Wall clock time and date at job start Tue Mar 31 2020 06:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46920 * 2 1 4 4 C 1.53005 * 109.47052 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47232 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47130 * 305.00174 * 5 4 3 7 7 C 1.52997 * 109.47019 * 184.99797 * 5 4 3 8 8 N 1.46503 * 109.47135 * 64.99595 * 5 4 3 9 9 C 1.46502 * 119.99828 * 60.00262 * 8 5 4 10 10 C 1.34778 * 120.00175 * 240.00074 * 8 5 4 11 11 O 1.21589 * 120.00045 * 354.78418 * 10 8 5 12 12 C 1.47639 * 119.99790 * 174.78758 * 10 8 5 13 13 C 1.40009 * 119.89788 * 328.56882 * 12 10 8 14 14 C 1.36319 * 120.10775 * 179.75205 * 13 12 10 15 15 C 1.40881 * 119.89267 * 0.24733 * 14 13 12 16 16 C 1.41107 * 120.10757 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00314 * 209.38301 * 16 15 14 18 18 C 1.40227 * 119.99656 * 29.37923 * 16 15 14 19 19 N 1.30646 * 120.00007 * 10.81884 * 18 16 15 20 20 Si 1.86800 * 119.99869 * 190.82572 * 18 16 15 21 21 H 1.48499 * 109.47736 * 59.99878 * 20 18 16 22 22 H 1.48504 * 109.47121 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47029 * 299.99702 * 20 18 16 24 24 C 1.40888 * 119.79338 * 0.02562 * 15 14 13 25 25 C 1.36322 * 119.89080 * 359.97438 * 24 15 14 26 26 H 1.08997 * 109.47221 * 59.99695 * 1 2 3 27 27 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99574 * 1 2 3 29 29 H 1.09004 * 109.46434 * 240.00426 * 2 1 3 30 30 H 1.08997 * 109.47221 * 120.00305 * 2 1 3 31 31 H 1.08999 * 109.46917 * 60.00241 * 3 2 1 32 32 H 1.08997 * 109.47423 * 300.00182 * 3 2 1 33 33 H 1.09000 * 109.46934 * 59.99809 * 4 3 2 34 34 H 1.09007 * 109.46909 * 300.00108 * 4 3 2 35 35 H 1.08997 * 109.47353 * 60.00047 * 7 5 4 36 36 H 1.09000 * 109.46896 * 179.97438 * 7 5 4 37 37 H 1.08998 * 109.47143 * 299.99741 * 7 5 4 38 38 H 1.09003 * 109.47147 * 272.27100 * 9 8 5 39 39 H 1.09004 * 109.47226 * 32.27468 * 9 8 5 40 40 H 1.09003 * 109.47167 * 152.27019 * 9 8 5 41 41 H 1.08002 * 119.94736 * 0.02562 * 13 12 10 42 42 H 1.08000 * 120.05310 * 180.27634 * 14 13 12 43 43 H 0.97003 * 119.99604 * 180.02562 * 19 18 16 44 44 H 1.08002 * 120.05506 * 180.02562 * 24 15 14 45 45 H 1.08004 * 119.94319 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8850 0.0000 6 1 3.6451 3.4246 -0.8413 7 6 5.6048 2.8869 -0.1263 8 7 3.6929 3.5393 1.2523 9 6 4.1549 3.0000 2.5338 10 6 2.9118 4.6373 1.2256 11 8 2.6065 5.1405 0.1616 12 6 2.4270 5.2292 2.4883 13 6 2.1795 4.4074 3.5945 14 6 1.7366 4.9500 4.7640 15 6 1.5229 6.3394 4.8568 16 6 1.0650 6.9060 6.0653 17 1 0.4663 7.8046 6.0478 18 6 1.3874 6.3021 7.2891 19 7 2.2779 5.3470 7.3318 20 14 0.5436 6.8631 8.8584 21 1 -0.9219 6.6589 8.7327 22 1 1.0564 6.0723 10.0061 23 1 0.8251 8.3035 9.0840 24 6 1.7679 7.1616 3.7392 25 6 2.2107 6.6099 2.5740 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9330 0.9288 -0.8908 34 1 3.9338 0.9285 0.8892 35 1 5.8928 2.4001 -1.0581 36 1 5.9681 3.9146 -0.1263 37 1 6.0397 2.3474 0.7150 38 1 3.4531 2.2429 2.8836 39 1 5.1397 2.5508 2.4051 40 1 4.2158 3.8051 3.2661 41 1 2.3440 3.3424 3.5225 42 1 1.5502 4.3159 5.6181 43 1 2.5006 4.9290 8.1783 44 1 1.6059 8.2273 3.8059 45 1 2.3991 7.2394 1.7168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291099120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:48 Heat of formation + Delta-G solvation = -49.440579 kcal Electronic energy + Delta-G solvation = -23279.000331 eV Core-core repulsion = 20066.845039 eV Total energy + Delta-G solvation = -3212.155292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.22573 -39.11925 -37.80174 -35.89604 -35.56980 -33.42108 -31.50499 -31.32790 -29.78487 -27.96881 -27.57539 -25.13913 -23.84532 -22.80050 -21.98022 -21.68431 -20.08620 -19.31136 -18.13465 -17.53062 -17.08943 -16.49565 -16.04125 -15.86323 -15.37053 -15.14464 -14.78895 -14.58785 -14.52371 -14.30590 -13.82265 -13.75481 -13.64025 -13.37782 -13.27301 -13.21946 -12.91506 -12.84148 -12.79962 -12.59042 -12.30418 -12.19551 -11.98512 -11.76491 -11.66479 -11.46847 -11.43819 -11.25750 -11.12504 -10.60291 -9.57951 -9.51011 -9.30248 -8.70398 -6.47314 0.50973 1.13697 1.40196 1.45292 1.51834 2.06201 2.18595 2.22273 2.77493 3.65246 3.66376 4.01669 4.05907 4.07977 4.19008 4.32559 4.35511 4.40685 4.43387 4.47803 4.57769 4.69208 4.75259 4.80921 4.91422 4.91979 4.94842 4.97701 5.04553 5.05805 5.11606 5.16903 5.20665 5.26153 5.31129 5.35379 5.40958 5.49965 5.61503 5.73810 5.85724 5.98995 6.02009 6.25153 6.53788 6.57386 6.81221 6.90566 7.39029 8.24217 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018409 B = 0.003950 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.614973 B = 7087.484020 C = 7616.068617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.118 4.118 4 C -0.117 4.117 5 C 0.128 3.872 6 H 0.070 0.930 7 C -0.153 4.153 8 N -0.604 5.604 9 C 0.077 3.923 10 C 0.571 3.429 11 O -0.605 6.605 12 C -0.281 4.281 13 C -0.060 4.060 14 C -0.190 4.190 15 C 0.102 3.898 16 C -0.484 4.484 17 H 0.081 0.919 18 C 0.038 3.962 19 N -0.808 5.808 20 Si 0.986 3.014 21 H -0.260 1.260 22 H -0.263 1.263 23 H -0.261 1.261 24 C -0.248 4.248 25 C -0.042 4.042 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.040 0.960 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.130 0.870 42 H 0.114 0.886 43 H 0.294 0.706 44 H 0.102 0.898 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 -11.953 -6.068 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.156 4.156 4 C -0.155 4.155 5 C 0.025 3.975 6 H 0.088 0.912 7 C -0.211 4.211 8 N -0.335 5.335 9 C -0.065 4.065 10 C 0.365 3.635 11 O -0.489 6.489 12 C -0.285 4.285 13 C -0.078 4.078 14 C -0.209 4.209 15 C 0.099 3.901 16 C -0.512 4.512 17 H 0.099 0.901 18 C -0.179 4.179 19 N -0.433 5.433 20 Si 0.807 3.193 21 H -0.184 1.184 22 H -0.187 1.187 23 H -0.185 1.185 24 C -0.267 4.267 25 C -0.061 4.061 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.147 0.853 42 H 0.132 0.868 43 H 0.105 0.895 44 H 0.121 0.879 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.129 -11.892 -6.454 14.146 hybrid contribution -0.458 0.804 0.702 1.161 sum 3.671 -11.088 -5.752 13.020 Atomic orbital electron populations 1.21801 0.96371 1.01980 1.01161 1.21482 0.95565 0.95539 1.02702 1.21541 0.96235 0.97350 1.00441 1.21914 0.94923 0.94583 1.04031 1.21238 0.96221 0.93904 0.86114 0.91194 1.22079 0.93358 1.01834 1.03793 1.47739 1.49924 1.27735 1.08126 1.22141 1.00500 0.99410 0.84484 1.18544 0.76987 0.79494 0.88443 1.90601 1.61357 1.63457 1.33503 1.19202 1.19897 0.94567 0.94871 1.21096 0.96183 0.98976 0.91574 1.21034 1.07579 0.95000 0.97279 1.18120 0.87033 0.92422 0.92520 1.20015 1.29344 1.10526 0.91293 0.90101 1.26822 0.93560 0.93451 1.04112 1.69727 1.23596 1.19645 1.30297 0.85176 0.79271 0.79452 0.75433 1.18443 1.18750 1.18513 1.20881 1.12117 0.98532 0.95166 1.20461 0.95602 0.93902 0.96142 0.93268 0.91370 0.94084 0.90633 0.91419 0.94659 0.93824 0.88675 0.90258 0.89340 0.94077 0.90720 0.91757 0.88919 0.91670 0.85269 0.86833 0.89453 0.87938 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 9.91 71.98 0.71 -2.44 16 2 C -0.12 -2.22 5.93 30.60 0.18 -2.04 16 3 C -0.12 -2.92 5.10 30.60 0.16 -2.76 16 4 C -0.12 -2.39 4.64 30.59 0.14 -2.25 16 5 C 0.13 3.41 2.64 44.99 0.12 3.53 16 6 H 0.07 2.27 6.91 -2.39 -0.02 2.26 16 7 C -0.15 -3.15 9.17 71.98 0.66 -2.49 16 8 N -0.60 -19.81 2.21 -826.20 -1.83 -21.64 16 9 C 0.08 2.13 7.75 127.77 0.99 3.12 16 10 C 0.57 24.61 7.40 86.73 0.64 25.25 16 11 O -0.60 -29.58 16.06 -3.99 -0.06 -29.64 16 12 C -0.28 -13.06 5.31 -19.94 -0.11 -13.17 16 13 C -0.06 -2.66 7.51 22.25 0.17 -2.50 16 14 C -0.19 -9.47 8.59 22.47 0.19 -9.27 16 15 C 0.10 5.38 5.55 -21.28 -0.12 5.26 16 16 C -0.48 -24.91 9.05 23.46 0.21 -24.70 16 17 H 0.08 4.01 7.87 -2.91 -0.02 3.99 16 18 C 0.04 1.79 5.25 85.35 0.45 2.23 16 19 N -0.81 -38.88 10.87 21.87 0.24 -38.64 16 20 Si 0.99 35.57 29.57 68.60 2.03 37.60 16 21 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 22 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 23 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 24 C -0.25 -12.50 9.73 22.47 0.22 -12.28 16 25 C -0.04 -2.05 9.53 22.25 0.21 -1.84 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.03 1.08 7.75 -2.39 -0.02 1.06 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.43 7.51 -2.38 -0.02 1.41 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.29 6.67 -2.39 -0.02 1.28 16 38 H 0.06 1.64 6.84 -2.39 -0.02 1.62 16 39 H 0.09 1.94 6.43 -2.38 -0.02 1.92 16 40 H 0.06 2.17 5.75 -2.39 -0.01 2.16 16 41 H 0.13 4.91 5.00 -2.91 -0.01 4.90 16 42 H 0.11 5.77 6.25 -2.91 -0.02 5.75 16 43 H 0.29 12.66 8.29 -92.71 -0.77 11.89 16 44 H 0.10 4.89 8.06 -2.91 -0.02 4.86 16 45 H 0.10 4.66 7.93 -2.91 -0.02 4.63 16 Total: -1.00 -61.94 357.65 6.16 -55.77 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.96 Total: 32.89 kcal Atomic # 6 Polarization: -41.17 SS G_CDS: 4.83 Total: -36.33 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -1.59 Total: -60.29 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.06 Total: -29.64 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Total: -61.94 6.16 -55.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291099120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.332 kcal (2) G-P(sol) polarization free energy of solvation -61.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds