Wall clock time and date at job start Tue Mar 31 2020 06:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47137 * 2 1 4 4 C 1.52998 * 109.46655 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47086 * 180.02562 * 4 3 2 6 6 C 1.38277 * 119.92734 * 269.72375 * 5 4 3 7 7 C 1.38115 * 120.07383 * 180.27110 * 6 5 4 8 8 C 1.38874 * 119.92284 * 0.02562 * 7 6 5 9 9 N 1.39929 * 120.06712 * 179.97438 * 8 7 6 10 10 C 1.46503 * 119.99926 * 112.85832 * 9 8 7 11 11 C 1.34775 * 119.99722 * 292.85281 * 9 8 7 12 12 O 1.21281 * 120.00109 * 5.28368 * 11 9 8 13 13 C 1.50703 * 119.99360 * 185.27787 * 11 9 8 14 14 C 1.53003 * 109.46699 * 180.02562 * 13 11 9 15 15 C 1.50703 * 109.47037 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99897 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99891 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00201 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99903 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46967 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46892 * 120.00159 * 19 17 15 22 22 H 1.48495 * 109.46834 * 240.00511 * 19 17 15 23 23 C 1.38879 * 119.86330 * 0.02562 * 8 7 6 24 24 C 1.38113 * 119.92389 * 359.97438 * 23 8 7 25 25 H 1.09005 * 109.47585 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46894 * 300.00298 * 1 2 3 27 27 H 1.09003 * 109.47156 * 59.99972 * 1 2 3 28 28 H 1.08999 * 109.46894 * 239.99702 * 2 1 3 29 29 H 1.08998 * 109.46723 * 119.99880 * 2 1 3 30 30 H 1.09000 * 109.46963 * 60.00184 * 3 2 1 31 31 H 1.08998 * 109.47216 * 299.99578 * 3 2 1 32 32 H 1.08999 * 109.47262 * 59.99772 * 4 3 2 33 33 H 1.09003 * 109.47271 * 299.99803 * 4 3 2 34 34 H 1.08000 * 119.96551 * 0.27777 * 6 5 4 35 35 H 1.07994 * 120.04205 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47163 * 89.99923 * 10 9 8 37 37 H 1.08994 * 109.46695 * 209.99817 * 10 9 8 38 38 H 1.09003 * 109.47124 * 329.99816 * 10 9 8 39 39 H 1.09000 * 109.47145 * 299.99810 * 13 11 9 40 40 H 1.08994 * 109.47483 * 60.00637 * 13 11 9 41 41 H 1.09008 * 109.47043 * 299.99514 * 14 13 11 42 42 H 1.08997 * 109.47782 * 60.00074 * 14 13 11 43 43 H 0.97004 * 120.00210 * 179.97438 * 18 17 15 44 44 H 1.07994 * 120.03249 * 179.97438 * 23 8 7 45 45 H 1.08005 * 119.95906 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0725 2.8632 0.0000 6 6 4.3074 3.5124 -1.1981 7 6 4.7732 4.8126 -1.2010 8 6 5.0061 5.4677 0.0011 9 7 5.4786 6.7848 0.0017 10 6 4.6246 7.8692 0.4929 11 6 6.7193 7.0559 -0.4496 12 8 7.3904 6.1752 -0.9445 13 6 7.2725 8.4533 -0.3393 14 6 8.6871 8.4891 -0.9212 15 6 9.2407 9.8864 -0.8104 16 1 8.6431 10.6705 -0.3695 17 6 10.5100 10.1637 -1.2720 18 7 11.2374 9.2090 -1.8094 19 14 11.1959 11.8959 -1.1353 20 1 10.1863 12.7791 -0.4982 21 1 12.4286 11.8762 -0.3075 22 1 11.5180 12.4090 -2.4910 23 6 4.7702 4.8126 1.2027 24 6 4.3044 3.5124 1.1987 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9329 0.9286 -0.8908 33 1 3.9337 0.9284 0.8891 34 1 4.1264 3.0022 -2.1326 35 1 4.9562 5.3192 -2.1370 36 1 4.7870 8.0035 1.5623 37 1 4.8723 8.7923 -0.0310 38 1 3.5792 7.6184 0.3128 39 1 6.6345 9.1415 -0.8938 40 1 7.3029 8.7504 0.7089 41 1 9.3255 7.8008 -0.3671 42 1 8.6565 8.1922 -1.9695 43 1 12.1303 9.4041 -2.1344 44 1 4.9508 5.3193 2.1391 45 1 4.1211 3.0022 2.1328 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291292178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:57 Heat of formation + Delta-G solvation = -57.146180 kcal Electronic energy + Delta-G solvation = -21969.470148 eV Core-core repulsion = 18756.980717 eV Total energy + Delta-G solvation = -3212.489432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.55009 -39.85131 -37.19588 -35.99585 -35.60960 -33.31228 -32.39686 -31.94433 -29.37139 -27.97960 -27.28788 -25.16241 -23.70195 -23.63727 -22.13984 -21.69566 -20.26537 -18.88006 -18.20215 -17.38679 -17.17675 -16.53716 -16.42435 -16.35917 -15.68979 -15.37016 -14.92307 -14.65671 -14.48033 -14.41193 -14.21817 -13.82850 -13.71009 -13.65768 -13.50328 -13.30440 -13.05483 -12.85434 -12.62873 -12.43754 -12.34453 -11.98828 -11.95670 -11.88871 -11.63215 -11.56487 -11.36055 -11.30465 -10.82348 -10.59283 -10.17635 -9.91357 -9.25652 -8.19192 -6.33644 0.24997 0.42509 1.41832 1.43527 1.56849 1.58429 1.96877 2.42406 2.72280 3.13892 3.78678 3.81505 3.88672 4.02866 4.14592 4.21010 4.22323 4.37305 4.41585 4.44066 4.44948 4.47447 4.60983 4.67343 4.71734 4.84331 4.86332 4.87535 4.96709 5.01109 5.03313 5.10770 5.19563 5.33095 5.34503 5.40547 5.47119 5.50452 5.53403 5.59099 5.68045 5.68631 5.82815 6.10389 6.15290 6.25903 6.84745 7.19589 7.36810 8.93841 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.045552 B = 0.002425 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.541000 B =11542.849349 C =11839.372930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.076 4.076 5 C -0.085 4.085 6 C -0.114 4.114 7 C -0.126 4.126 8 C 0.115 3.885 9 N -0.580 5.580 10 C 0.074 3.926 11 C 0.509 3.491 12 O -0.578 6.578 13 C -0.112 4.112 14 C 0.042 3.958 15 C -0.541 4.541 16 H 0.079 0.921 17 C -0.009 4.009 18 N -0.939 5.939 19 Si 0.976 3.024 20 H -0.251 1.251 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.125 4.125 24 C -0.107 4.107 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.106 0.894 41 H -0.020 1.020 42 H -0.019 1.019 43 H 0.263 0.737 44 H 0.136 0.864 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.266 -13.272 7.712 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.146 4.146 4 C -0.113 4.113 5 C -0.085 4.085 6 C -0.132 4.132 7 C -0.145 4.145 8 C 0.025 3.975 9 N -0.310 5.310 10 C -0.066 4.066 11 C 0.301 3.699 12 O -0.456 6.456 13 C -0.151 4.151 14 C 0.004 3.996 15 C -0.579 4.579 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.800 3.200 20 H -0.174 1.174 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.144 4.144 24 C -0.126 4.126 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.155 0.845 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.125 0.875 41 H -0.001 1.001 42 H 0.000 1.000 43 H 0.071 0.929 44 H 0.154 0.846 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -23.767 -13.719 7.385 28.419 hybrid contribution 1.016 0.755 -0.480 1.354 sum -22.751 -12.964 6.905 27.081 Atomic orbital electron populations 1.21784 0.95663 1.01885 1.01808 1.21542 0.96061 0.96171 1.02400 1.21555 0.93499 0.97324 1.02240 1.20649 0.96173 0.90751 1.03756 1.20203 0.98405 0.97371 0.92505 1.21109 0.99469 0.93479 0.99145 1.21295 0.99663 0.96532 0.97054 1.17914 0.99865 0.85669 0.94102 1.45650 1.14443 1.06825 1.64067 1.22158 0.94637 0.88904 1.00914 1.21660 0.80516 0.91881 0.75859 1.90662 1.59877 1.50088 1.44952 1.21660 0.98097 0.91228 1.04129 1.18709 0.91000 0.95767 0.94081 1.21728 1.00575 0.95669 1.39921 0.90330 1.26177 0.97618 1.02185 0.94635 1.70192 1.10955 1.35093 1.41621 0.85237 0.78404 0.78522 0.77848 1.17403 1.20666 1.20655 1.21392 1.00575 0.95607 0.96856 1.21202 0.98907 0.93589 0.98870 0.92294 0.92653 0.92989 0.91890 0.91447 0.91728 0.92421 0.90633 0.89799 0.84458 0.87952 0.90355 0.89287 0.89241 0.87430 0.87546 1.00135 1.00048 0.92858 0.84595 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.12 -1.28 5.93 30.60 0.18 -1.10 16 3 C -0.11 -1.34 5.20 30.59 0.16 -1.18 16 4 C -0.08 -1.09 5.34 29.85 0.16 -0.93 16 5 C -0.08 -1.75 5.14 -19.84 -0.10 -1.85 16 6 C -0.11 -2.80 9.69 22.25 0.22 -2.58 16 7 C -0.13 -3.88 9.31 22.39 0.21 -3.67 16 8 C 0.11 3.52 4.83 38.15 0.18 3.70 16 9 N -0.58 -18.30 2.93 -654.55 -1.92 -20.22 16 10 C 0.07 1.53 10.10 127.77 1.29 2.82 16 11 C 0.51 21.35 7.55 87.66 0.66 22.01 16 12 O -0.58 -30.33 15.54 -3.03 -0.05 -30.38 16 13 C -0.11 -4.63 4.32 29.85 0.13 -4.50 16 14 C 0.04 2.40 4.26 29.85 0.13 2.52 16 15 C -0.54 -31.06 9.11 25.60 0.23 -30.82 16 16 H 0.08 4.07 7.74 -2.91 -0.02 4.05 16 17 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 18 N -0.94 -60.31 13.29 21.45 0.28 -60.03 16 19 Si 0.98 44.55 29.54 68.60 2.03 46.57 16 20 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 C -0.12 -3.12 9.85 22.39 0.22 -2.90 16 24 C -0.11 -2.21 9.69 22.25 0.22 -1.99 16 25 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 26 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 33 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 34 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.10 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.71 6.48 -2.39 -0.02 1.70 16 38 H 0.09 1.48 8.05 -2.39 -0.02 1.46 16 39 H 0.11 3.87 7.24 -2.39 -0.02 3.85 16 40 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 41 H -0.02 -1.28 8.10 -2.38 -0.02 -1.30 16 42 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 43 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 44 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 45 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -78.99 374.00 6.34 -72.65 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.93 Total: 12.72 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 5.06 Total: -21.32 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -1.63 Total: -80.25 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.05 Total: -30.38 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -78.99 6.34 -72.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291292178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.501 kcal (2) G-P(sol) polarization free energy of solvation -78.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds