Wall clock time and date at job start Tue Mar 31 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47039 * 2 1 4 4 C 1.38239 * 120.00086 * 269.72906 * 3 2 1 5 5 C 1.38233 * 120.00132 * 179.76091 * 4 3 2 6 6 C 1.38242 * 119.99757 * 0.51260 * 5 4 3 7 7 C 1.50697 * 119.99867 * 179.72172 * 6 5 4 8 8 C 1.53007 * 109.47219 * 324.74307 * 7 6 5 9 9 C 1.53000 * 109.47372 * 84.74412 * 7 6 5 10 10 N 1.46504 * 109.46854 * 204.74508 * 7 6 5 11 11 C 1.34777 * 119.99784 * 181.12287 * 10 7 6 12 12 O 1.21280 * 120.00044 * 0.02562 * 11 10 7 13 13 C 1.50699 * 119.99968 * 179.97438 * 11 10 7 14 14 C 1.53001 * 109.46938 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.46938 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00148 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00354 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99592 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00524 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46791 * 59.99691 * 19 17 15 21 21 H 1.48497 * 109.47388 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46818 * 300.00120 * 19 17 15 23 23 C 1.38228 * 119.99917 * 359.74034 * 6 5 4 24 24 C 1.38234 * 120.00124 * 90.00034 * 3 2 1 25 25 H 1.09006 * 109.46915 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46948 * 299.99435 * 1 2 3 27 27 H 1.08993 * 109.47376 * 59.99916 * 1 2 3 28 28 H 1.09000 * 109.46948 * 240.00565 * 2 1 3 29 29 H 1.09002 * 109.47450 * 119.99909 * 2 1 3 30 30 H 1.07999 * 119.99941 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.00336 * 180.22559 * 5 4 3 32 32 H 1.09000 * 109.46716 * 60.00254 * 8 7 6 33 33 H 1.08993 * 109.47083 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.46489 * 300.00236 * 8 7 6 35 35 H 1.08999 * 109.46995 * 59.99621 * 9 7 6 36 36 H 1.08993 * 109.47408 * 180.02562 * 9 7 6 37 37 H 1.09001 * 109.46858 * 299.99951 * 9 7 6 38 38 H 0.96988 * 120.00116 * 1.12049 * 10 7 6 39 39 H 1.08995 * 109.47245 * 300.00528 * 13 11 10 40 40 H 1.09001 * 109.47020 * 60.00550 * 13 11 10 41 41 H 1.08995 * 109.47579 * 300.00317 * 14 13 11 42 42 H 1.09003 * 109.47327 * 60.00395 * 14 13 11 43 43 H 0.96996 * 119.99719 * 180.02562 * 18 17 15 44 44 H 1.07998 * 120.00061 * 179.97438 * 23 6 5 45 45 H 1.07998 * 120.00011 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7241 3.3756 -1.1972 6 6 2.9545 4.0272 0.0000 7 6 3.4577 5.4477 0.0000 8 6 4.4132 5.6503 -1.1777 9 6 2.2740 6.4081 -0.1326 10 7 4.1654 5.7151 1.2546 11 6 4.6853 6.9364 1.4879 12 8 4.5669 7.8143 0.6595 13 6 5.4127 7.2117 2.7787 14 6 5.8988 8.6624 2.7908 15 6 6.6268 8.9374 4.0813 16 1 6.7326 8.1556 4.8188 17 6 7.1579 10.1871 4.3205 18 7 7.0296 11.1390 3.4220 19 14 8.0609 10.5279 5.9198 20 1 9.2265 9.6148 6.0343 21 1 8.5327 11.9359 5.9316 22 1 7.1420 10.3035 7.0645 23 6 2.7238 3.3757 1.1971 24 6 2.2627 2.0725 1.1971 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0926 1.5599 -2.1325 31 1 2.9048 3.8845 -2.1325 32 1 3.8866 5.4514 -2.1111 33 1 4.7775 6.6776 -1.1774 34 1 5.2564 4.9661 -1.0832 35 1 1.5933 6.2637 0.7064 36 1 2.6380 7.4355 -0.1330 37 1 1.7475 6.2091 -1.0660 38 1 4.2597 5.0132 1.9173 39 1 4.7373 7.0481 3.6184 40 1 6.2677 6.5409 2.8641 41 1 6.5741 8.8263 1.9511 42 1 5.0437 9.3329 2.7056 43 1 7.4035 12.0181 3.5901 44 1 2.9042 3.8846 2.1324 45 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291381375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:34 Heat of formation + Delta-G solvation = -55.512529 kcal Electronic energy + Delta-G solvation = -22572.986480 eV Core-core repulsion = 19360.567889 eV Total energy + Delta-G solvation = -3212.418591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55353 -40.12271 -37.43902 -35.53878 -34.48956 -33.45870 -32.43367 -31.55193 -29.61672 -28.27898 -27.69564 -25.24593 -24.12393 -23.29745 -22.37177 -21.19966 -20.44489 -18.96558 -18.16175 -17.12349 -16.58324 -16.47646 -16.36387 -16.05161 -15.69831 -14.95592 -14.91744 -14.71171 -14.44726 -14.35299 -14.26004 -14.19704 -13.95038 -13.39133 -13.19612 -13.13653 -12.98876 -12.77893 -12.58588 -12.50592 -12.34884 -12.25195 -12.04722 -11.87344 -11.65180 -11.62021 -11.52611 -11.29960 -10.55723 -10.46569 -10.12891 -9.81503 -9.41445 -8.17525 -6.31482 0.37660 0.50695 1.41663 1.46227 1.53932 1.76676 2.23559 2.44808 2.83081 3.15154 3.49972 3.85752 3.95395 4.02344 4.07686 4.13317 4.19674 4.36587 4.48919 4.53432 4.56279 4.58130 4.61359 4.69746 4.73169 4.76546 4.83620 4.88050 5.06103 5.10079 5.11525 5.13396 5.20203 5.25669 5.30512 5.41603 5.48596 5.51948 5.53154 5.65018 5.74989 5.76140 5.86544 6.10185 6.18723 6.65428 6.86910 7.37803 7.40542 8.94795 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.030258 B = 0.002819 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.160170 B = 9928.855033 C =10548.697482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.095 4.095 7 C 0.215 3.785 8 C -0.158 4.158 9 C -0.154 4.154 10 N -0.717 5.717 11 C 0.515 3.485 12 O -0.572 6.572 13 C -0.122 4.122 14 C 0.046 3.954 15 C -0.544 4.544 16 H 0.074 0.926 17 C -0.007 4.007 18 N -0.937 5.937 19 Si 0.973 3.027 20 H -0.263 1.263 21 H -0.287 1.287 22 H -0.262 1.262 23 C -0.124 4.124 24 C -0.118 4.118 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.410 0.590 39 H 0.101 0.899 40 H 0.100 0.900 41 H -0.018 1.018 42 H -0.017 1.017 43 H 0.263 0.737 44 H 0.128 0.872 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.656 -25.798 -7.396 29.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.088 4.088 4 C -0.136 4.136 5 C -0.131 4.131 6 C -0.095 4.095 7 C 0.129 3.871 8 C -0.216 4.216 9 C -0.212 4.212 10 N -0.372 5.372 11 C 0.303 3.697 12 O -0.450 6.450 13 C -0.161 4.161 14 C 0.008 3.992 15 C -0.582 4.582 16 H 0.092 0.908 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.797 3.203 20 H -0.187 1.187 21 H -0.213 1.213 22 H -0.187 1.187 23 C -0.142 4.142 24 C -0.136 4.136 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.159 0.841 31 H 0.152 0.848 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.248 0.752 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.001 0.999 42 H 0.001 0.999 43 H 0.071 0.929 44 H 0.146 0.854 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.706 -25.011 -8.022 29.178 hybrid contribution 0.609 0.746 0.827 1.269 sum -12.097 -24.265 -7.194 28.051 Atomic orbital electron populations 1.21739 0.94370 1.02344 1.01847 1.20588 0.96378 0.91411 1.03715 1.20228 0.98310 0.97270 0.93020 1.21258 0.99415 0.94361 0.98587 1.21170 0.99233 0.95179 0.97519 1.19739 1.01289 0.93708 0.94764 1.19069 0.91678 0.91839 0.84504 1.22221 0.99372 1.02164 0.97818 1.22151 0.96810 0.99709 1.02544 1.46250 1.57364 1.12867 1.20738 1.21185 0.77829 0.81745 0.88918 1.90603 1.59472 1.46508 1.48466 1.21651 1.00589 0.99717 0.94179 1.18647 0.94316 0.90918 0.95322 1.21690 1.35480 0.97474 1.03567 0.90780 1.26137 0.97298 0.96111 1.00913 1.70173 1.46777 1.03728 1.37006 0.85382 0.79009 0.77067 0.78836 1.18744 1.21305 1.18702 1.21089 1.00061 0.95528 0.97560 1.21224 0.99414 0.94308 0.98670 0.91218 0.93086 0.92895 0.90115 0.90288 0.84133 0.84770 0.89546 0.93296 0.92329 0.92568 0.92920 0.90258 0.75174 0.88073 0.88190 0.99921 0.99871 0.92874 0.85440 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 71.98 0.71 -0.67 16 2 C -0.08 -0.85 6.07 29.85 0.18 -0.67 16 3 C -0.09 -1.30 5.13 -19.86 -0.10 -1.40 16 4 C -0.12 -1.80 9.70 22.27 0.22 -1.59 16 5 C -0.11 -2.04 9.15 22.27 0.20 -1.83 16 6 C -0.09 -1.99 4.80 -19.87 -0.10 -2.08 16 7 C 0.21 5.62 0.89 2.86 0.00 5.62 16 8 C -0.16 -4.28 7.86 71.98 0.57 -3.71 16 9 C -0.15 -4.32 8.37 71.98 0.60 -3.72 16 10 N -0.72 -20.56 4.88 -426.31 -2.08 -22.64 16 11 C 0.51 20.09 7.25 87.66 0.64 20.72 16 12 O -0.57 -27.33 12.19 -3.03 -0.04 -27.37 16 13 C -0.12 -4.98 5.64 29.85 0.17 -4.81 16 14 C 0.05 2.57 4.26 29.85 0.13 2.70 16 15 C -0.54 -31.35 9.11 25.60 0.23 -31.12 16 16 H 0.07 3.89 7.74 -2.91 -0.02 3.86 16 17 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 18 N -0.94 -59.97 13.29 21.45 0.28 -59.69 16 19 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 C -0.12 -2.35 9.02 22.27 0.20 -2.15 16 24 C -0.12 -1.89 9.70 22.27 0.22 -1.67 16 25 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 29 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 30 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.13 2.10 6.33 -2.91 -0.02 2.08 16 32 H 0.09 1.84 6.52 -2.39 -0.02 1.83 16 33 H 0.05 1.70 6.25 -2.39 -0.01 1.68 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.87 6.09 -2.39 -0.01 1.86 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.41 9.29 6.40 -92.72 -0.59 8.70 16 39 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 40 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 41 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 42 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 43 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 44 H 0.13 2.20 6.42 -2.91 -0.02 2.18 16 45 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -74.91 361.19 4.90 -70.01 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.37 Total: 19.28 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 4.33 Total: -26.34 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -1.79 Total: -82.33 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.04 Total: -27.37 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -74.91 4.90 -70.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291381375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.501 kcal (2) G-P(sol) polarization free energy of solvation -74.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds