Wall clock time and date at job start Tue Mar 31 2020 06:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00167 * 179.74562 * 5 4 2 7 7 C 1.38233 * 119.99638 * 0.52647 * 6 5 4 8 8 C 1.50698 * 119.99937 * 179.77198 * 7 6 5 9 9 N 1.46507 * 109.46838 * 269.97709 * 8 7 6 10 10 C 1.46499 * 119.99880 * 90.00187 * 9 8 7 11 11 C 1.34776 * 119.99782 * 269.99649 * 9 8 7 12 12 O 1.21283 * 120.00122 * 0.02562 * 11 9 8 13 13 C 1.50700 * 119.99663 * 180.02562 * 11 9 8 14 14 C 1.53002 * 109.47198 * 180.02562 * 13 11 9 15 15 C 1.50699 * 109.47555 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99461 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00146 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00240 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00230 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46922 * 90.00242 * 19 17 15 21 21 H 1.48497 * 109.47284 * 210.00182 * 19 17 15 22 22 H 1.48497 * 109.46834 * 330.00714 * 19 17 15 23 23 C 1.38238 * 120.00258 * 359.74632 * 7 6 5 24 24 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 33 33 H 1.08001 * 120.00069 * 180.29825 * 6 5 4 34 34 H 1.09001 * 109.47385 * 29.97444 * 8 7 6 35 35 H 1.09000 * 109.47497 * 149.97580 * 8 7 6 36 36 H 1.09003 * 109.47171 * 89.99987 * 10 9 8 37 37 H 1.09000 * 109.46734 * 209.99716 * 10 9 8 38 38 H 1.09003 * 109.47165 * 329.99786 * 10 9 8 39 39 H 1.09006 * 109.47087 * 299.99646 * 13 11 9 40 40 H 1.08998 * 109.47599 * 60.00438 * 13 11 9 41 41 H 1.09001 * 109.46919 * 300.00299 * 14 13 11 42 42 H 1.09005 * 109.47051 * 59.99501 * 14 13 11 43 43 H 0.97000 * 120.00392 * 179.97438 * 18 17 15 44 44 H 1.08003 * 120.00252 * 180.02562 * 23 7 6 45 45 H 1.07991 * 120.00142 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1588 -0.8899 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 6 3.4563 -2.7238 -4.7184 9 7 2.4917 -3.7518 -5.1174 10 6 1.4112 -3.4201 -6.0493 11 6 2.5986 -5.0027 -4.6270 12 8 3.4929 -5.2772 -3.8552 13 6 1.6067 -6.0602 -5.0379 14 6 1.9507 -7.3795 -4.3435 15 6 0.9585 -8.4369 -4.7538 16 1 0.1620 -8.1923 -5.4408 17 6 1.0671 -9.7162 -4.2514 18 7 0.2015 -10.6392 -4.6098 19 14 2.4445 -10.1390 -3.0625 20 1 1.9880 -9.8977 -1.6701 21 1 2.8143 -11.5684 -3.2214 22 1 3.6260 -9.2870 -3.3507 23 6 3.2875 -2.4861 -2.2324 24 6 2.8271 -1.8343 -1.1037 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.0688 0.6339 -2.5850 33 1 1.8982 -0.5206 -4.5956 34 1 3.5773 -2.0050 -5.5288 35 1 4.4167 -3.1914 -4.5012 36 1 1.7461 -3.5965 -7.0715 37 1 0.5442 -4.0460 -5.8379 38 1 1.1394 -2.3710 -5.9320 39 1 0.6029 -5.7489 -4.7487 40 1 1.6477 -6.1967 -6.1185 41 1 2.9546 -7.6910 -4.6322 42 1 1.9095 -7.2428 -3.2628 43 1 0.2781 -11.5393 -4.2566 44 1 3.9088 -3.3640 -2.1333 45 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291014603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:48 Heat of formation + Delta-G solvation = -52.880147 kcal Electronic energy + Delta-G solvation = -22647.890066 eV Core-core repulsion = 19435.585623 eV Total energy + Delta-G solvation = -3212.304443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.18210 -40.22984 -37.17563 -35.86577 -35.57688 -33.42361 -31.92708 -31.64875 -28.54217 -27.97892 -27.91231 -26.29950 -23.86825 -23.39998 -22.51615 -20.82994 -20.07257 -19.10195 -17.74401 -17.56909 -17.04369 -16.66769 -16.30875 -16.13216 -15.91948 -15.04291 -14.89523 -14.77866 -14.51996 -14.38270 -14.31613 -14.18606 -13.74807 -13.45928 -13.30964 -13.20727 -13.00508 -12.91905 -12.82660 -12.79128 -12.15889 -12.03000 -11.99266 -11.98567 -11.77938 -11.63281 -11.50188 -11.40933 -10.79981 -10.75138 -9.81794 -9.69244 -9.44926 -8.33404 -6.36094 0.33946 0.50484 1.30774 1.32537 1.47988 1.68185 2.13640 2.33069 2.91098 3.02137 3.70007 3.72714 3.87406 3.97285 4.08324 4.16958 4.31849 4.32061 4.33343 4.41005 4.45537 4.52417 4.54656 4.66060 4.73344 4.81386 4.81978 4.89764 4.96145 4.99253 5.04617 5.08299 5.15998 5.20561 5.30877 5.32861 5.39007 5.41951 5.53034 5.58440 5.60048 5.71103 5.74609 6.11694 6.21653 6.39387 6.69833 7.24680 7.29292 8.82317 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018603 B = 0.003465 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.770534 B = 8078.164673 C = 8692.957578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.139 4.139 4 C -0.078 4.078 5 C -0.120 4.120 6 C -0.100 4.100 7 C -0.119 4.119 8 C 0.154 3.846 9 N -0.611 5.611 10 C 0.071 3.929 11 C 0.510 3.490 12 O -0.581 6.581 13 C -0.113 4.113 14 C 0.007 3.993 15 C -0.528 4.528 16 H 0.051 0.949 17 C 0.015 3.985 18 N -0.943 5.943 19 Si 0.937 3.063 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.116 4.116 24 C -0.138 4.138 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.009 0.991 42 H 0.004 0.996 43 H 0.268 0.732 44 H 0.099 0.901 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 29.055 3.125 29.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 C -0.196 4.196 4 C -0.078 4.078 5 C -0.138 4.138 6 C -0.118 4.118 7 C -0.120 4.120 8 C 0.032 3.968 9 N -0.344 5.344 10 C -0.071 4.071 11 C 0.300 3.700 12 O -0.461 6.461 13 C -0.153 4.153 14 C -0.031 4.031 15 C -0.566 4.566 16 H 0.069 0.931 17 C -0.183 4.183 18 N -0.583 5.583 19 Si 0.761 3.239 20 H -0.195 1.195 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.135 4.135 24 C -0.156 4.156 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.138 0.862 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.027 0.973 42 H 0.022 0.978 43 H 0.077 0.923 44 H 0.117 0.883 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.903 28.738 3.513 29.097 hybrid contribution 0.551 -1.159 0.663 1.444 sum 3.455 27.580 4.176 28.107 Atomic orbital electron populations 1.21844 0.93627 1.01547 1.02901 1.20182 0.96471 0.96667 0.94383 1.21817 1.00813 0.94092 1.02850 1.20139 0.96575 0.94977 0.96106 1.21221 1.00399 1.00766 0.91415 1.21294 0.96195 0.94333 1.00024 1.20299 1.00124 0.96954 0.94634 1.20421 0.91661 0.89759 0.94961 1.48024 1.31228 1.08591 1.46527 1.22089 0.89060 1.03331 0.92586 1.21237 0.85403 0.83862 0.79545 1.90605 1.36892 1.81703 1.36916 1.21494 0.98200 0.92909 1.02651 1.19203 0.95673 0.92787 0.95390 1.21415 1.12940 0.94736 1.27534 0.93093 1.25776 0.98128 0.96417 0.97947 1.70015 1.38171 1.03777 1.46349 0.85854 0.80670 0.77561 0.79779 1.19495 1.20107 1.18735 1.21189 1.00012 0.98848 0.93449 1.21201 0.99447 0.96573 0.98356 0.93938 0.91051 0.91662 0.90949 0.91699 0.91177 0.93167 0.83758 0.83189 0.86193 0.91533 0.90704 0.90911 0.88500 0.88574 0.88119 0.97259 0.97755 0.92327 0.88327 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.00 71.98 0.65 -1.35 16 2 C -0.06 -0.92 3.09 -11.54 -0.04 -0.95 16 3 C -0.14 -1.67 9.01 71.98 0.65 -1.02 16 4 C -0.08 -1.58 4.78 -19.87 -0.09 -1.67 16 5 C -0.12 -2.11 8.71 22.27 0.19 -1.92 16 6 C -0.10 -1.82 9.70 22.27 0.22 -1.60 16 7 C -0.12 -2.86 5.46 -19.87 -0.11 -2.97 16 8 C 0.15 3.59 5.53 85.63 0.47 4.07 16 9 N -0.61 -16.35 2.86 -851.11 -2.43 -18.79 16 10 C 0.07 1.27 10.24 127.77 1.31 2.58 16 11 C 0.51 19.06 7.67 87.66 0.67 19.74 16 12 O -0.58 -26.39 15.09 -3.04 -0.05 -26.43 16 13 C -0.11 -4.48 4.19 29.85 0.13 -4.35 16 14 C 0.01 0.38 3.33 29.85 0.10 0.48 16 15 C -0.53 -31.10 9.66 25.60 0.25 -30.85 16 16 H 0.05 3.14 7.99 -2.91 -0.02 3.11 16 17 C 0.02 0.91 5.47 84.65 0.46 1.37 16 18 N -0.94 -59.67 13.96 21.45 0.30 -59.37 16 19 Si 0.94 47.74 27.47 68.60 1.88 49.63 16 20 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 22 H -0.26 -13.40 6.54 99.48 0.65 -12.75 16 23 C -0.12 -3.36 9.70 22.27 0.22 -3.14 16 24 C -0.14 -3.48 9.67 22.27 0.22 -3.26 16 25 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.80 7.37 -2.39 -0.02 0.78 16 28 H 0.07 1.17 7.88 -2.39 -0.02 1.15 16 29 H 0.06 0.68 7.41 -2.39 -0.02 0.66 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.14 1.76 7.10 -2.91 -0.02 1.74 16 33 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 34 H 0.12 1.82 8.02 -2.39 -0.02 1.80 16 35 H 0.07 1.87 7.37 -2.39 -0.02 1.86 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.41 6.44 -2.39 -0.02 1.39 16 38 H 0.10 1.15 8.07 -2.39 -0.02 1.13 16 39 H 0.10 3.55 7.40 -2.38 -0.02 3.53 16 40 H 0.10 3.63 8.11 -2.39 -0.02 3.61 16 41 H 0.01 0.49 7.16 -2.39 -0.02 0.47 16 42 H 0.00 0.22 7.53 -2.38 -0.02 0.20 16 43 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 44 H 0.10 3.37 7.58 -2.91 -0.02 3.34 16 45 H 0.12 2.82 7.95 -2.92 -0.02 2.80 16 Total: -1.00 -75.55 365.80 5.88 -69.67 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.89 Total: 10.14 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 5.29 Total: -24.86 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -2.13 Total: -78.16 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.05 Total: -26.43 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.88 Total: 49.63 kcal Total: -75.55 5.88 -69.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291014603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.793 kcal (2) G-P(sol) polarization free energy of solvation -75.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds