Wall clock time and date at job start Tue Mar 31 2020 06:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00167 * 179.74562 * 5 4 2 7 7 C 1.38233 * 119.99638 * 0.52647 * 6 5 4 8 8 C 1.50698 * 119.99937 * 179.77198 * 7 6 5 9 9 N 1.46507 * 109.46838 * 269.97709 * 8 7 6 10 10 C 1.46499 * 119.99880 * 90.00187 * 9 8 7 11 11 C 1.34776 * 119.99782 * 269.99649 * 9 8 7 12 12 O 1.21283 * 120.00122 * 0.02562 * 11 9 8 13 13 C 1.50700 * 119.99663 * 180.02562 * 11 9 8 14 14 C 1.53002 * 109.47198 * 180.02562 * 13 11 9 15 15 C 1.50699 * 109.47555 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99461 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00146 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00240 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00230 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46922 * 90.00242 * 19 17 15 21 21 H 1.48497 * 109.47284 * 210.00182 * 19 17 15 22 22 H 1.48497 * 109.46834 * 330.00714 * 19 17 15 23 23 C 1.38238 * 120.00258 * 359.74632 * 7 6 5 24 24 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 33 33 H 1.08001 * 120.00069 * 180.29825 * 6 5 4 34 34 H 1.09001 * 109.47385 * 29.97444 * 8 7 6 35 35 H 1.09000 * 109.47497 * 149.97580 * 8 7 6 36 36 H 1.09003 * 109.47171 * 89.99987 * 10 9 8 37 37 H 1.09000 * 109.46734 * 209.99716 * 10 9 8 38 38 H 1.09003 * 109.47165 * 329.99786 * 10 9 8 39 39 H 1.09006 * 109.47087 * 299.99646 * 13 11 9 40 40 H 1.08998 * 109.47599 * 60.00438 * 13 11 9 41 41 H 1.09001 * 109.46919 * 300.00299 * 14 13 11 42 42 H 1.09005 * 109.47051 * 59.99501 * 14 13 11 43 43 H 0.97000 * 120.00392 * 179.97438 * 18 17 15 44 44 H 1.08003 * 120.00252 * 180.02562 * 23 7 6 45 45 H 1.07991 * 120.00142 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1588 -0.8899 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 6 3.4563 -2.7238 -4.7184 9 7 2.4917 -3.7518 -5.1174 10 6 1.4112 -3.4201 -6.0493 11 6 2.5986 -5.0027 -4.6270 12 8 3.4929 -5.2772 -3.8552 13 6 1.6067 -6.0602 -5.0379 14 6 1.9507 -7.3795 -4.3435 15 6 0.9585 -8.4369 -4.7538 16 1 0.1620 -8.1923 -5.4408 17 6 1.0671 -9.7162 -4.2514 18 7 0.2015 -10.6392 -4.6098 19 14 2.4445 -10.1390 -3.0625 20 1 1.9880 -9.8977 -1.6701 21 1 2.8143 -11.5684 -3.2214 22 1 3.6260 -9.2870 -3.3507 23 6 3.2875 -2.4861 -2.2324 24 6 2.8271 -1.8343 -1.1037 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.0688 0.6339 -2.5850 33 1 1.8982 -0.5206 -4.5956 34 1 3.5773 -2.0050 -5.5288 35 1 4.4167 -3.1914 -4.5012 36 1 1.7461 -3.5965 -7.0715 37 1 0.5442 -4.0460 -5.8379 38 1 1.1394 -2.3710 -5.9320 39 1 0.6029 -5.7489 -4.7487 40 1 1.6477 -6.1967 -6.1185 41 1 2.9546 -7.6910 -4.6322 42 1 1.9095 -7.2428 -3.2628 43 1 0.2781 -11.5393 -4.2566 44 1 3.9088 -3.3640 -2.1333 45 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291014603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:48 Heat of formation + Delta-G solvation = -34.212505 kcal Electronic energy + Delta-G solvation = -22647.080577 eV Core-core repulsion = 19435.585623 eV Total energy + Delta-G solvation = -3211.494953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.07203 -39.10775 -36.16247 -34.85606 -33.50657 -31.58446 -30.98567 -30.55995 -27.39763 -27.26580 -26.58535 -24.95958 -22.93109 -22.29939 -20.88502 -20.00617 -18.65108 -17.15195 -16.69434 -16.17809 -15.86726 -15.57770 -15.22022 -14.86091 -14.13453 -14.02074 -13.89942 -13.75953 -13.39813 -13.27822 -13.05994 -12.61387 -12.55051 -12.43586 -12.34905 -12.16140 -12.07488 -11.87732 -11.37540 -11.36442 -11.26576 -10.95492 -10.86120 -10.75906 -10.11697 -10.00412 -9.76646 -9.27344 -9.15603 -8.91986 -8.62041 -8.49972 -8.44298 -6.01626 -4.00139 1.23909 1.40633 3.11755 3.25640 3.38934 3.45354 3.56468 3.84363 4.46029 4.52290 4.56411 4.79366 4.86567 4.94784 4.97140 5.09241 5.17414 5.23998 5.33941 5.35320 5.38710 5.39258 5.48087 5.55654 5.57645 5.68079 5.69765 5.75004 5.77304 5.96086 5.99421 6.00335 6.06419 6.10167 6.13359 6.39733 6.58926 6.60141 6.67252 6.72920 6.99082 7.38644 7.45789 7.63577 7.81233 8.51125 8.64867 9.01469 9.61622 11.11271 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018603 B = 0.003465 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.770534 B = 8078.164673 C = 8692.957578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.142 4.142 4 C -0.077 4.077 5 C -0.121 4.121 6 C -0.106 4.106 7 C -0.107 4.107 8 C 0.154 3.846 9 N -0.623 5.623 10 C 0.081 3.919 11 C 0.512 3.488 12 O -0.538 6.538 13 C -0.120 4.120 14 C 0.002 3.998 15 C -0.524 4.524 16 H 0.072 0.928 17 C 0.069 3.931 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.261 1.261 23 C -0.090 4.090 24 C -0.120 4.120 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.023 0.977 42 H 0.018 0.982 43 H 0.263 0.737 44 H 0.129 0.871 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.969 26.021 3.603 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.200 4.200 4 C -0.077 4.077 5 C -0.139 4.139 6 C -0.125 4.125 7 C -0.108 4.108 8 C 0.031 3.969 9 N -0.358 5.358 10 C -0.063 4.063 11 C 0.303 3.697 12 O -0.414 6.414 13 C -0.160 4.160 14 C -0.036 4.036 15 C -0.562 4.562 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.543 5.543 19 Si 0.704 3.296 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.185 1.185 23 C -0.109 4.109 24 C -0.138 4.138 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.041 0.959 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.147 0.853 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.405 25.661 4.018 26.196 hybrid contribution 0.470 -0.302 0.548 0.783 sum 3.875 25.359 4.566 26.057 Atomic orbital electron populations 1.21855 0.94306 1.02228 1.01749 1.20131 0.96003 0.95937 0.95543 1.21845 1.01180 0.95178 1.01773 1.19848 0.97545 0.95738 0.94604 1.20863 1.00786 1.00274 0.91951 1.20977 0.97619 0.95594 0.98317 1.20266 0.99128 0.95900 0.95492 1.20267 0.93198 0.89891 0.93511 1.48059 1.30512 1.09903 1.47303 1.21771 0.90447 1.01435 0.92613 1.21551 0.86180 0.82442 0.79552 1.90616 1.35300 1.80632 1.34804 1.21687 0.97142 0.94803 1.02345 1.19370 0.97525 0.90866 0.95824 1.21115 1.12976 0.93710 1.28370 0.90974 1.24968 0.95833 0.96277 0.96161 1.69912 1.36389 1.03166 1.44856 0.86798 0.83682 0.77370 0.81725 1.20262 1.21454 1.18521 1.21251 0.98914 0.98934 0.91780 1.21083 0.98493 0.95583 0.98686 0.92369 0.92481 0.92494 0.90557 0.92516 0.92497 0.92591 0.86434 0.86418 0.90219 0.89241 0.92652 0.90410 0.91699 0.89761 0.89684 0.95857 0.96361 0.92739 0.85310 0.86291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.00 37.16 0.33 -0.84 16 2 C -0.06 -0.50 3.09 -91.77 -0.28 -0.79 16 3 C -0.14 -1.04 9.01 37.16 0.33 -0.70 16 4 C -0.08 -0.84 4.78 -104.62 -0.50 -1.34 16 5 C -0.12 -1.25 8.71 -39.58 -0.34 -1.59 16 6 C -0.11 -1.15 9.70 -39.58 -0.38 -1.53 16 7 C -0.11 -1.35 5.46 -104.62 -0.57 -1.92 16 8 C 0.15 1.92 5.53 -5.19 -0.03 1.89 16 9 N -0.62 -8.88 2.86 -182.95 -0.52 -9.40 16 10 C 0.08 0.86 10.24 59.85 0.61 1.47 16 11 C 0.51 9.61 7.67 -10.99 -0.08 9.52 16 12 O -0.54 -11.82 15.09 5.56 0.08 -11.73 16 13 C -0.12 -2.40 4.19 -27.88 -0.12 -2.51 16 14 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 15 C -0.52 -15.15 9.66 -34.44 -0.33 -15.49 16 16 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 19 Si 0.88 22.82 27.47 -169.99 -4.67 18.15 16 20 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 23 C -0.09 -1.26 9.70 -39.58 -0.38 -1.64 16 24 C -0.12 -1.49 9.67 -39.58 -0.38 -1.87 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.44 7.37 -51.93 -0.38 0.06 16 28 H 0.08 0.65 7.88 -51.93 -0.41 0.24 16 29 H 0.06 0.39 7.41 -51.93 -0.38 0.01 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.12 0.99 7.10 -52.48 -0.37 0.61 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.08 0.76 8.02 -51.93 -0.42 0.34 16 35 H 0.09 1.24 7.37 -51.93 -0.38 0.86 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.86 6.44 -51.93 -0.33 0.53 16 38 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 39 H 0.08 1.58 7.40 -51.93 -0.38 1.20 16 40 H 0.08 1.57 8.11 -51.93 -0.42 1.15 16 41 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 42 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.13 1.99 7.58 -52.48 -0.40 1.59 16 45 H 0.12 1.32 7.95 -52.49 -0.42 0.90 16 LS Contribution 365.80 15.07 5.51 5.51 Total: -1.00 -33.88 365.80 -8.75 -42.63 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.61 Total: -2.27 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -2.32 Total: -15.42 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.25 Total: -36.88 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.67 Total: 18.15 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.88 -8.75 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291014603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.420 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds