Wall clock time and date at job start Tue Mar 31 2020 06:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46920 * 2 1 4 4 C 1.53005 * 109.47052 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47232 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47130 * 305.00174 * 5 4 3 7 7 C 1.52997 * 109.47019 * 184.99797 * 5 4 3 8 8 N 1.46503 * 109.47135 * 64.99595 * 5 4 3 9 9 C 1.46502 * 119.99828 * 60.00262 * 8 5 4 10 10 C 1.34778 * 120.00175 * 240.00074 * 8 5 4 11 11 O 1.21589 * 120.00045 * 354.78418 * 10 8 5 12 12 C 1.47639 * 119.99790 * 174.78758 * 10 8 5 13 13 C 1.40009 * 119.89788 * 328.56882 * 12 10 8 14 14 C 1.36319 * 120.10775 * 179.75205 * 13 12 10 15 15 C 1.40881 * 119.89267 * 0.24733 * 14 13 12 16 16 C 1.41107 * 120.10757 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00314 * 209.38301 * 16 15 14 18 18 C 1.40227 * 119.99656 * 29.37923 * 16 15 14 19 19 N 1.30646 * 120.00007 * 10.81884 * 18 16 15 20 20 Si 1.86800 * 119.99869 * 190.82572 * 18 16 15 21 21 H 1.48499 * 109.47736 * 59.99878 * 20 18 16 22 22 H 1.48504 * 109.47121 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47029 * 299.99702 * 20 18 16 24 24 C 1.40888 * 119.79338 * 0.02562 * 15 14 13 25 25 C 1.36322 * 119.89080 * 359.97438 * 24 15 14 26 26 H 1.08997 * 109.47221 * 59.99695 * 1 2 3 27 27 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99574 * 1 2 3 29 29 H 1.09004 * 109.46434 * 240.00426 * 2 1 3 30 30 H 1.08997 * 109.47221 * 120.00305 * 2 1 3 31 31 H 1.08999 * 109.46917 * 60.00241 * 3 2 1 32 32 H 1.08997 * 109.47423 * 300.00182 * 3 2 1 33 33 H 1.09000 * 109.46934 * 59.99809 * 4 3 2 34 34 H 1.09007 * 109.46909 * 300.00108 * 4 3 2 35 35 H 1.08997 * 109.47353 * 60.00047 * 7 5 4 36 36 H 1.09000 * 109.46896 * 179.97438 * 7 5 4 37 37 H 1.08998 * 109.47143 * 299.99741 * 7 5 4 38 38 H 1.09003 * 109.47147 * 272.27100 * 9 8 5 39 39 H 1.09004 * 109.47226 * 32.27468 * 9 8 5 40 40 H 1.09003 * 109.47167 * 152.27019 * 9 8 5 41 41 H 1.08002 * 119.94736 * 0.02562 * 13 12 10 42 42 H 1.08000 * 120.05310 * 180.27634 * 14 13 12 43 43 H 0.97003 * 119.99604 * 180.02562 * 19 18 16 44 44 H 1.08002 * 120.05506 * 180.02562 * 24 15 14 45 45 H 1.08004 * 119.94319 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8850 0.0000 6 1 3.6451 3.4246 -0.8413 7 6 5.6048 2.8869 -0.1263 8 7 3.6929 3.5393 1.2523 9 6 4.1549 3.0000 2.5338 10 6 2.9118 4.6373 1.2256 11 8 2.6065 5.1405 0.1616 12 6 2.4270 5.2292 2.4883 13 6 2.1795 4.4074 3.5945 14 6 1.7366 4.9500 4.7640 15 6 1.5229 6.3394 4.8568 16 6 1.0650 6.9060 6.0653 17 1 0.4663 7.8046 6.0478 18 6 1.3874 6.3021 7.2891 19 7 2.2779 5.3470 7.3318 20 14 0.5436 6.8631 8.8584 21 1 -0.9219 6.6589 8.7327 22 1 1.0564 6.0723 10.0061 23 1 0.8251 8.3035 9.0840 24 6 1.7679 7.1616 3.7392 25 6 2.2107 6.6099 2.5740 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9330 0.9288 -0.8908 34 1 3.9338 0.9285 0.8892 35 1 5.8928 2.4001 -1.0581 36 1 5.9681 3.9146 -0.1263 37 1 6.0397 2.3474 0.7150 38 1 3.4531 2.2429 2.8836 39 1 5.1397 2.5508 2.4051 40 1 4.2158 3.8051 3.2661 41 1 2.3440 3.3424 3.5225 42 1 1.5502 4.3159 5.6181 43 1 2.5006 4.9290 8.1783 44 1 1.6059 8.2273 3.8059 45 1 2.3991 7.2394 1.7168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291099120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:49 Heat of formation + Delta-G solvation = -37.552266 kcal Electronic energy + Delta-G solvation = -23278.484815 eV Core-core repulsion = 20066.845039 eV Total energy + Delta-G solvation = -3211.639776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.67653 -37.42788 -36.37045 -34.67845 -33.84336 -32.11223 -29.82716 -29.47818 -28.80715 -26.55636 -25.86799 -24.10657 -22.26052 -21.04177 -20.90938 -20.25638 -18.65605 -17.46831 -16.61730 -15.95338 -15.55990 -15.16806 -14.80198 -14.25688 -14.04706 -13.74251 -13.51935 -13.18425 -13.09998 -12.72782 -12.49876 -12.36343 -12.33386 -12.16421 -11.92075 -11.79327 -11.61295 -11.33715 -11.22739 -11.17158 -11.04806 -10.96510 -10.63368 -10.58347 -10.47098 -10.44590 -9.99939 -9.46531 -9.35351 -8.89727 -8.15056 -7.65191 -7.45511 -6.93032 -4.57762 2.30750 2.96560 2.97101 3.00342 3.03426 3.56894 3.76961 3.82979 4.56487 4.67476 4.97990 5.07059 5.19488 5.32558 5.35025 5.48582 5.51459 5.54655 5.69873 5.72080 5.73922 5.81665 5.85268 5.88325 5.95168 6.01070 6.16360 6.18530 6.20465 6.25209 6.29957 6.31960 6.41846 6.49627 6.80775 6.87963 6.99939 7.13019 7.17582 7.48502 7.63748 7.83588 7.89393 8.09473 8.13608 8.44822 8.68354 8.78501 9.02857 9.98931 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018409 B = 0.003950 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.614973 B = 7087.484020 C = 7616.068617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.119 4.119 4 C -0.126 4.126 5 C 0.135 3.865 6 H 0.097 0.903 7 C -0.160 4.160 8 N -0.615 5.615 9 C 0.080 3.920 10 C 0.575 3.425 11 O -0.571 6.571 12 C -0.274 4.274 13 C -0.074 4.074 14 C -0.172 4.172 15 C 0.129 3.871 16 C -0.450 4.450 17 H 0.082 0.918 18 C 0.074 3.926 19 N -0.785 5.785 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.276 1.276 23 H -0.263 1.263 24 C -0.233 4.233 25 C -0.030 4.030 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.285 0.715 44 H 0.097 0.903 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 -9.601 -6.413 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.156 4.156 4 C -0.164 4.164 5 C 0.031 3.969 6 H 0.115 0.885 7 C -0.218 4.218 8 N -0.348 5.348 9 C -0.063 4.063 10 C 0.370 3.630 11 O -0.452 6.452 12 C -0.278 4.278 13 C -0.093 4.093 14 C -0.191 4.191 15 C 0.125 3.875 16 C -0.479 4.479 17 H 0.100 0.900 18 C -0.146 4.146 19 N -0.409 5.409 20 Si 0.738 3.262 21 H -0.186 1.186 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.253 4.253 25 C -0.050 4.050 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.139 0.861 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.066 -9.501 -6.790 12.074 hybrid contribution -0.195 0.126 0.907 0.936 sum 2.871 -9.376 -5.883 11.435 Atomic orbital electron populations 1.21777 0.96034 1.01151 1.02104 1.21514 0.95839 0.97105 1.01425 1.21570 0.95039 0.96233 1.02772 1.21948 0.96179 0.96332 1.01964 1.20975 0.94378 0.92989 0.88560 0.88527 1.22122 0.95785 1.02282 1.01599 1.47719 1.51758 1.29215 1.06118 1.22043 0.98207 0.99973 0.86073 1.18727 0.76291 0.78279 0.89655 1.90624 1.59797 1.62015 1.32812 1.18906 1.20432 0.94649 0.93837 1.20911 0.97911 0.97726 0.92706 1.21027 1.06130 0.95326 0.96640 1.17785 0.86240 0.91600 0.91827 1.19756 1.28140 1.09667 0.90292 0.90026 1.26021 0.93426 0.93639 1.01470 1.69699 1.23205 1.19154 1.28861 0.86253 0.80572 0.79838 0.79487 1.18645 1.20134 1.18795 1.20754 1.11449 0.98148 0.94944 1.20306 0.95381 0.93052 0.96225 0.92851 0.93107 0.92535 0.92483 0.92293 0.91564 0.92132 0.91464 0.91808 0.92000 0.92315 0.92438 0.93131 0.92527 0.89274 0.87988 0.86105 0.90431 0.88460 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.28 16 2 C -0.12 -1.31 5.93 -26.73 -0.16 -1.47 16 3 C -0.12 -1.54 5.10 -26.73 -0.14 -1.68 16 4 C -0.13 -1.48 4.64 -26.73 -0.12 -1.61 16 5 C 0.13 1.91 2.64 -67.93 -0.18 1.73 16 6 H 0.10 1.58 6.91 -51.93 -0.36 1.22 16 7 C -0.16 -1.89 9.17 37.16 0.34 -1.55 16 8 N -0.61 -10.38 2.21 -175.12 -0.39 -10.77 16 9 C 0.08 1.20 7.75 59.85 0.46 1.66 16 10 C 0.58 12.22 7.40 -12.42 -0.09 12.13 16 11 O -0.57 -13.58 16.06 5.29 0.08 -13.50 16 12 C -0.27 -6.23 5.31 -104.73 -0.56 -6.78 16 13 C -0.07 -1.62 7.51 -39.61 -0.30 -1.92 16 14 C -0.17 -4.19 8.59 -39.27 -0.34 -4.53 16 15 C 0.13 3.28 5.55 -106.81 -0.59 2.68 16 16 C -0.45 -11.29 9.05 -37.75 -0.34 -11.63 16 17 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 18 C 0.07 1.73 5.25 -17.31 -0.09 1.64 16 19 N -0.78 -18.82 10.87 55.56 0.60 -18.22 16 20 Si 0.91 17.54 29.57 -169.99 -5.03 12.51 16 21 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 22 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 24 C -0.23 -5.66 9.73 -39.27 -0.38 -6.04 16 25 C -0.03 -0.72 9.53 -39.61 -0.38 -1.09 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.03 7.75 -51.93 -0.40 0.63 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.72 7.51 -51.93 -0.39 0.33 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.62 6.67 -51.93 -0.35 0.28 16 38 H 0.05 0.71 6.84 -51.93 -0.36 0.36 16 39 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 40 H 0.09 1.54 5.75 -51.93 -0.30 1.24 16 41 H 0.10 1.97 5.00 -52.49 -0.26 1.71 16 42 H 0.12 3.00 6.25 -52.49 -0.33 2.67 16 43 H 0.28 6.19 8.29 -40.82 -0.34 5.86 16 44 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 45 H 0.10 2.17 7.93 -52.48 -0.42 1.76 16 LS Contribution 357.65 15.07 5.39 5.39 Total: -1.00 -27.51 357.65 -9.10 -36.60 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -7.27 Total: 7.72 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -2.49 Total: -19.74 kcal Atomic # 7 Polarization: -29.21 SS G_CDS: 0.22 Total: -28.99 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.08 Total: -13.50 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.51 -9.10 -36.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291099120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.950 kcal (2) G-P(sol) polarization free energy of solvation -27.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds