Wall clock time and date at job start Tue Mar 31 2020 06:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 H 1.08998 * 109.46828 * 305.00171 * 5 4 2 7 7 N 1.46498 * 109.46986 * 64.99835 * 5 4 2 8 8 C 1.34776 * 120.00504 * 275.00413 * 7 5 4 9 9 O 1.21286 * 119.99623 * 359.97438 * 8 7 5 10 10 C 1.50692 * 120.00329 * 180.02562 * 8 7 5 11 11 C 1.53005 * 109.47349 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47006 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00702 * 0.02562 * 12 11 10 14 14 C 1.37887 * 119.99883 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99705 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00023 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47294 * 60.00001 * 16 14 12 18 18 H 1.48500 * 109.46972 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47103 * 299.99879 * 16 14 12 20 20 C 1.50696 * 109.47265 * 184.99984 * 5 4 2 21 21 C 1.38230 * 120.00491 * 279.72718 * 20 5 4 22 22 C 1.38229 * 120.00321 * 179.78691 * 21 20 5 23 23 C 1.38236 * 120.00256 * 0.44617 * 22 21 20 24 24 C 1.38238 * 119.99343 * 359.80658 * 23 22 21 25 25 C 1.38234 * 120.00249 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 27 27 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 29 29 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 30 30 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 31 31 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 33 33 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 34 34 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 35 35 H 0.97004 * 119.99437 * 95.00257 * 7 5 4 36 36 H 1.09009 * 109.46979 * 299.99797 * 10 8 7 37 37 H 1.08996 * 109.47693 * 59.99621 * 10 8 7 38 38 H 1.08996 * 109.46802 * 299.99941 * 11 10 8 39 39 H 1.09004 * 109.46869 * 59.99563 * 11 10 8 40 40 H 0.97004 * 120.00172 * 180.02562 * 15 14 12 41 41 H 1.08002 * 119.99456 * 359.97438 * 21 20 5 42 42 H 1.08001 * 120.00373 * 180.27339 * 22 21 20 43 43 H 1.08001 * 120.00304 * 179.83533 * 23 22 21 44 44 H 1.08002 * 119.99745 * 180.02562 * 24 23 22 45 45 H 1.07999 * 119.99749 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8311 -1.1881 6 1 3.9954 0.1611 -1.0528 7 7 3.9479 -1.6872 -0.0628 8 6 4.0652 -1.1632 1.1734 9 8 3.8539 0.0174 1.3541 10 6 4.4598 -2.0438 2.3308 11 6 4.5208 -1.2073 3.6105 12 6 4.9149 -2.0881 4.7680 13 1 5.1034 -3.1393 4.6071 14 6 5.0357 -1.5518 6.0325 15 7 4.8066 -0.2717 6.2284 16 14 5.5249 -2.6434 7.4672 17 1 6.8581 -3.2413 7.2022 18 1 5.5839 -1.8315 8.7092 19 1 4.5208 -3.7253 7.6309 20 6 4.0772 -1.4302 -2.4724 21 6 4.0263 -2.7980 -2.6657 22 6 4.4923 -3.3472 -3.8455 23 6 5.0177 -2.5294 -4.8284 24 6 5.0734 -1.1621 -4.6330 25 6 4.6033 -0.6125 -3.4549 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9562 0.8901 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6053 -1.7198 -1.2953 34 1 1.7516 -0.1582 -2.1370 35 1 4.1172 -2.6314 -0.2074 36 1 3.7232 -2.8384 2.4505 37 1 5.4387 -2.4821 2.1367 38 1 5.2575 -0.4130 3.4906 39 1 3.5420 -0.7687 3.8048 40 1 4.8920 0.1058 7.1179 41 1 3.6197 -3.4373 -1.8960 42 1 4.4485 -4.4154 -3.9983 43 1 5.3843 -2.9587 -5.7492 44 1 5.4836 -0.5231 -5.4011 45 1 4.6464 0.4558 -3.3025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290893234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:33 Heat of formation + Delta-G solvation = -39.108179 kcal Electronic energy + Delta-G solvation = -23114.930956 eV Core-core repulsion = 19903.223711 eV Total energy + Delta-G solvation = -3211.707245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26126 -38.83614 -36.36012 -34.22842 -33.40940 -31.64653 -31.07561 -30.63524 -28.26318 -26.81940 -25.69717 -24.00850 -22.91198 -21.80647 -20.69069 -19.70331 -19.47327 -17.37772 -16.70470 -15.95647 -15.72923 -15.57541 -15.09791 -14.61175 -14.38865 -14.25198 -13.88381 -13.60613 -13.51695 -13.10371 -12.92296 -12.58906 -12.25077 -12.06189 -11.96760 -11.88683 -11.55244 -11.32675 -11.15896 -11.12072 -10.90123 -10.64249 -10.56877 -10.35553 -10.19469 -9.89433 -9.60033 -9.15908 -9.11451 -9.06682 -8.81110 -8.62761 -8.29816 -5.94415 -3.98539 1.13795 1.20513 3.29930 3.35385 3.39933 3.41344 3.49567 3.71689 4.46354 4.49077 4.68976 4.79422 4.91714 5.09187 5.14957 5.20802 5.29602 5.37822 5.40502 5.40695 5.63441 5.70688 5.76963 5.80061 5.86053 5.93269 6.01324 6.03987 6.17822 6.24998 6.25603 6.27090 6.28277 6.31361 6.40028 6.50745 6.74274 6.78243 6.83048 6.88348 6.93193 7.76133 7.89336 7.94009 8.09368 8.41378 8.85141 9.10094 9.64778 11.16381 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.003712 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.164883 B = 7541.028523 C = 8549.456735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.137 4.137 4 C -0.115 4.115 5 C 0.181 3.819 6 H 0.098 0.902 7 N -0.738 5.738 8 C 0.509 3.491 9 O -0.522 6.522 10 C -0.131 4.131 11 C 0.040 3.960 12 C -0.528 4.528 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.890 5.890 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.084 4.084 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.118 4.118 25 C -0.110 4.110 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.395 0.605 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.652 -3.784 -22.597 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.194 4.194 4 C -0.154 4.154 5 C 0.076 3.924 6 H 0.115 0.885 7 N -0.392 5.392 8 C 0.298 3.702 9 O -0.397 6.397 10 C -0.171 4.171 11 C 0.002 3.998 12 C -0.566 4.566 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.084 4.084 21 C -0.132 4.132 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.136 4.136 25 C -0.128 4.128 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.229 0.771 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.813 -2.757 -22.291 22.782 hybrid contribution 0.339 -1.115 0.671 1.344 sum -3.474 -3.872 -21.620 22.237 Atomic orbital electron populations 1.21850 0.96204 1.00973 1.01248 1.21179 0.94423 0.97383 0.98497 1.21821 1.02832 0.94957 0.99838 1.22039 0.93990 1.00718 0.98659 1.19886 0.94681 0.95322 0.82509 0.88465 1.46362 1.72776 1.12339 1.07738 1.21487 0.75560 0.89631 0.83555 1.90667 1.48263 1.16626 1.84105 1.21873 1.01380 0.99187 0.94672 1.18866 0.98387 0.94407 0.88113 1.21198 1.47218 0.95219 0.92979 0.92758 1.25013 0.95492 0.94946 0.98864 1.69983 1.48990 1.11569 1.22266 0.86671 0.79045 0.80470 0.81853 1.20272 1.21302 1.20275 1.20056 0.98519 0.93926 0.95912 1.20970 1.00098 0.94522 0.97622 1.21133 0.98768 0.99826 0.93809 1.21156 1.00046 0.93863 0.99226 1.21137 0.99830 0.95259 0.97373 1.21046 0.98269 0.99911 0.93582 0.93406 0.93335 0.92762 0.89783 0.93200 0.90745 0.94672 0.92023 0.91606 0.77078 0.90472 0.90444 0.95854 0.95824 0.92933 0.86013 0.86033 0.86222 0.86042 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.19 37.16 0.34 -1.50 16 2 C -0.10 -1.39 2.38 -90.62 -0.22 -1.61 16 3 C -0.14 -2.07 8.04 37.16 0.30 -1.78 16 4 C -0.12 -1.40 4.34 -26.73 -0.12 -1.52 16 5 C 0.18 2.28 2.37 -69.08 -0.16 2.12 16 6 H 0.10 1.40 5.79 -51.93 -0.30 1.10 16 7 N -0.74 -10.16 4.98 -54.94 -0.27 -10.44 16 8 C 0.51 9.30 6.38 -10.99 -0.07 9.23 16 9 O -0.52 -11.13 10.94 5.55 0.06 -11.07 16 10 C -0.13 -2.62 5.64 -27.88 -0.16 -2.78 16 11 C 0.04 1.06 4.26 -27.88 -0.12 0.94 16 12 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 13 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.08 -0.91 4.96 -104.63 -0.52 -1.43 16 21 C -0.11 -1.11 9.06 -39.59 -0.36 -1.47 16 22 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 23 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 24 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 25 C -0.11 -1.11 9.67 -39.58 -0.38 -1.50 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.48 5.19 -51.93 -0.27 1.21 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.25 4.76 -51.93 -0.25 1.00 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.39 4.51 6.85 -40.82 -0.28 4.23 16 36 H 0.08 1.42 8.14 -51.92 -0.42 1.00 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.12 1.04 6.90 -52.49 -0.36 0.68 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.12 1.13 8.04 -52.49 -0.42 0.71 16 LS Contribution 358.29 15.07 5.40 5.40 Total: -1.00 -32.34 358.29 -9.50 -41.84 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.34 Total: 3.51 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -3.07 Total: -19.31 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.46 Total: -37.09 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.06 Total: -11.07 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.34 -9.50 -41.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290893234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.734 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds