Wall clock time and date at job start Tue Mar 31 2020 06:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47137 * 2 1 4 4 C 1.52998 * 109.46655 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47086 * 180.02562 * 4 3 2 6 6 C 1.38277 * 119.92734 * 269.72375 * 5 4 3 7 7 C 1.38115 * 120.07383 * 180.27110 * 6 5 4 8 8 C 1.38874 * 119.92284 * 0.02562 * 7 6 5 9 9 N 1.39929 * 120.06712 * 179.97438 * 8 7 6 10 10 C 1.46503 * 119.99926 * 112.85832 * 9 8 7 11 11 C 1.34775 * 119.99722 * 292.85281 * 9 8 7 12 12 O 1.21281 * 120.00109 * 5.28368 * 11 9 8 13 13 C 1.50703 * 119.99360 * 185.27787 * 11 9 8 14 14 C 1.53003 * 109.46699 * 180.02562 * 13 11 9 15 15 C 1.50703 * 109.47037 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99897 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99891 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00201 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99903 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46967 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46892 * 120.00159 * 19 17 15 22 22 H 1.48495 * 109.46834 * 240.00511 * 19 17 15 23 23 C 1.38879 * 119.86330 * 0.02562 * 8 7 6 24 24 C 1.38113 * 119.92389 * 359.97438 * 23 8 7 25 25 H 1.09005 * 109.47585 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46894 * 300.00298 * 1 2 3 27 27 H 1.09003 * 109.47156 * 59.99972 * 1 2 3 28 28 H 1.08999 * 109.46894 * 239.99702 * 2 1 3 29 29 H 1.08998 * 109.46723 * 119.99880 * 2 1 3 30 30 H 1.09000 * 109.46963 * 60.00184 * 3 2 1 31 31 H 1.08998 * 109.47216 * 299.99578 * 3 2 1 32 32 H 1.08999 * 109.47262 * 59.99772 * 4 3 2 33 33 H 1.09003 * 109.47271 * 299.99803 * 4 3 2 34 34 H 1.08000 * 119.96551 * 0.27777 * 6 5 4 35 35 H 1.07994 * 120.04205 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47163 * 89.99923 * 10 9 8 37 37 H 1.08994 * 109.46695 * 209.99817 * 10 9 8 38 38 H 1.09003 * 109.47124 * 329.99816 * 10 9 8 39 39 H 1.09000 * 109.47145 * 299.99810 * 13 11 9 40 40 H 1.08994 * 109.47483 * 60.00637 * 13 11 9 41 41 H 1.09008 * 109.47043 * 299.99514 * 14 13 11 42 42 H 1.08997 * 109.47782 * 60.00074 * 14 13 11 43 43 H 0.97004 * 120.00210 * 179.97438 * 18 17 15 44 44 H 1.07994 * 120.03249 * 179.97438 * 23 8 7 45 45 H 1.08005 * 119.95906 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0725 2.8632 0.0000 6 6 4.3074 3.5124 -1.1981 7 6 4.7732 4.8126 -1.2010 8 6 5.0061 5.4677 0.0011 9 7 5.4786 6.7848 0.0017 10 6 4.6246 7.8692 0.4929 11 6 6.7193 7.0559 -0.4496 12 8 7.3904 6.1752 -0.9445 13 6 7.2725 8.4533 -0.3393 14 6 8.6871 8.4891 -0.9212 15 6 9.2407 9.8864 -0.8104 16 1 8.6431 10.6705 -0.3695 17 6 10.5100 10.1637 -1.2720 18 7 11.2374 9.2090 -1.8094 19 14 11.1959 11.8959 -1.1353 20 1 10.1863 12.7791 -0.4982 21 1 12.4286 11.8762 -0.3075 22 1 11.5180 12.4090 -2.4910 23 6 4.7702 4.8126 1.2027 24 6 4.3044 3.5124 1.1987 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9329 0.9286 -0.8908 33 1 3.9337 0.9284 0.8891 34 1 4.1264 3.0022 -2.1326 35 1 4.9562 5.3192 -2.1370 36 1 4.7870 8.0035 1.5623 37 1 4.8723 8.7923 -0.0310 38 1 3.5792 7.6184 0.3128 39 1 6.6345 9.1415 -0.8938 40 1 7.3029 8.7504 0.7089 41 1 9.3255 7.8008 -0.3671 42 1 8.6565 8.1922 -1.9695 43 1 12.1303 9.4041 -2.1344 44 1 4.9508 5.3193 2.1391 45 1 4.1211 3.0022 2.1328 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291292178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:58 Heat of formation + Delta-G solvation = -38.717784 kcal Electronic energy + Delta-G solvation = -21968.671033 eV Core-core repulsion = 18756.980717 eV Total energy + Delta-G solvation = -3211.690317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.27568 -38.64631 -36.21371 -34.99546 -33.51441 -32.04524 -30.95286 -30.84250 -28.45413 -26.56627 -25.79834 -24.08694 -22.70272 -22.12716 -21.36294 -20.64447 -18.84543 -17.16410 -16.71093 -16.17736 -15.62697 -15.51049 -15.47109 -14.53211 -14.47019 -14.33648 -14.19834 -13.48383 -13.34124 -13.18193 -13.00614 -12.91852 -12.59300 -12.29694 -12.20648 -12.15047 -11.81864 -11.62242 -11.41431 -11.14791 -11.10515 -10.95104 -10.89846 -10.79465 -10.58342 -9.97002 -9.65425 -9.24529 -9.08662 -8.97981 -8.89852 -8.33460 -8.14456 -5.96563 -4.01143 1.27782 1.43247 3.14429 3.21987 3.32297 3.39488 3.42723 3.71922 4.46666 4.47574 4.60358 4.77429 4.84075 4.95317 5.02370 5.10152 5.13876 5.36889 5.38415 5.38988 5.40797 5.41641 5.45357 5.49833 5.52063 5.65852 5.69543 5.72604 5.74717 5.83303 5.94867 6.05541 6.06277 6.18733 6.20142 6.29698 6.56225 6.59573 6.71594 6.84161 7.21451 7.62684 7.73983 7.84655 8.06141 8.37194 8.69808 9.07316 9.62471 11.14410 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.045552 B = 0.002425 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.541000 B =11542.849349 C =11839.372930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.079 4.079 5 C -0.091 4.091 6 C -0.108 4.108 7 C -0.102 4.102 8 C 0.147 3.853 9 N -0.593 5.593 10 C 0.084 3.916 11 C 0.512 3.488 12 O -0.518 6.518 13 C -0.125 4.125 14 C 0.036 3.964 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.121 4.121 24 C -0.110 4.110 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.260 0.740 44 H 0.122 0.878 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.189 -13.853 5.817 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.151 4.151 4 C -0.116 4.116 5 C -0.091 4.091 6 C -0.126 4.126 7 C -0.122 4.122 8 C 0.057 3.943 9 N -0.325 5.325 10 C -0.058 4.058 11 C 0.303 3.697 12 O -0.391 6.391 13 C -0.165 4.165 14 C -0.002 4.002 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.141 4.141 24 C -0.128 4.128 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.140 0.860 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.610 -14.316 5.456 26.490 hybrid contribution 0.460 1.051 0.103 1.152 sum -21.150 -13.265 5.558 25.577 Atomic orbital electron populations 1.21778 0.95944 1.01483 1.01849 1.21558 0.95824 0.96935 1.02034 1.21609 0.94472 0.96600 1.02456 1.20597 0.95473 0.92680 1.02867 1.19840 0.99952 0.96165 0.93125 1.20881 0.99857 0.94305 0.97597 1.21273 0.97983 0.95249 0.97708 1.17653 0.98030 0.85617 0.93040 1.45773 1.15701 1.05178 1.65864 1.21806 0.94223 0.90110 0.99664 1.21791 0.79266 0.92698 0.75986 1.90692 1.57765 1.48770 1.41911 1.21906 1.01752 0.89961 1.02901 1.18931 0.87441 0.96949 0.96860 1.21242 1.00036 0.94962 1.40233 0.92505 1.25034 0.97072 0.97049 0.95276 1.70009 1.10391 1.32057 1.40313 0.86528 0.78998 0.84680 0.77711 1.19735 1.21018 1.21013 1.21208 1.00756 0.94845 0.97304 1.20823 1.00254 0.94259 0.97514 0.92880 0.92774 0.92753 0.92004 0.92038 0.91853 0.91818 0.91046 0.91102 0.85990 0.85950 0.92550 0.89989 0.91436 0.90058 0.90026 0.95804 0.95797 0.92988 0.85960 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.13 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.11 -0.83 5.20 -26.73 -0.14 -0.97 16 4 C -0.08 -0.66 5.34 -27.88 -0.15 -0.81 16 5 C -0.09 -1.01 5.14 -104.59 -0.54 -1.55 16 6 C -0.11 -1.34 9.69 -39.61 -0.38 -1.72 16 7 C -0.10 -1.53 9.31 -39.39 -0.37 -1.89 16 8 C 0.15 2.26 4.83 -83.69 -0.40 1.85 16 9 N -0.59 -9.43 2.93 -120.82 -0.35 -9.78 16 10 C 0.08 0.96 10.10 59.85 0.60 1.56 16 11 C 0.51 10.40 7.55 -10.98 -0.08 10.32 16 12 O -0.52 -12.77 15.54 5.56 0.09 -12.68 16 13 C -0.13 -2.59 4.32 -27.88 -0.12 -2.71 16 14 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 15 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.58 13.29 55.43 0.74 -26.84 16 19 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C -0.12 -1.60 9.85 -39.39 -0.39 -1.99 16 24 C -0.11 -1.25 9.69 -39.61 -0.38 -1.64 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 33 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.89 6.48 -51.93 -0.34 0.55 16 38 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 39 H 0.08 1.51 7.24 -51.93 -0.38 1.13 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 42 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 45 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -34.29 374.00 -9.43 -43.72 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -7.85 Total: -2.86 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -2.67 Total: -13.88 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.38 Total: -36.63 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.29 -9.43 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291292178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.006 kcal (2) G-P(sol) polarization free energy of solvation -34.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds