Wall clock time and date at job start Tue Mar 31 2020 06:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46702 * 2 1 4 4 C 1.52992 * 109.47234 * 239.99932 * 2 1 3 5 5 C 1.50708 * 109.47166 * 59.99985 * 4 2 1 6 6 H 1.07993 * 119.99809 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99630 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00539 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99488 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47262 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47104 * 120.00110 * 9 7 5 12 12 H 1.48504 * 109.47376 * 239.99733 * 9 7 5 13 13 C 1.52998 * 109.47120 * 119.99554 * 2 1 3 14 14 N 1.46902 * 109.47208 * 300.00144 * 13 2 1 15 15 C 1.46898 * 110.99581 * 180.02562 * 14 13 2 16 16 C 1.53007 * 109.46928 * 180.02562 * 15 14 13 17 17 H 1.09001 * 110.82657 * 302.74536 * 16 15 14 18 18 C 1.54705 * 110.93908 * 66.45195 * 16 15 14 19 19 O 1.43771 * 102.78270 * 143.44488 * 18 16 15 20 20 C 1.36135 * 109.22847 * 332.20006 * 19 18 16 21 21 C 1.39284 * 129.89830 * 198.86445 * 20 19 18 22 22 C 1.37930 * 120.24021 * 180.63843 * 21 20 19 23 23 C 1.38281 * 120.35229 * 0.05756 * 22 21 20 24 24 C 1.38355 * 119.76789 * 359.78872 * 23 22 21 25 25 C 1.37746 * 119.97461 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47261 * 299.99765 * 1 2 3 27 27 H 1.08999 * 109.47197 * 60.00476 * 1 2 3 28 28 H 1.09002 * 109.46528 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47130 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46756 * 300.00218 * 3 2 1 31 31 H 1.08995 * 109.47374 * 59.99753 * 3 2 1 32 32 H 1.09001 * 109.47172 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47450 * 299.99542 * 4 2 1 34 34 H 0.96998 * 120.00025 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46754 * 180.02562 * 13 2 1 36 36 H 1.08993 * 109.47186 * 60.00626 * 13 2 1 37 37 H 1.00899 * 111.00411 * 303.95616 * 14 13 2 38 38 H 1.09002 * 109.47539 * 60.00582 * 15 14 13 39 39 H 1.09004 * 109.47628 * 299.99723 * 15 14 13 40 40 H 1.09000 * 110.74541 * 25.12891 * 18 16 15 41 41 H 1.08994 * 110.90880 * 261.84685 * 18 16 15 42 42 H 1.08000 * 119.87807 * 0.62084 * 21 20 19 43 43 H 1.08002 * 119.82181 * 180.02562 * 22 21 20 44 44 H 1.07995 * 120.11943 * 179.81621 * 23 22 21 45 45 H 1.07996 * 120.01269 * 179.70560 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6265 -1.5515 -3.8526 9 14 1.2472 0.3979 -5.2572 10 1 0.4218 1.5643 -4.8530 11 1 2.4019 0.8644 -6.0661 12 1 0.4220 -0.5357 -6.0651 13 6 2.0400 -0.7211 1.2493 14 7 1.5504 -0.0286 2.4487 15 6 2.0219 -0.6943 3.6703 16 6 1.4923 0.0535 4.8956 17 1 1.8024 1.0983 4.8758 18 6 -0.0472 -0.0645 4.9926 19 8 -0.2702 -0.1596 6.4097 20 6 0.8242 -0.7143 6.9996 21 6 0.9562 -1.3199 8.2469 22 6 2.1792 -1.8098 8.6552 23 6 3.2849 -1.7035 7.8316 24 6 3.1615 -1.1061 6.5898 25 6 1.9400 -0.6205 6.1780 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1300 1.4427 -0.0005 30 1 1.6765 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1301 -0.7208 -1.2494 33 1 1.6768 -1.7489 -1.2492 34 1 2.8603 -1.8833 -4.7336 35 1 3.1301 -0.7207 1.2494 36 1 1.6768 -1.7488 1.2493 37 1 1.8197 0.9438 2.4402 38 1 3.1118 -0.6937 3.6869 39 1 1.6589 -1.7220 3.6874 40 1 -0.3982 -0.9632 4.4854 41 1 -0.5318 0.8221 4.5840 42 1 0.0980 -1.4059 8.8968 43 1 2.2739 -2.2786 9.6236 44 1 4.2413 -2.0857 8.1563 45 1 4.0234 -1.0167 5.9453 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288585760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:44 Heat of formation + Delta-G solvation = -40.366173 kcal Electronic energy + Delta-G solvation = -22669.611718 eV Core-core repulsion = 19457.849922 eV Total energy + Delta-G solvation = -3211.761796 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.13198 -39.21971 -38.29298 -36.43095 -34.53077 -33.04122 -30.99570 -30.25806 -28.96555 -27.87405 -27.25989 -25.75110 -24.26347 -23.73886 -22.88330 -21.64052 -19.49245 -18.40386 -18.32030 -17.46554 -17.17940 -16.56775 -16.50825 -16.42808 -15.63716 -15.34122 -15.16626 -14.75207 -14.43311 -14.38031 -14.22485 -13.87798 -13.74341 -13.51802 -13.38221 -12.87143 -12.77847 -12.68711 -12.55816 -12.46795 -12.22941 -12.13899 -12.13114 -11.84964 -11.75589 -11.66688 -11.35996 -10.85387 -10.72716 -10.51085 -9.84407 -9.33851 -9.10136 -8.14142 -6.20846 0.34609 0.42921 1.39908 1.41272 1.53133 2.38030 2.43593 2.77566 3.09183 3.20075 3.60306 3.63638 3.89954 4.02785 4.17049 4.19603 4.22984 4.27089 4.40324 4.48097 4.55224 4.59673 4.61011 4.72412 4.79399 4.80266 4.84438 4.97028 5.03056 5.10015 5.12774 5.22987 5.24122 5.40554 5.48778 5.53408 5.55636 5.56991 5.60524 5.66474 5.71028 5.88550 5.93638 6.01983 6.25303 6.36984 6.51237 6.94894 7.46610 8.98444 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.038363 B = 0.002711 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.700799 B =10327.335911 C =10700.708135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.054 4.054 3 C -0.123 4.123 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.067 0.933 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.955 3.045 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.083 3.917 14 N -0.679 5.679 15 C 0.078 3.922 16 C -0.064 4.064 17 H 0.103 0.897 18 C 0.066 3.934 19 O -0.327 6.327 20 C 0.080 3.920 21 C -0.154 4.154 22 C -0.085 4.085 23 C -0.151 4.151 24 C -0.079 4.079 25 C -0.180 4.180 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.028 0.972 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.070 0.930 32 H -0.016 1.016 33 H -0.017 1.017 34 H 0.259 0.741 35 H 0.019 0.981 36 H 0.055 0.945 37 H 0.347 0.653 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.121 0.879 42 H 0.137 0.863 43 H 0.159 0.841 44 H 0.151 0.849 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.647 2.669 24.737 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.054 4.054 3 C -0.180 4.180 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.085 0.915 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.046 4.046 14 N -0.312 5.312 15 C -0.051 4.051 16 C -0.083 4.083 17 H 0.121 0.879 18 C -0.009 4.009 19 O -0.242 6.242 20 C 0.035 3.965 21 C -0.172 4.172 22 C -0.103 4.103 23 C -0.169 4.169 24 C -0.097 4.097 25 C -0.182 4.182 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.002 0.998 33 H 0.002 0.998 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.167 0.833 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.139 0.861 42 H 0.154 0.846 43 H 0.176 0.824 44 H 0.169 0.831 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.404 2.329 24.696 24.845 hybrid contribution 0.941 0.174 -1.535 1.809 sum -0.462 2.503 23.161 23.300 Atomic orbital electron populations 1.21512 0.94240 1.00054 1.00657 1.20481 0.96330 0.95616 0.93022 1.21692 0.99450 0.95541 1.01313 1.19028 0.93976 0.94102 0.92842 1.21655 1.30000 1.11869 0.91413 0.91539 1.25923 0.95772 0.95927 1.02605 1.70113 1.38990 1.24982 1.23944 0.85534 0.78115 0.78827 0.79417 1.18401 1.20847 1.20946 1.21794 0.95922 0.97478 0.89387 1.60484 1.63487 1.06736 1.00480 1.21799 0.97474 0.97895 0.87955 1.21288 0.95225 1.00417 0.91373 0.87942 1.23921 0.94968 1.04311 0.77668 1.86795 1.38150 1.76756 1.22454 1.19951 0.86275 0.94838 0.95397 1.20596 1.00118 1.01850 0.94683 1.21248 0.90955 0.97428 1.00654 1.21409 1.00229 1.01455 0.93838 1.20622 0.95789 0.96444 0.96861 1.20897 0.94881 1.04953 0.97454 0.91032 0.94389 0.95241 0.94489 0.93546 0.91113 0.99779 0.99850 0.93203 0.96277 0.92637 0.83308 0.94353 0.91618 0.90606 0.86054 0.84554 0.82380 0.83083 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.93 8.06 71.98 0.58 -3.35 16 2 C -0.05 -2.07 0.60 -52.18 -0.03 -2.10 16 3 C -0.12 -4.22 7.89 71.98 0.57 -3.66 16 4 C 0.04 1.95 4.04 29.85 0.12 2.07 16 5 C -0.51 -28.06 7.65 25.60 0.20 -27.87 16 6 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 7 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 8 N -0.94 -57.37 13.29 21.45 0.28 -57.08 16 9 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 10 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 C 0.08 2.71 4.65 86.30 0.40 3.11 16 14 N -0.68 -16.76 5.53 -513.88 -2.84 -19.61 16 15 C 0.08 1.70 5.02 86.31 0.43 2.14 16 16 C -0.06 -1.28 3.31 -10.66 -0.04 -1.31 16 17 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 18 C 0.07 1.37 7.38 72.56 0.54 1.90 16 19 O -0.33 -8.05 11.10 -95.09 -1.06 -9.10 16 20 C 0.08 1.85 7.04 22.68 0.16 2.01 16 21 C -0.15 -2.88 10.06 22.45 0.23 -2.66 16 22 C -0.09 -1.23 10.02 22.21 0.22 -1.01 16 23 C -0.15 -2.24 10.07 22.31 0.22 -2.02 16 24 C -0.08 -1.43 9.93 22.18 0.22 -1.21 16 25 C -0.18 -3.82 5.69 -19.53 -0.11 -3.93 16 26 H 0.07 2.20 7.60 -2.39 -0.02 2.18 16 27 H 0.04 1.50 6.62 -2.39 -0.02 1.48 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.76 6.62 -2.39 -0.02 1.75 16 31 H 0.07 1.90 6.57 -2.39 -0.02 1.89 16 32 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 33 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 34 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.35 7.74 6.77 -89.69 -0.61 7.13 16 38 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 1.57 8.09 -2.38 -0.02 1.55 16 40 H 0.08 1.67 7.88 -2.39 -0.02 1.65 16 41 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 45 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -65.45 357.29 2.94 -62.52 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.35 Total: 14.65 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 4.17 Total: -37.75 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -2.56 Total: -76.69 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -1.06 Total: -9.10 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -65.45 2.94 -62.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288585760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.150 kcal (2) G-P(sol) polarization free energy of solvation -65.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds