.44 -0.26 -13.96 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.07 1.16 4.65 -3.82 -0.02 1.14 16 14 N -0.69 -9.10 5.53 -113.78 -0.63 -9.73 16 15 C 0.07 0.82 5.02 -3.82 -0.02 0.80 16 16 C -0.07 -0.78 3.31 -90.41 -0.30 -1.08 16 17 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 18 C 0.07 0.73 7.38 38.05 0.28 1.01 16 19 O -0.31 -3.88 11.10 -20.17 -0.22 -4.11 16 20 C 0.11 1.31 7.04 -38.96 -0.27 1.03 16 21 C -0.14 -1.44 10.06 -39.31 -0.40 -1.84 16 22 C -0.09 -0.74 10.02 -39.68 -0.40 -1.13 16 23 C -0.15 -1.32 10.07 -39.52 -0.40 -1.72 16 24 C -0.07 -0.67 9.93 -39.72 -0.39 -1.06 16 25 C -0.17 -1.86 5.69 -104.10 -0.59 -2.45 16 26 H 0.04 0.70 7.60 -51.93 -0.39 0.31 16 27 H 0.05 1.12 6.62 -51.93 -0.34 0.77 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 31 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.34 4.27 6.77 -39.29 -0.27 4.00 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 40 H 0.08 0.94 7.88 -51.93 -0.41 0.53 16 41 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 45 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 357.29 15.07 5.38 5.38 Total: -1.00 -29.78 357.29 -9.68 -39.46 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.45 Total: 0.75 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -2.48 Total: -22.23 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.11 Total: -35.73 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.22 Total: -4.11 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.78 -9.68 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288585760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.568 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds