Wall clock time and date at job start Tue Mar 31 2020 06:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47079 * 2 1 4 4 C 1.53004 * 109.47286 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47263 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.47345 * 305.00309 * 5 4 3 7 7 C 1.52996 * 109.47286 * 185.00081 * 5 4 3 8 8 N 1.46505 * 109.46868 * 65.00085 * 5 4 3 9 9 C 1.46493 * 120.00160 * 60.00176 * 8 5 4 10 10 C 1.34781 * 119.99912 * 239.99967 * 8 5 4 11 11 O 1.21555 * 119.99836 * 4.79285 * 10 8 5 12 12 C 1.47878 * 119.99909 * 184.79122 * 10 8 5 13 13 C 1.39922 * 120.02545 * 22.19851 * 12 10 8 14 14 C 1.38328 * 120.35531 * 179.71260 * 13 12 10 15 15 C 1.37751 * 120.41569 * 0.56045 * 14 13 12 16 16 C 1.40758 * 120.03828 * 359.71946 * 15 14 13 17 17 C 1.41431 * 120.17493 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00460 * 335.08066 * 17 16 15 19 19 C 1.39941 * 119.99645 * 155.08526 * 17 16 15 20 20 N 1.30831 * 119.99919 * 342.87719 * 19 17 16 21 21 Si 1.86805 * 120.00163 * 162.88029 * 19 17 16 22 22 H 1.48503 * 109.47038 * 89.99630 * 21 19 17 23 23 H 1.48494 * 109.47002 * 209.99922 * 21 19 17 24 24 H 1.48502 * 109.46584 * 329.99766 * 21 19 17 25 25 C 1.38998 * 120.02533 * 202.46861 * 12 10 8 26 26 H 1.08996 * 109.47259 * 59.99960 * 1 2 3 27 27 H 1.09003 * 109.47224 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47141 * 299.99732 * 1 2 3 29 29 H 1.09003 * 109.47356 * 239.99858 * 2 1 3 30 30 H 1.09003 * 109.47653 * 119.99481 * 2 1 3 31 31 H 1.09002 * 109.47612 * 59.99964 * 3 2 1 32 32 H 1.09004 * 109.46875 * 299.99887 * 3 2 1 33 33 H 1.09002 * 109.46877 * 59.99450 * 4 3 2 34 34 H 1.08996 * 109.47103 * 300.00071 * 4 3 2 35 35 H 1.08995 * 109.47128 * 180.02562 * 7 5 4 36 36 H 1.08999 * 109.46927 * 300.00004 * 7 5 4 37 37 H 1.08995 * 109.47226 * 60.00046 * 7 5 4 38 38 H 1.08994 * 109.47630 * 84.16874 * 9 8 5 39 39 H 1.09003 * 109.47111 * 204.17090 * 9 8 5 40 40 H 1.09003 * 109.47151 * 324.16657 * 9 8 5 41 41 H 1.07997 * 119.82108 * 359.97171 * 13 12 10 42 42 H 1.08000 * 119.79427 * 180.25130 * 14 13 12 43 43 H 1.08001 * 119.98309 * 179.73596 * 15 14 13 44 44 H 0.97006 * 119.99502 * 180.02562 * 20 19 17 45 45 H 1.07996 * 120.20045 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 -0.0013 6 1 3.6449 3.4239 -0.8431 7 6 5.6047 2.8869 -0.1277 8 7 3.6929 3.5404 1.2506 9 6 4.1549 3.0023 2.5324 10 6 2.9118 4.6384 1.2229 11 8 2.4569 5.0342 0.1674 12 6 2.6080 5.3615 2.4766 13 6 3.4522 5.2273 3.5844 14 6 3.1778 5.9051 4.7585 15 6 2.0647 6.7109 4.8548 16 6 1.2008 6.8536 3.7528 17 6 0.0574 7.6806 3.8484 18 1 -0.3875 7.8778 4.8125 19 6 -0.4976 8.2432 2.6935 20 7 0.2022 8.2938 1.5892 21 14 -2.2376 8.9222 2.7285 22 1 -2.2015 10.3568 3.1103 23 1 -2.8503 8.7832 1.3830 24 1 -3.0439 8.1661 3.7202 25 6 1.4807 6.1706 2.5572 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9337 0.9286 0.8891 35 1 5.9680 3.9145 -0.1277 36 1 6.0397 2.3481 0.7141 37 1 5.8927 2.3994 -1.0590 38 1 5.1529 3.3837 2.7481 39 1 3.4700 3.3087 3.3231 40 1 4.1854 1.9139 2.4797 41 1 4.3249 4.5943 3.5210 42 1 3.8378 5.7981 5.6067 43 1 1.8549 7.2336 5.7764 44 1 -0.1824 8.6842 0.7888 45 1 0.8242 6.2740 1.7059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291349547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:55 Heat of formation + Delta-G solvation = -21.156635 kcal Electronic energy + Delta-G solvation = -23469.319478 eV Core-core repulsion = 20258.390670 eV Total energy + Delta-G solvation = -3210.928808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.78067 -37.35461 -36.35602 -34.77075 -33.76434 -32.15686 -29.75741 -29.41434 -28.80821 -26.81894 -25.20647 -24.23100 -22.73996 -21.01841 -20.93244 -20.11454 -18.73161 -17.56564 -16.29249 -15.70109 -15.35521 -15.19772 -14.88380 -14.64312 -14.05271 -13.72395 -13.55585 -13.09789 -12.98989 -12.81384 -12.56122 -12.39926 -12.33409 -12.30451 -11.99963 -11.82246 -11.61695 -11.28266 -11.10542 -11.04229 -10.91032 -10.69018 -10.62109 -10.46372 -10.45719 -10.25280 -9.96858 -9.57967 -9.19939 -8.84896 -8.20034 -7.58192 -7.46026 -6.76578 -4.38965 2.28032 2.82375 3.08332 3.11198 3.17064 3.50217 3.83854 3.93253 4.62867 4.66591 4.98417 5.06869 5.18858 5.32518 5.34841 5.40682 5.50826 5.57800 5.59897 5.68169 5.76488 5.78321 5.82812 5.87138 5.93844 6.01267 6.10833 6.15442 6.17751 6.23586 6.29302 6.36987 6.40884 6.51237 6.72555 6.98515 7.02007 7.11290 7.23945 7.41368 7.69451 7.80887 7.93176 8.04966 8.20210 8.52648 8.82608 8.85947 8.97158 10.17425 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.004761 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.174489 B = 5879.799315 C = 6778.962418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.119 4.119 4 C -0.126 4.126 5 C 0.133 3.867 6 H 0.098 0.902 7 C -0.159 4.159 8 N -0.612 5.612 9 C 0.067 3.933 10 C 0.564 3.436 11 O -0.544 6.544 12 C -0.125 4.125 13 C -0.238 4.238 14 C -0.101 4.101 15 C -0.212 4.212 16 C 0.099 3.901 17 C -0.462 4.462 18 H 0.080 0.920 19 C 0.073 3.927 20 N -0.783 5.783 21 Si 0.908 3.092 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.260 1.260 25 C -0.095 4.095 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.104 0.896 40 H 0.054 0.946 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.284 0.716 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.374 -12.944 -1.784 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.156 4.156 4 C -0.164 4.164 5 C 0.030 3.970 6 H 0.116 0.884 7 C -0.217 4.217 8 N -0.346 5.346 9 C -0.076 4.076 10 C 0.357 3.643 11 O -0.422 6.422 12 C -0.129 4.129 13 C -0.258 4.258 14 C -0.119 4.119 15 C -0.232 4.232 16 C 0.097 3.903 17 C -0.491 4.491 18 H 0.098 0.902 19 C -0.146 4.146 20 N -0.407 5.407 21 Si 0.732 3.268 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.184 1.184 25 C -0.116 4.116 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.134 0.866 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.095 0.905 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.118 -12.637 -2.611 13.882 hybrid contribution -0.573 0.403 0.025 0.701 sum 4.545 -12.234 -2.586 13.304 Atomic orbital electron populations 1.21774 0.96017 1.01107 1.02181 1.21510 0.95861 0.97110 1.01344 1.21572 0.94936 0.96179 1.02954 1.21939 0.96268 0.96266 1.01941 1.21010 0.94359 0.93145 0.88500 0.88391 1.22114 0.95631 1.02295 1.01649 1.47719 1.51866 1.28742 1.06283 1.22456 1.00212 0.97993 0.86911 1.18957 0.76563 0.79043 0.89775 1.90690 1.51869 1.66982 1.32639 1.19451 0.99382 1.01726 0.92310 1.21222 1.02827 1.07756 0.93960 1.20480 0.97236 0.97784 0.96398 1.21115 0.97090 1.05284 0.99718 1.17579 0.91681 0.90287 0.90770 1.19568 1.09789 1.25512 0.94204 0.90184 1.25963 0.99222 0.94577 0.94844 1.69807 1.36464 1.32489 1.01920 0.86314 0.82097 0.79638 0.78744 1.19433 1.19988 1.18407 1.21592 0.96206 0.94347 0.99409 0.92774 0.93132 0.92568 0.92484 0.92385 0.91592 0.91957 0.91399 0.91764 0.92304 0.92537 0.91923 0.93074 0.87789 0.92757 0.86628 0.88997 0.88775 0.90468 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.12 -1.32 5.93 -26.73 -0.16 -1.48 16 3 C -0.12 -1.58 5.10 -26.73 -0.14 -1.72 16 4 C -0.13 -1.48 4.63 -26.73 -0.12 -1.61 16 5 C 0.13 1.91 2.64 -67.93 -0.18 1.73 16 6 H 0.10 1.65 6.91 -51.93 -0.36 1.29 16 7 C -0.16 -1.86 9.19 37.16 0.34 -1.52 16 8 N -0.61 -10.31 2.21 -175.03 -0.39 -10.70 16 9 C 0.07 0.93 7.76 59.84 0.46 1.39 16 10 C 0.56 12.47 7.52 -12.31 -0.09 12.38 16 11 O -0.54 -13.79 15.89 5.32 0.08 -13.70 16 12 C -0.13 -2.97 5.55 -105.04 -0.58 -3.56 16 13 C -0.24 -4.97 7.56 -38.92 -0.29 -5.26 16 14 C -0.10 -2.14 10.01 -39.73 -0.40 -2.53 16 15 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 16 C 0.10 2.64 5.57 -106.87 -0.60 2.04 16 17 C -0.46 -12.21 9.05 -37.73 -0.34 -12.55 16 18 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 19 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 20 N -0.78 -21.05 10.94 55.55 0.61 -20.45 16 21 Si 0.91 18.89 29.59 -169.99 -5.03 13.86 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 25 C -0.10 -2.55 8.23 -38.44 -0.32 -2.87 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.05 7.75 -51.93 -0.40 0.64 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.70 6.50 -51.93 -0.34 0.36 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.65 7.20 -51.93 -0.37 0.27 16 39 H 0.10 1.61 4.93 -51.93 -0.26 1.35 16 40 H 0.05 0.62 6.36 -51.93 -0.33 0.29 16 41 H 0.12 2.02 4.15 -52.49 -0.22 1.80 16 42 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 44 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 45 H 0.13 3.78 5.91 -52.49 -0.31 3.47 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -29.41 356.53 -9.05 -38.47 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.19 Total: 7.68 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -2.51 Total: -20.53 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.22 Total: -31.15 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.08 Total: -13.70 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.41 -9.05 -38.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291349547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.310 kcal (2) G-P(sol) polarization free energy of solvation -29.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds