Wall clock time and date at job start Tue Mar 31 2020 06:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47205 * 2 1 4 4 C 1.53007 * 109.47050 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46909 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47539 * 55.00076 * 5 4 3 7 7 C 1.53000 * 109.46924 * 174.99971 * 5 4 3 8 8 N 1.46505 * 109.47605 * 295.00133 * 5 4 3 9 9 C 1.46502 * 119.99364 * 300.00304 * 8 5 4 10 10 C 1.34766 * 120.00136 * 119.99942 * 8 5 4 11 11 O 1.21551 * 120.00379 * 355.49536 * 10 8 5 12 12 C 1.47893 * 120.00011 * 175.49596 * 10 8 5 13 13 C 1.39917 * 120.02273 * 221.43049 * 12 10 8 14 14 C 1.38335 * 120.35267 * 179.71206 * 13 12 10 15 15 C 1.37751 * 120.41178 * 0.56538 * 14 13 12 16 16 C 1.40749 * 120.04076 * 359.71865 * 15 14 13 17 17 C 1.41432 * 120.17841 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00191 * 209.05052 * 17 16 15 19 19 C 1.39944 * 119.99989 * 29.05132 * 17 16 15 20 20 N 1.30824 * 120.00116 * 10.67879 * 19 17 16 21 21 Si 1.86802 * 119.99981 * 190.67464 * 19 17 16 22 22 H 1.48501 * 109.46781 * 60.00392 * 21 19 17 23 23 H 1.48503 * 109.47108 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47383 * 300.00336 * 21 19 17 25 25 C 1.38993 * 120.02420 * 41.70593 * 12 10 8 26 26 H 1.08997 * 109.46995 * 300.00813 * 1 2 3 27 27 H 1.09004 * 109.46589 * 60.00774 * 1 2 3 28 28 H 1.08999 * 109.46777 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47468 * 239.99362 * 2 1 3 30 30 H 1.09004 * 109.46676 * 119.99773 * 2 1 3 31 31 H 1.09004 * 109.47118 * 299.99502 * 3 2 1 32 32 H 1.09000 * 109.47429 * 59.99338 * 3 2 1 33 33 H 1.08994 * 109.46993 * 299.99395 * 4 3 2 34 34 H 1.09004 * 109.47040 * 60.00027 * 4 3 2 35 35 H 1.08995 * 109.47006 * 300.00183 * 7 5 4 36 36 H 1.08999 * 109.47461 * 60.00197 * 7 5 4 37 37 H 1.09004 * 109.47091 * 180.02562 * 7 5 4 38 38 H 1.08998 * 109.46826 * 95.23905 * 9 8 5 39 39 H 1.09005 * 109.46612 * 215.23243 * 9 8 5 40 40 H 1.08999 * 109.47178 * 335.23334 * 9 8 5 41 41 H 1.07993 * 119.82653 * 359.97438 * 13 12 10 42 42 H 1.08003 * 119.79388 * 180.25852 * 14 13 12 43 43 H 1.08005 * 119.98170 * 179.73804 * 15 14 13 44 44 H 0.96998 * 120.00435 * 179.97438 * 20 19 17 45 45 H 1.08006 * 120.20322 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6451 3.4245 0.8413 7 6 5.6049 2.8867 0.1264 8 7 3.6931 3.5392 -1.2523 9 6 4.1551 2.9999 -2.5337 10 6 2.9121 4.6372 -1.2256 11 8 2.4614 5.0370 -0.1699 12 6 2.6032 5.3557 -2.4808 13 6 2.6076 6.7546 -2.5060 14 6 2.3255 7.4336 -3.6778 15 6 2.0257 6.7410 -4.8301 16 6 2.0106 5.3336 -4.8226 17 6 1.7036 4.6196 -6.0042 18 1 1.2391 3.6466 -5.9419 19 6 2.0018 5.1738 -7.2541 20 7 2.7467 6.2464 -7.3332 21 14 1.3363 4.3821 -8.8097 22 1 -0.1480 4.3749 -8.7653 23 1 1.7930 5.1549 -9.9927 24 1 1.8354 2.9869 -8.9076 25 6 2.3026 4.6418 -3.6349 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 3.9330 0.9288 0.8909 34 1 3.9338 0.9284 -0.8891 35 1 5.8928 2.4000 1.0581 36 1 6.0399 2.3472 -0.7149 37 1 5.9682 3.9145 0.1264 38 1 3.3905 2.3429 -2.9482 39 1 4.3437 3.8202 -3.2263 40 1 5.0748 2.4354 -2.3799 41 1 2.8367 7.3073 -1.6069 42 1 2.3356 8.5136 -3.6880 43 1 1.8024 7.2782 -5.7401 44 1 2.9537 6.6304 -8.1995 45 1 2.2941 3.5619 -3.6191 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291349542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:51 Heat of formation + Delta-G solvation = -51.260146 kcal Electronic energy + Delta-G solvation = -23394.166559 eV Core-core repulsion = 20181.932365 eV Total energy + Delta-G solvation = -3212.234194 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.31844 -39.06627 -37.87606 -35.87101 -35.48329 -33.41454 -31.79554 -31.04058 -29.76279 -27.97014 -27.14773 -25.33256 -24.26630 -22.68643 -21.99482 -21.73901 -20.28663 -19.04712 -17.96509 -17.40705 -16.89713 -16.55542 -16.47978 -16.10107 -15.33449 -15.15638 -14.87082 -14.61404 -14.49169 -14.30894 -13.97163 -13.74132 -13.54734 -13.31556 -13.26619 -13.18598 -12.91291 -12.83751 -12.66784 -12.52613 -12.23986 -12.20394 -12.02723 -11.96542 -11.68011 -11.47842 -11.44077 -11.33726 -11.07100 -10.69408 -9.64286 -9.43573 -9.32488 -8.58181 -6.37627 0.52818 0.93846 1.42523 1.51244 1.53585 1.90473 2.11833 2.24436 2.77192 3.58897 3.66583 3.86790 4.02486 4.06281 4.23187 4.28906 4.34146 4.39338 4.43306 4.53811 4.56814 4.67785 4.73876 4.80425 4.90552 4.92083 4.94053 4.99525 5.02403 5.04632 5.10929 5.16969 5.19507 5.25208 5.33179 5.34848 5.39842 5.48468 5.51536 5.71729 5.83088 6.00081 6.03853 6.22242 6.39045 6.62277 6.92322 6.94417 7.20313 8.38188 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.004616 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.193544 B = 6064.790653 C = 6962.034428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.117 4.117 4 C -0.117 4.117 5 C 0.126 3.874 6 H 0.074 0.926 7 C -0.154 4.154 8 N -0.596 5.596 9 C 0.078 3.922 10 C 0.564 3.436 11 O -0.587 6.587 12 C -0.120 4.120 13 C -0.192 4.192 14 C -0.114 4.114 15 C -0.158 4.158 16 C 0.076 3.924 17 C -0.493 4.493 18 H 0.079 0.921 19 C 0.037 3.963 20 N -0.832 5.832 21 Si 0.981 3.019 22 H -0.264 1.264 23 H -0.271 1.271 24 H -0.258 1.258 25 C -0.184 4.184 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.287 0.713 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 -11.559 7.767 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.155 4.155 4 C -0.155 4.155 5 C 0.024 3.976 6 H 0.092 0.908 7 C -0.211 4.211 8 N -0.327 5.327 9 C -0.064 4.064 10 C 0.355 3.645 11 O -0.469 6.469 12 C -0.123 4.123 13 C -0.212 4.212 14 C -0.132 4.132 15 C -0.178 4.178 16 C 0.073 3.927 17 C -0.523 4.523 18 H 0.097 0.903 19 C -0.177 4.177 20 N -0.458 5.458 21 Si 0.802 3.198 22 H -0.188 1.188 23 H -0.195 1.195 24 H -0.182 1.182 25 C -0.204 4.204 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.135 0.865 43 H 0.128 0.872 44 H 0.098 0.902 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.866 -11.229 8.148 14.402 hybrid contribution -0.424 0.415 -0.851 1.037 sum 3.442 -10.814 7.297 13.493 Atomic orbital electron populations 1.21797 0.96365 1.01984 1.01141 1.21483 0.95588 0.95565 1.02688 1.21535 0.96243 0.97320 1.00409 1.21923 0.94931 0.94541 1.04112 1.21321 0.96362 0.94072 0.85830 0.90765 1.22101 0.93036 1.02057 1.03950 1.47817 1.49371 1.27003 1.08529 1.22083 1.00583 0.99667 0.84113 1.18743 0.77420 0.80049 0.88287 1.90631 1.54317 1.68586 1.33386 1.19571 1.05542 0.94299 0.92873 1.20577 1.10435 0.92559 0.97599 1.20886 1.00504 0.99059 0.92768 1.21543 1.04243 0.94898 0.97114 1.17888 0.89519 0.92427 0.92821 1.19733 1.37317 1.04466 0.90742 0.90262 1.26664 0.92563 0.94753 1.03741 1.69819 1.27905 1.19701 1.28397 0.85258 0.79382 0.79215 0.75919 1.18829 1.19536 1.18198 1.21534 1.07860 0.98615 0.92358 0.93165 0.94201 0.91365 0.91566 0.90512 0.94931 0.93609 0.88437 0.90355 0.89073 0.90760 0.93825 0.92164 0.91901 0.88304 0.88013 0.86463 0.87229 0.90204 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 9.91 71.98 0.71 -2.47 16 2 C -0.12 -2.26 5.93 30.59 0.18 -2.08 16 3 C -0.12 -2.92 5.10 30.59 0.16 -2.76 16 4 C -0.12 -2.39 4.64 30.60 0.14 -2.25 16 5 C 0.13 3.29 2.63 44.99 0.12 3.41 16 6 H 0.07 2.32 6.91 -2.38 -0.02 2.30 16 7 C -0.15 -3.05 9.18 71.98 0.66 -2.39 16 8 N -0.60 -19.47 2.21 -825.94 -1.83 -21.30 16 9 C 0.08 2.25 7.86 127.77 1.00 3.25 16 10 C 0.56 23.89 7.32 86.80 0.64 24.53 16 11 O -0.59 -27.83 16.28 -3.87 -0.06 -27.89 16 12 C -0.12 -5.54 5.15 -20.13 -0.10 -5.65 16 13 C -0.19 -9.01 9.65 22.70 0.22 -8.79 16 14 C -0.11 -5.36 10.01 22.18 0.22 -5.14 16 15 C -0.16 -8.16 8.65 22.77 0.20 -7.96 16 16 C 0.08 3.92 5.54 -21.32 -0.12 3.80 16 17 C -0.49 -25.10 9.06 23.47 0.21 -24.89 16 18 H 0.08 3.85 7.87 -2.91 -0.02 3.83 16 19 C 0.04 1.77 5.25 85.26 0.45 2.22 16 20 N -0.83 -41.74 10.85 21.83 0.24 -41.50 16 21 Si 0.98 36.59 29.57 68.60 2.03 38.62 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 23 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 25 C -0.18 -8.62 7.37 23.01 0.17 -8.45 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.03 1.01 7.75 -2.38 -0.02 0.99 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.44 7.51 -2.38 -0.02 1.42 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.26 6.66 -2.39 -0.02 1.25 16 37 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.06 1.71 6.85 -2.39 -0.02 1.70 16 39 H 0.06 2.19 6.01 -2.38 -0.01 2.17 16 40 H 0.10 2.11 6.44 -2.39 -0.02 2.10 16 41 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 42 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 43 H 0.11 5.86 6.23 -2.91 -0.02 5.84 16 44 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 45 H 0.12 5.09 5.53 -2.91 -0.02 5.07 16 Total: -1.00 -61.50 358.94 6.19 -55.31 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.96 Total: 32.39 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 4.86 Total: -35.62 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -1.59 Total: -62.80 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.06 Total: -27.89 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Total: -61.50 6.19 -55.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291349542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.051 kcal (2) G-P(sol) polarization free energy of solvation -61.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds