Wall clock time and date at job start Tue Mar 31 2020 06:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47205 * 2 1 4 4 C 1.53007 * 109.47050 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46909 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47539 * 55.00076 * 5 4 3 7 7 C 1.53000 * 109.46924 * 174.99971 * 5 4 3 8 8 N 1.46505 * 109.47605 * 295.00133 * 5 4 3 9 9 C 1.46502 * 119.99364 * 300.00304 * 8 5 4 10 10 C 1.34766 * 120.00136 * 119.99942 * 8 5 4 11 11 O 1.21551 * 120.00379 * 355.49536 * 10 8 5 12 12 C 1.47893 * 120.00011 * 175.49596 * 10 8 5 13 13 C 1.39917 * 120.02273 * 221.43049 * 12 10 8 14 14 C 1.38335 * 120.35267 * 179.71206 * 13 12 10 15 15 C 1.37751 * 120.41178 * 0.56538 * 14 13 12 16 16 C 1.40749 * 120.04076 * 359.71865 * 15 14 13 17 17 C 1.41432 * 120.17841 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00191 * 209.05052 * 17 16 15 19 19 C 1.39944 * 119.99989 * 29.05132 * 17 16 15 20 20 N 1.30824 * 120.00116 * 10.67879 * 19 17 16 21 21 Si 1.86802 * 119.99981 * 190.67464 * 19 17 16 22 22 H 1.48501 * 109.46781 * 60.00392 * 21 19 17 23 23 H 1.48503 * 109.47108 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47383 * 300.00336 * 21 19 17 25 25 C 1.38993 * 120.02420 * 41.70593 * 12 10 8 26 26 H 1.08997 * 109.46995 * 300.00813 * 1 2 3 27 27 H 1.09004 * 109.46589 * 60.00774 * 1 2 3 28 28 H 1.08999 * 109.46777 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47468 * 239.99362 * 2 1 3 30 30 H 1.09004 * 109.46676 * 119.99773 * 2 1 3 31 31 H 1.09004 * 109.47118 * 299.99502 * 3 2 1 32 32 H 1.09000 * 109.47429 * 59.99338 * 3 2 1 33 33 H 1.08994 * 109.46993 * 299.99395 * 4 3 2 34 34 H 1.09004 * 109.47040 * 60.00027 * 4 3 2 35 35 H 1.08995 * 109.47006 * 300.00183 * 7 5 4 36 36 H 1.08999 * 109.47461 * 60.00197 * 7 5 4 37 37 H 1.09004 * 109.47091 * 180.02562 * 7 5 4 38 38 H 1.08998 * 109.46826 * 95.23905 * 9 8 5 39 39 H 1.09005 * 109.46612 * 215.23243 * 9 8 5 40 40 H 1.08999 * 109.47178 * 335.23334 * 9 8 5 41 41 H 1.07993 * 119.82653 * 359.97438 * 13 12 10 42 42 H 1.08003 * 119.79388 * 180.25852 * 14 13 12 43 43 H 1.08005 * 119.98170 * 179.73804 * 15 14 13 44 44 H 0.96998 * 120.00435 * 179.97438 * 20 19 17 45 45 H 1.08006 * 120.20322 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6451 3.4245 0.8413 7 6 5.6049 2.8867 0.1264 8 7 3.6931 3.5392 -1.2523 9 6 4.1551 2.9999 -2.5337 10 6 2.9121 4.6372 -1.2256 11 8 2.4614 5.0370 -0.1699 12 6 2.6032 5.3557 -2.4808 13 6 2.6076 6.7546 -2.5060 14 6 2.3255 7.4336 -3.6778 15 6 2.0257 6.7410 -4.8301 16 6 2.0106 5.3336 -4.8226 17 6 1.7036 4.6196 -6.0042 18 1 1.2391 3.6466 -5.9419 19 6 2.0018 5.1738 -7.2541 20 7 2.7467 6.2464 -7.3332 21 14 1.3363 4.3821 -8.8097 22 1 -0.1480 4.3749 -8.7653 23 1 1.7930 5.1549 -9.9927 24 1 1.8354 2.9869 -8.9076 25 6 2.3026 4.6418 -3.6349 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 3.9330 0.9288 0.8909 34 1 3.9338 0.9284 -0.8891 35 1 5.8928 2.4000 1.0581 36 1 6.0399 2.3472 -0.7149 37 1 5.9682 3.9145 0.1264 38 1 3.3905 2.3429 -2.9482 39 1 4.3437 3.8202 -3.2263 40 1 5.0748 2.4354 -2.3799 41 1 2.8367 7.3073 -1.6069 42 1 2.3356 8.5136 -3.6880 43 1 1.8024 7.2782 -5.7401 44 1 2.9537 6.6304 -8.1995 45 1 2.2941 3.5619 -3.6191 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291349542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:52 Heat of formation + Delta-G solvation = -39.448968 kcal Electronic energy + Delta-G solvation = -23393.654388 eV Core-core repulsion = 20181.932365 eV Total energy + Delta-G solvation = -3211.722023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.79261 -37.39240 -36.45264 -34.72233 -33.67245 -32.15076 -29.93382 -29.41803 -28.76513 -26.60604 -25.29343 -24.25237 -22.78400 -21.05343 -20.81873 -20.29388 -18.85666 -17.37148 -16.47751 -15.65362 -15.48701 -15.09835 -14.90066 -14.75056 -14.08736 -13.73485 -13.56249 -13.24779 -13.10797 -12.78099 -12.50328 -12.46325 -12.35040 -12.23291 -11.88417 -11.76098 -11.64533 -11.30555 -11.20850 -11.05804 -11.02351 -10.73312 -10.66290 -10.52008 -10.48304 -10.46023 -10.22812 -9.52466 -9.27582 -9.00912 -8.24310 -7.59238 -7.46166 -6.76926 -4.46214 2.33422 2.74044 3.03946 3.06335 3.13152 3.41935 3.68498 3.90395 4.59682 4.64350 4.97316 5.04787 5.15716 5.30674 5.32177 5.45391 5.48226 5.51595 5.55520 5.69696 5.71944 5.81383 5.85525 5.87903 5.94324 6.00286 6.15240 6.16329 6.19851 6.24819 6.30406 6.38399 6.39434 6.48503 6.77312 6.92316 6.95253 7.04900 7.18516 7.37332 7.64050 7.81540 7.91475 7.96914 8.11284 8.51181 8.78334 8.80599 8.84127 10.17663 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.004616 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.193544 B = 6064.790653 C = 6962.034428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.118 4.118 4 C -0.126 4.126 5 C 0.133 3.867 6 H 0.097 0.903 7 C -0.161 4.161 8 N -0.608 5.608 9 C 0.078 3.922 10 C 0.569 3.431 11 O -0.556 6.556 12 C -0.115 4.115 13 C -0.178 4.178 14 C -0.116 4.116 15 C -0.134 4.134 16 C 0.101 3.899 17 C -0.465 4.465 18 H 0.077 0.923 19 C 0.075 3.925 20 N -0.804 5.804 21 Si 0.910 3.090 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.188 4.188 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.123 0.877 44 H 0.281 0.719 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.942 -9.140 7.700 12.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.156 4.156 4 C -0.164 4.164 5 C 0.030 3.970 6 H 0.115 0.885 7 C -0.219 4.219 8 N -0.342 5.342 9 C -0.065 4.065 10 C 0.361 3.639 11 O -0.435 6.435 12 C -0.118 4.118 13 C -0.198 4.198 14 C -0.135 4.135 15 C -0.154 4.154 16 C 0.099 3.901 17 C -0.495 4.495 18 H 0.095 0.905 19 C -0.142 4.142 20 N -0.431 5.431 21 Si 0.735 3.265 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.208 4.208 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.141 0.859 44 H 0.092 0.908 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.823 -8.783 8.071 12.258 hybrid contribution -0.142 -0.338 -0.909 0.980 sum 2.682 -9.122 7.162 11.903 Atomic orbital electron populations 1.21774 0.96034 1.01165 1.02085 1.21513 0.95849 0.97077 1.01453 1.21567 0.94970 0.96265 1.02773 1.21947 0.96248 0.96112 1.02097 1.21037 0.94476 0.93252 0.88247 0.88457 1.22139 0.95524 1.02388 1.01811 1.47773 1.51208 1.28484 1.06690 1.22036 0.98762 1.00319 0.85358 1.18959 0.76617 0.78873 0.89485 1.90654 1.52709 1.67282 1.32866 1.19276 1.06461 0.94012 0.92024 1.20374 1.10099 0.92006 0.97362 1.20679 1.01540 0.97848 0.93383 1.21576 1.02217 0.94656 0.96916 1.17540 0.88891 0.91940 0.91762 1.19475 1.36211 1.03946 0.89874 0.90524 1.25850 0.92918 0.94410 1.00973 1.69753 1.27409 1.18660 1.27233 0.86333 0.80299 0.79905 0.79966 1.18923 1.20371 1.19066 1.21429 1.08544 0.97974 0.92871 0.92861 0.92543 0.93093 0.92248 0.92478 0.91633 0.92074 0.91362 0.91676 0.91823 0.92267 0.92270 0.92594 0.89361 0.92094 0.88682 0.88693 0.85911 0.90840 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.32 5.93 -26.73 -0.16 -1.47 16 3 C -0.12 -1.53 5.10 -26.73 -0.14 -1.67 16 4 C -0.13 -1.46 4.64 -26.73 -0.12 -1.58 16 5 C 0.13 1.85 2.63 -67.93 -0.18 1.67 16 6 H 0.10 1.54 6.91 -51.93 -0.36 1.18 16 7 C -0.16 -1.83 9.18 37.16 0.34 -1.49 16 8 N -0.61 -10.13 2.21 -175.03 -0.39 -10.52 16 9 C 0.08 1.18 7.86 59.85 0.47 1.65 16 10 C 0.57 11.86 7.32 -12.31 -0.09 11.77 16 11 O -0.56 -12.86 16.28 5.32 0.09 -12.77 16 12 C -0.11 -2.60 5.15 -105.04 -0.54 -3.14 16 13 C -0.18 -4.10 9.65 -38.92 -0.38 -4.48 16 14 C -0.12 -2.67 10.01 -39.72 -0.40 -3.07 16 15 C -0.13 -3.35 8.65 -38.81 -0.34 -3.68 16 16 C 0.10 2.54 5.54 -106.88 -0.59 1.95 16 17 C -0.46 -11.65 9.06 -37.73 -0.34 -11.99 16 18 H 0.08 1.84 7.87 -52.49 -0.41 1.43 16 19 C 0.07 1.80 5.25 -17.34 -0.09 1.71 16 20 N -0.80 -19.93 10.85 55.55 0.60 -19.33 16 21 Si 0.91 18.03 29.57 -169.99 -5.03 13.00 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 25 C -0.19 -4.32 7.37 -38.44 -0.28 -4.60 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.02 7.75 -51.93 -0.40 0.62 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.73 7.51 -51.93 -0.39 0.34 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.62 6.66 -51.93 -0.35 0.28 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.83 6.85 -51.93 -0.36 0.48 16 39 H 0.09 1.55 6.01 -51.93 -0.31 1.24 16 40 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 41 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 42 H 0.09 1.94 8.06 -52.48 -0.42 1.52 16 43 H 0.12 3.16 6.23 -52.48 -0.33 2.83 16 44 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 45 H 0.11 2.22 5.53 -52.48 -0.29 1.93 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -27.56 358.94 -9.10 -36.66 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.31 Total: 7.27 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -2.47 Total: -19.72 kcal Atomic # 7 Polarization: -30.06 SS G_CDS: 0.22 Total: -29.85 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.56 -9.10 -36.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291349542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.792 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds