Wall clock time and date at job start Tue Mar 31 2020 06:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47079 * 2 1 4 4 C 1.53004 * 109.47286 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47263 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.47345 * 305.00309 * 5 4 3 7 7 C 1.52996 * 109.47286 * 185.00081 * 5 4 3 8 8 N 1.46505 * 109.46868 * 65.00085 * 5 4 3 9 9 C 1.46493 * 120.00160 * 60.00176 * 8 5 4 10 10 C 1.34781 * 119.99912 * 239.99967 * 8 5 4 11 11 O 1.21555 * 119.99836 * 4.79285 * 10 8 5 12 12 C 1.47878 * 119.99909 * 184.79122 * 10 8 5 13 13 C 1.39922 * 120.02545 * 22.19851 * 12 10 8 14 14 C 1.38328 * 120.35531 * 179.71260 * 13 12 10 15 15 C 1.37751 * 120.41569 * 0.56045 * 14 13 12 16 16 C 1.40758 * 120.03828 * 359.71946 * 15 14 13 17 17 C 1.41431 * 120.17493 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00460 * 335.08066 * 17 16 15 19 19 C 1.39941 * 119.99645 * 155.08526 * 17 16 15 20 20 N 1.30831 * 119.99919 * 342.87719 * 19 17 16 21 21 Si 1.86805 * 120.00163 * 162.88029 * 19 17 16 22 22 H 1.48503 * 109.47038 * 89.99630 * 21 19 17 23 23 H 1.48494 * 109.47002 * 209.99922 * 21 19 17 24 24 H 1.48502 * 109.46584 * 329.99766 * 21 19 17 25 25 C 1.38998 * 120.02533 * 202.46861 * 12 10 8 26 26 H 1.08996 * 109.47259 * 59.99960 * 1 2 3 27 27 H 1.09003 * 109.47224 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47141 * 299.99732 * 1 2 3 29 29 H 1.09003 * 109.47356 * 239.99858 * 2 1 3 30 30 H 1.09003 * 109.47653 * 119.99481 * 2 1 3 31 31 H 1.09002 * 109.47612 * 59.99964 * 3 2 1 32 32 H 1.09004 * 109.46875 * 299.99887 * 3 2 1 33 33 H 1.09002 * 109.46877 * 59.99450 * 4 3 2 34 34 H 1.08996 * 109.47103 * 300.00071 * 4 3 2 35 35 H 1.08995 * 109.47128 * 180.02562 * 7 5 4 36 36 H 1.08999 * 109.46927 * 300.00004 * 7 5 4 37 37 H 1.08995 * 109.47226 * 60.00046 * 7 5 4 38 38 H 1.08994 * 109.47630 * 84.16874 * 9 8 5 39 39 H 1.09003 * 109.47111 * 204.17090 * 9 8 5 40 40 H 1.09003 * 109.47151 * 324.16657 * 9 8 5 41 41 H 1.07997 * 119.82108 * 359.97171 * 13 12 10 42 42 H 1.08000 * 119.79427 * 180.25130 * 14 13 12 43 43 H 1.08001 * 119.98309 * 179.73596 * 15 14 13 44 44 H 0.97006 * 119.99502 * 180.02562 * 20 19 17 45 45 H 1.07996 * 120.20045 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 -0.0013 6 1 3.6449 3.4239 -0.8431 7 6 5.6047 2.8869 -0.1277 8 7 3.6929 3.5404 1.2506 9 6 4.1549 3.0023 2.5324 10 6 2.9118 4.6384 1.2229 11 8 2.4569 5.0342 0.1674 12 6 2.6080 5.3615 2.4766 13 6 3.4522 5.2273 3.5844 14 6 3.1778 5.9051 4.7585 15 6 2.0647 6.7109 4.8548 16 6 1.2008 6.8536 3.7528 17 6 0.0574 7.6806 3.8484 18 1 -0.3875 7.8778 4.8125 19 6 -0.4976 8.2432 2.6935 20 7 0.2022 8.2938 1.5892 21 14 -2.2376 8.9222 2.7285 22 1 -2.2015 10.3568 3.1103 23 1 -2.8503 8.7832 1.3830 24 1 -3.0439 8.1661 3.7202 25 6 1.4807 6.1706 2.5572 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9337 0.9286 0.8891 35 1 5.9680 3.9145 -0.1277 36 1 6.0397 2.3481 0.7141 37 1 5.8927 2.3994 -1.0590 38 1 5.1529 3.3837 2.7481 39 1 3.4700 3.3087 3.3231 40 1 4.1854 1.9139 2.4797 41 1 4.3249 4.5943 3.5210 42 1 3.8378 5.7981 5.6067 43 1 1.8549 7.2336 5.7764 44 1 -0.1824 8.6842 0.7888 45 1 0.8242 6.2740 1.7059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291349547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:54 Heat of formation + Delta-G solvation = -36.093817 kcal Electronic energy + Delta-G solvation = -23469.967203 eV Core-core repulsion = 20258.390670 eV Total energy + Delta-G solvation = -3211.576533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.34233 -39.02822 -37.85120 -36.07267 -35.48076 -33.49691 -31.47131 -31.22116 -29.79905 -28.19189 -27.04327 -25.33604 -24.24432 -22.80117 -21.98192 -21.54340 -20.21769 -19.33734 -17.78726 -17.47578 -16.74048 -16.65112 -16.51101 -16.03620 -15.27808 -15.16516 -14.90617 -14.59059 -14.50819 -14.19854 -14.09255 -13.73521 -13.57122 -13.41894 -13.30538 -13.28160 -12.91898 -12.81482 -12.60421 -12.47389 -12.22550 -12.01695 -11.97316 -11.88171 -11.66532 -11.48608 -11.46326 -11.29644 -11.06915 -10.57200 -9.65789 -9.39539 -9.31325 -8.65471 -6.38126 0.44313 1.00851 1.34001 1.44996 1.50710 2.05083 2.14612 2.18138 2.76388 3.61127 3.68242 3.92624 4.00875 4.06119 4.24462 4.28470 4.35878 4.39905 4.48888 4.55087 4.65882 4.69758 4.75404 4.80968 4.88790 4.90727 4.91867 4.97557 5.03282 5.08334 5.09842 5.18393 5.22317 5.25413 5.31225 5.33977 5.38306 5.48296 5.52959 5.76010 5.86287 5.97932 6.05607 6.29643 6.43104 6.63822 6.88011 6.95758 7.31253 8.30435 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.004761 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.174489 B = 5879.799315 C = 6778.962418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.119 4.119 4 C -0.115 4.115 5 C 0.125 3.875 6 H 0.062 0.938 7 C -0.150 4.150 8 N -0.597 5.597 9 C 0.056 3.944 10 C 0.556 3.444 11 O -0.594 6.594 12 C -0.137 4.137 13 C -0.213 4.213 14 C -0.098 4.098 15 C -0.217 4.217 16 C 0.067 3.933 17 C -0.500 4.500 18 H 0.084 0.916 19 C 0.028 3.972 20 N -0.829 5.829 21 Si 0.982 3.018 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.253 1.253 25 C -0.135 4.135 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.161 0.839 42 H 0.140 0.860 43 H 0.107 0.893 44 H 0.285 0.715 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.805 -15.748 -0.368 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.156 4.156 4 C -0.153 4.153 5 C 0.022 3.978 6 H 0.080 0.920 7 C -0.208 4.208 8 N -0.329 5.329 9 C -0.085 4.085 10 C 0.347 3.653 11 O -0.476 6.476 12 C -0.141 4.141 13 C -0.232 4.232 14 C -0.116 4.116 15 C -0.237 4.237 16 C 0.065 3.935 17 C -0.530 4.530 18 H 0.102 0.898 19 C -0.186 4.186 20 N -0.454 5.454 21 Si 0.802 3.198 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.177 1.177 25 C -0.155 4.155 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.178 0.822 42 H 0.158 0.842 43 H 0.125 0.875 44 H 0.095 0.905 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.595 -15.489 -1.161 17.290 hybrid contribution -1.143 1.106 -0.371 1.633 sum 6.452 -14.383 -1.532 15.838 Atomic orbital electron populations 1.21806 0.96615 1.02024 1.00955 1.21476 0.95368 0.95316 1.02931 1.21544 0.96597 0.97404 1.00102 1.21910 0.94542 0.94507 1.04352 1.21271 0.96466 0.94007 0.86014 0.92010 1.22059 0.92751 1.01923 1.04051 1.47752 1.49686 1.26765 1.08712 1.22666 1.00708 1.00436 0.84657 1.18887 0.77391 0.80478 0.88541 1.90658 1.54159 1.68839 1.33974 1.19784 0.98868 1.01252 0.94155 1.21792 1.02702 1.06293 0.92432 1.20988 0.96638 0.96081 0.97916 1.21430 0.97486 1.05591 0.99213 1.17922 0.92883 0.90962 0.91746 1.19857 1.11217 1.26998 0.94888 0.89822 1.26877 1.03225 0.94477 0.94043 1.69928 1.38455 1.34328 1.02725 0.85214 0.76531 0.79347 0.78716 1.18101 1.19848 1.17660 1.21384 0.97876 0.97324 0.98936 0.93709 0.91068 0.94214 0.90565 0.90884 0.94961 0.94536 0.88645 0.89419 0.94092 0.90076 0.89496 0.90381 0.89349 0.89017 0.82181 0.84234 0.87500 0.90477 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.91 71.98 0.71 -2.66 16 2 C -0.11 -2.25 5.93 30.59 0.18 -2.07 16 3 C -0.12 -3.12 5.10 30.60 0.16 -2.96 16 4 C -0.12 -2.37 4.63 30.60 0.14 -2.23 16 5 C 0.13 3.40 2.64 44.99 0.12 3.52 16 6 H 0.06 2.15 6.91 -2.38 -0.02 2.14 16 7 C -0.15 -2.99 9.19 71.98 0.66 -2.33 16 8 N -0.60 -19.45 2.21 -825.96 -1.83 -21.27 16 9 C 0.06 1.33 7.76 127.77 0.99 2.32 16 10 C 0.56 25.46 7.52 86.80 0.65 26.11 16 11 O -0.59 -32.49 15.89 -3.89 -0.06 -32.55 16 12 C -0.14 -6.69 5.55 -20.13 -0.11 -6.80 16 13 C -0.21 -8.45 7.56 22.70 0.17 -8.28 16 14 C -0.10 -3.91 10.01 22.18 0.22 -3.69 16 15 C -0.22 -10.32 9.78 22.77 0.22 -10.10 16 16 C 0.07 3.73 5.57 -21.32 -0.12 3.61 16 17 C -0.50 -27.93 9.05 23.47 0.21 -27.72 16 18 H 0.08 4.39 7.90 -2.91 -0.02 4.37 16 19 C 0.03 1.52 5.15 85.25 0.44 1.96 16 20 N -0.83 -48.09 10.94 21.83 0.24 -47.86 16 21 Si 0.98 40.68 29.59 68.60 2.03 42.71 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 25 C -0.13 -7.71 8.23 23.01 0.19 -7.52 16 26 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 31 H 0.03 1.04 7.75 -2.39 -0.02 1.03 16 32 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.44 6.50 -2.39 -0.02 1.42 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.25 7.67 -2.39 -0.02 1.23 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.52 7.20 -2.39 -0.02 1.50 16 39 H 0.09 2.43 4.93 -2.39 -0.01 2.42 16 40 H 0.09 1.57 6.36 -2.39 -0.02 1.55 16 41 H 0.16 4.86 4.15 -2.91 -0.01 4.85 16 42 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 43 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 44 H 0.28 15.30 8.30 -92.70 -0.77 14.53 16 45 H 0.09 5.91 5.91 -2.91 -0.02 5.90 16 Total: -1.00 -72.72 356.53 6.19 -66.53 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.96 Total: 31.24 kcal Atomic # 6 Polarization: -43.65 SS G_CDS: 4.84 Total: -38.81 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.59 Total: -69.13 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.06 Total: -32.55 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -72.72 6.19 -66.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291349547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.439 kcal (2) G-P(sol) polarization free energy of solvation -72.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds