Wall clock time and date at job start Tue Mar 31 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47039 * 2 1 4 4 C 1.38239 * 120.00086 * 269.72906 * 3 2 1 5 5 C 1.38233 * 120.00132 * 179.76091 * 4 3 2 6 6 C 1.38242 * 119.99757 * 0.51260 * 5 4 3 7 7 C 1.50697 * 119.99867 * 179.72172 * 6 5 4 8 8 C 1.53007 * 109.47219 * 324.74307 * 7 6 5 9 9 C 1.53000 * 109.47372 * 84.74412 * 7 6 5 10 10 N 1.46504 * 109.46854 * 204.74508 * 7 6 5 11 11 C 1.34777 * 119.99784 * 181.12287 * 10 7 6 12 12 O 1.21280 * 120.00044 * 0.02562 * 11 10 7 13 13 C 1.50699 * 119.99968 * 179.97438 * 11 10 7 14 14 C 1.53001 * 109.46938 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.46938 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00148 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00354 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99592 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00524 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46791 * 59.99691 * 19 17 15 21 21 H 1.48497 * 109.47388 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46818 * 300.00120 * 19 17 15 23 23 C 1.38228 * 119.99917 * 359.74034 * 6 5 4 24 24 C 1.38234 * 120.00124 * 90.00034 * 3 2 1 25 25 H 1.09006 * 109.46915 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46948 * 299.99435 * 1 2 3 27 27 H 1.08993 * 109.47376 * 59.99916 * 1 2 3 28 28 H 1.09000 * 109.46948 * 240.00565 * 2 1 3 29 29 H 1.09002 * 109.47450 * 119.99909 * 2 1 3 30 30 H 1.07999 * 119.99941 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.00336 * 180.22559 * 5 4 3 32 32 H 1.09000 * 109.46716 * 60.00254 * 8 7 6 33 33 H 1.08993 * 109.47083 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.46489 * 300.00236 * 8 7 6 35 35 H 1.08999 * 109.46995 * 59.99621 * 9 7 6 36 36 H 1.08993 * 109.47408 * 180.02562 * 9 7 6 37 37 H 1.09001 * 109.46858 * 299.99951 * 9 7 6 38 38 H 0.96988 * 120.00116 * 1.12049 * 10 7 6 39 39 H 1.08995 * 109.47245 * 300.00528 * 13 11 10 40 40 H 1.09001 * 109.47020 * 60.00550 * 13 11 10 41 41 H 1.08995 * 109.47579 * 300.00317 * 14 13 11 42 42 H 1.09003 * 109.47327 * 60.00395 * 14 13 11 43 43 H 0.96996 * 119.99719 * 180.02562 * 18 17 15 44 44 H 1.07998 * 120.00061 * 179.97438 * 23 6 5 45 45 H 1.07998 * 120.00011 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7241 3.3756 -1.1972 6 6 2.9545 4.0272 0.0000 7 6 3.4577 5.4477 0.0000 8 6 4.4132 5.6503 -1.1777 9 6 2.2740 6.4081 -0.1326 10 7 4.1654 5.7151 1.2546 11 6 4.6853 6.9364 1.4879 12 8 4.5669 7.8143 0.6595 13 6 5.4127 7.2117 2.7787 14 6 5.8988 8.6624 2.7908 15 6 6.6268 8.9374 4.0813 16 1 6.7326 8.1556 4.8188 17 6 7.1579 10.1871 4.3205 18 7 7.0296 11.1390 3.4220 19 14 8.0609 10.5279 5.9198 20 1 9.2265 9.6148 6.0343 21 1 8.5327 11.9359 5.9316 22 1 7.1420 10.3035 7.0645 23 6 2.7238 3.3757 1.1971 24 6 2.2627 2.0725 1.1971 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0926 1.5599 -2.1325 31 1 2.9048 3.8845 -2.1325 32 1 3.8866 5.4514 -2.1111 33 1 4.7775 6.6776 -1.1774 34 1 5.2564 4.9661 -1.0832 35 1 1.5933 6.2637 0.7064 36 1 2.6380 7.4355 -0.1330 37 1 1.7475 6.2091 -1.0660 38 1 4.2597 5.0132 1.9173 39 1 4.7373 7.0481 3.6184 40 1 6.2677 6.5409 2.8641 41 1 6.5741 8.8263 1.9511 42 1 5.0437 9.3329 2.7056 43 1 7.4035 12.0181 3.5901 44 1 2.9042 3.8846 2.1324 45 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291381375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:34 Heat of formation + Delta-G solvation = -36.694250 kcal Electronic energy + Delta-G solvation = -22572.170458 eV Core-core repulsion = 19360.567889 eV Total energy + Delta-G solvation = -3211.602570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46776 -38.99778 -36.31417 -33.72254 -33.40279 -32.05146 -31.10327 -30.33368 -28.86487 -27.16626 -25.71574 -24.42966 -22.98530 -22.10898 -21.32361 -19.91985 -19.22668 -17.47323 -16.49738 -15.86004 -15.59289 -15.22746 -14.88181 -14.75631 -14.40875 -14.04855 -14.00451 -13.65194 -13.57783 -13.27873 -13.20509 -12.64978 -12.53436 -12.21823 -12.03499 -12.00080 -11.65633 -11.55387 -11.44771 -11.12423 -11.12125 -11.00096 -10.87727 -10.71823 -10.60351 -9.91944 -9.60636 -9.12100 -9.09773 -8.95794 -8.83867 -8.55027 -8.29791 -5.94326 -3.98563 1.12716 1.22367 3.29086 3.35501 3.39862 3.41353 3.48022 3.63228 4.38876 4.48986 4.54910 4.59704 4.81659 4.85079 5.02847 5.11182 5.19881 5.23566 5.27158 5.36925 5.40458 5.52224 5.56385 5.61086 5.74031 5.78365 5.85093 5.87259 5.91162 5.95856 6.03763 6.21063 6.25133 6.25922 6.33295 6.41127 6.47912 6.50956 6.80726 6.89538 6.93037 7.76138 7.89096 7.95898 8.09422 8.41169 8.84099 9.10043 9.64727 11.16547 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030258 B = 0.002819 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.160170 B = 9928.855033 C =10548.697482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.115 4.115 5 C -0.107 4.107 6 C -0.081 4.081 7 C 0.215 3.785 8 C -0.162 4.162 9 C -0.158 4.158 10 N -0.738 5.738 11 C 0.513 3.487 12 O -0.529 6.529 13 C -0.131 4.131 14 C 0.039 3.961 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.115 4.115 24 C -0.113 4.113 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.395 0.605 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.261 0.739 44 H 0.124 0.876 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.237 -22.613 -8.478 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.133 4.133 5 C -0.126 4.126 6 C -0.081 4.081 7 C 0.128 3.872 8 C -0.219 4.219 9 C -0.216 4.216 10 N -0.394 5.394 11 C 0.302 3.698 12 O -0.405 6.405 13 C -0.171 4.171 14 C 0.001 3.999 15 C -0.566 4.566 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.133 4.133 24 C -0.131 4.131 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.231 0.769 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.142 0.858 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.270 -21.757 -9.117 26.590 hybrid contribution 0.544 -0.169 1.235 1.360 sum -11.726 -21.925 -7.882 26.083 Atomic orbital electron populations 1.21750 0.94752 1.01620 1.02296 1.20536 0.96163 0.92723 1.02768 1.19896 0.99432 0.96267 0.93263 1.20989 1.00068 0.94773 0.97485 1.21021 0.99285 0.94579 0.97675 1.19951 0.99466 0.95032 0.93653 1.19019 0.92220 0.90288 0.85634 1.22273 0.98909 1.04480 0.96283 1.22216 0.96431 1.01619 1.01328 1.46496 1.58876 1.14200 1.19802 1.21474 0.77708 0.80806 0.89793 1.90597 1.57720 1.44780 1.47368 1.21878 0.99114 1.03771 0.92365 1.18875 0.96704 0.87295 0.97004 1.21194 1.35707 0.96753 1.02906 0.92722 1.25025 0.96333 0.96332 0.96706 1.69990 1.45418 1.03127 1.34312 0.86656 0.80117 0.77222 0.83946 1.20274 1.21299 1.20270 1.20975 0.99727 0.94843 0.97750 1.20988 0.99828 0.94714 0.97564 0.92475 0.92515 0.92559 0.91137 0.91085 0.86157 0.85611 0.92070 0.89692 0.92633 0.92766 0.89384 0.92289 0.76921 0.90384 0.90370 0.95837 0.95828 0.92923 0.85819 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.53 16 2 C -0.08 -0.56 6.07 -27.88 -0.17 -0.73 16 3 C -0.09 -0.78 5.13 -104.62 -0.54 -1.31 16 4 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 5 C -0.11 -1.09 9.15 -39.58 -0.36 -1.45 16 6 C -0.08 -0.91 4.80 -104.63 -0.50 -1.42 16 7 C 0.21 2.85 0.89 -132.97 -0.12 2.73 16 8 C -0.16 -2.18 7.86 37.16 0.29 -1.89 16 9 C -0.16 -2.19 8.37 37.16 0.31 -1.88 16 10 N -0.74 -10.72 4.88 -48.68 -0.24 -10.96 16 11 C 0.51 9.76 7.25 -10.99 -0.08 9.68 16 12 O -0.53 -11.90 12.19 5.56 0.07 -11.83 16 13 C -0.13 -2.68 5.64 -27.88 -0.16 -2.83 16 14 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 15 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.54 13.29 55.43 0.74 -26.80 16 19 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.11 -1.20 9.02 -39.59 -0.36 -1.56 16 24 C -0.11 -1.05 9.70 -39.58 -0.38 -1.43 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.13 1.13 6.33 -52.49 -0.33 0.79 16 32 H 0.06 0.68 6.52 -51.93 -0.34 0.34 16 33 H 0.08 1.41 6.25 -51.93 -0.32 1.08 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.48 6.09 -51.93 -0.32 1.17 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.40 4.77 6.40 -40.82 -0.26 4.51 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.12 1.19 6.42 -52.49 -0.34 0.85 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 361.19 15.07 5.44 5.44 Total: -1.00 -32.98 361.19 -8.98 -41.96 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.36 Total: 2.28 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -2.61 Total: -16.87 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.50 Total: -37.76 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.98 -8.98 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291381375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.266 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds