Wall clock time and date at job start Tue Mar 31 2020 06:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34771 * 119.99927 * 2 1 4 4 O 1.21293 * 120.00075 * 185.27713 * 3 2 1 5 5 C 1.50698 * 120.00401 * 5.27974 * 3 2 1 6 6 C 1.52996 * 109.47639 * 180.02562 * 5 3 2 7 7 C 1.50698 * 109.47639 * 180.02562 * 6 5 3 8 8 H 1.07998 * 119.99542 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00313 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00058 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00000 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47398 * 89.99958 * 11 9 7 13 13 H 1.48501 * 109.47281 * 210.00027 * 11 9 7 14 14 H 1.48506 * 109.47167 * 330.00083 * 11 9 7 15 15 C 1.39931 * 119.99865 * 180.02562 * 2 1 3 16 16 C 1.38873 * 120.06700 * 293.07865 * 15 2 1 17 17 C 1.38113 * 119.92342 * 180.25613 * 16 15 2 18 18 C 1.38288 * 120.07226 * 359.51238 * 17 16 15 19 19 C 1.50693 * 119.92852 * 180.25489 * 18 17 16 20 20 C 1.53003 * 109.47304 * 60.00416 * 19 18 17 21 21 C 1.53001 * 109.47301 * 180.02562 * 19 18 17 22 22 C 1.52998 * 109.47576 * 300.00030 * 19 18 17 23 23 C 1.38283 * 120.13855 * 0.23655 * 18 17 16 24 24 C 1.38108 * 120.07009 * 359.97438 * 23 18 17 25 25 H 1.09005 * 109.46918 * 269.99822 * 1 2 3 26 26 H 1.08995 * 109.47493 * 29.99875 * 1 2 3 27 27 H 1.08996 * 109.47281 * 150.00281 * 1 2 3 28 28 H 1.09000 * 109.46828 * 300.00139 * 5 3 2 29 29 H 1.09000 * 109.47370 * 59.99822 * 5 3 2 30 30 H 1.09001 * 109.46978 * 300.00459 * 6 5 3 31 31 H 1.09000 * 109.46965 * 59.99476 * 6 5 3 32 32 H 0.97006 * 120.00075 * 179.97438 * 10 9 7 33 33 H 1.08000 * 120.04102 * 0.05058 * 16 15 2 34 34 H 1.08003 * 119.96412 * 179.79134 * 17 16 15 35 35 H 1.09000 * 109.47177 * 59.99119 * 20 19 18 36 36 H 1.08999 * 109.47662 * 179.97438 * 20 19 18 37 37 H 1.09008 * 109.46815 * 299.99833 * 20 19 18 38 38 H 1.09000 * 109.47177 * 59.99557 * 21 19 18 39 39 H 1.08994 * 109.47768 * 180.02562 * 21 19 18 40 40 H 1.09004 * 109.47229 * 300.00546 * 21 19 18 41 41 H 1.09008 * 109.46870 * 59.99967 * 22 19 18 42 42 H 1.08999 * 109.47207 * 179.97438 * 22 19 18 43 43 H 1.08994 * 109.46994 * 300.00298 * 22 19 18 44 44 H 1.07997 * 119.96330 * 180.02562 * 23 18 17 45 45 H 1.08003 * 120.03145 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3479 1.1694 -0.0966 5 6 1.3902 2.4695 0.1201 6 6 2.3833 3.6331 0.0937 7 6 1.6347 4.9354 0.2144 8 1 0.5582 4.9334 0.3009 9 6 2.3240 6.1295 0.2135 10 7 1.6707 7.2659 0.3193 11 14 4.1859 6.1329 0.0633 12 1 4.5668 6.1977 -1.3705 13 1 4.7379 7.3132 0.7758 14 1 4.7335 4.8906 0.6652 15 6 2.1646 -1.2119 -0.0005 16 6 2.1045 -2.0505 1.1048 17 6 2.8004 -3.2434 1.1031 18 6 3.5484 -3.6078 -0.0014 19 6 4.3019 -4.9129 -0.0020 20 6 3.3173 -6.0703 0.1771 21 6 5.0424 -5.0737 -1.3311 22 6 5.3113 -4.9195 1.1477 23 6 3.6061 -2.7773 -1.1056 24 6 2.9159 -1.5811 -1.1085 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 0.6947 2.5670 -0.7135 29 1 0.8365 2.4852 1.0589 30 1 3.0791 3.5358 0.9271 31 1 2.9366 3.6172 -0.8453 32 1 2.1557 8.1060 0.3191 33 1 1.5168 -1.7686 1.9659 34 1 2.7568 -3.8945 1.9637 35 1 2.5981 -6.0655 -0.6420 36 1 3.8622 -7.0143 0.1762 37 1 2.7901 -5.9556 1.1242 38 1 5.7438 -4.2491 -1.4583 39 1 5.5871 -6.0178 -1.3317 40 1 4.3236 -5.0688 -2.1505 41 1 4.7840 -4.8048 2.0949 42 1 5.8560 -5.8637 1.1476 43 1 6.0127 -4.0950 1.0201 44 1 4.1907 -3.0649 -1.9669 45 1 2.9610 -0.9331 -1.9714 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291413100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:01 Heat of formation + Delta-G solvation = -25.654098 kcal Electronic energy + Delta-G solvation = -22687.718140 eV Core-core repulsion = 19476.594308 eV Total energy + Delta-G solvation = -3211.123833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50050 -39.18842 -36.70275 -34.77347 -33.51761 -31.38206 -31.20855 -29.41198 -27.62815 -27.50776 -26.70393 -26.03567 -23.15057 -22.37792 -21.06792 -19.48592 -18.89505 -17.38183 -17.00777 -16.04045 -15.90407 -15.70765 -14.80221 -14.62516 -14.51285 -14.08030 -13.87821 -13.57725 -13.49129 -13.22859 -12.89876 -12.77736 -12.56802 -12.42744 -12.35082 -12.17911 -12.08805 -11.94395 -11.62099 -11.38212 -11.19269 -10.97548 -10.90614 -10.72070 -10.17376 -10.04228 -9.79031 -9.32943 -9.18835 -9.08645 -8.94682 -8.51376 -8.21993 -6.03559 -4.02403 1.23335 1.38374 3.01371 3.13543 3.37845 3.44480 3.55845 3.67388 4.37242 4.50135 4.50759 4.73963 4.92644 4.97428 5.03863 5.08339 5.25382 5.29628 5.31902 5.34033 5.34838 5.41415 5.49084 5.54018 5.60187 5.62528 5.66039 5.68720 5.71100 5.80490 5.98350 5.99285 6.02611 6.04488 6.07639 6.29623 6.49498 6.55465 6.63260 6.66729 7.12904 7.35392 7.41906 7.50920 7.78080 8.47580 8.58345 8.99101 9.59535 11.09187 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027761 B = 0.003151 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.381888 B = 8885.125363 C = 9444.010237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.590 5.590 3 C 0.512 3.488 4 O -0.525 6.525 5 C -0.118 4.118 6 C 0.001 3.999 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.069 3.931 10 N -0.903 5.903 11 Si 0.877 3.123 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.261 1.261 15 C 0.146 3.854 16 C -0.121 4.121 17 C -0.107 4.107 18 C -0.078 4.078 19 C -0.028 4.028 20 C -0.137 4.137 21 C -0.145 4.145 22 C -0.139 4.139 23 C -0.111 4.111 24 C -0.103 4.103 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.023 0.977 31 H 0.019 0.981 32 H 0.263 0.737 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.127 0.873 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 -27.998 -0.801 28.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.322 5.322 3 C 0.303 3.697 4 O -0.399 6.399 5 C -0.158 4.158 6 C -0.037 4.037 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.132 4.132 10 N -0.542 5.542 11 Si 0.704 3.296 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.185 1.185 15 C 0.055 3.945 16 C -0.141 4.141 17 C -0.126 4.126 18 C -0.079 4.079 19 C -0.028 4.028 20 C -0.194 4.194 21 C -0.202 4.202 22 C -0.196 4.196 23 C -0.130 4.130 24 C -0.123 4.123 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.145 0.855 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.197 -27.740 -0.843 27.778 hybrid contribution 0.773 0.246 -0.043 0.812 sum 1.970 -27.494 -0.885 27.579 Atomic orbital electron populations 1.21841 0.78418 1.03506 1.02194 1.45707 1.06999 1.04021 1.75475 1.21752 0.88384 0.85223 0.74333 1.90677 1.14679 1.87055 1.47454 1.21707 1.00276 0.90518 1.03257 1.19390 0.94489 0.92162 0.97658 1.21090 0.95324 0.88933 1.50905 0.90892 1.24961 0.98449 0.95451 0.94329 1.69909 1.35938 0.97538 1.50812 0.86807 0.86194 0.77936 0.78698 1.20222 1.21406 1.18540 1.17644 0.96305 0.86888 0.93642 1.21189 1.00739 0.95052 0.97096 1.20765 0.97432 0.96362 0.98044 1.19782 0.98001 0.95850 0.94237 1.19478 0.94805 0.92189 0.96374 1.21886 0.98663 0.96895 1.01997 1.21970 1.00171 1.01821 0.96234 1.21896 0.98533 1.01824 0.97375 1.21033 0.99585 0.93864 0.98506 1.21270 0.97271 0.96125 0.97613 0.92392 0.89857 0.91318 0.89445 0.89380 0.95816 0.96268 0.92702 0.85943 0.86039 0.92499 0.92455 0.92439 0.92127 0.92446 0.92242 0.92424 0.92443 0.92336 0.85495 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.10 59.84 0.60 1.51 16 2 N -0.59 -8.95 2.93 -120.83 -0.35 -9.30 16 3 C 0.51 9.85 7.55 -10.99 -0.08 9.77 16 4 O -0.52 -12.15 15.54 5.55 0.09 -12.06 16 5 C -0.12 -2.32 4.32 -27.89 -0.12 -2.44 16 6 C 0.00 0.02 3.33 -27.89 -0.09 -0.07 16 7 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 11 Si 0.88 22.77 27.47 -169.99 -4.67 18.10 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 15 C 0.15 2.13 4.83 -83.69 -0.40 1.73 16 16 C -0.12 -1.53 9.85 -39.39 -0.39 -1.92 16 17 C -0.11 -1.18 8.70 -39.61 -0.34 -1.52 16 18 C -0.08 -0.84 4.76 -104.59 -0.50 -1.34 16 19 C -0.03 -0.24 0.85 -155.66 -0.13 -0.37 16 20 C -0.14 -0.96 8.29 37.16 0.31 -0.66 16 21 C -0.14 -1.09 7.13 37.16 0.26 -0.82 16 22 C -0.14 -1.11 8.28 37.16 0.31 -0.80 16 23 C -0.11 -1.33 8.97 -39.61 -0.36 -1.68 16 24 C -0.10 -1.47 9.31 -39.40 -0.37 -1.83 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.87 6.48 -51.93 -0.34 0.53 16 27 H 0.07 0.62 8.05 -51.93 -0.42 0.21 16 28 H 0.09 1.56 7.24 -51.93 -0.38 1.19 16 29 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 30 H 0.02 0.63 7.16 -51.93 -0.37 0.25 16 31 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.12 1.07 7.09 -52.48 -0.37 0.70 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.39 7.38 -51.92 -0.38 0.01 16 38 H 0.06 0.48 7.51 -51.93 -0.39 0.09 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 41 H 0.06 0.45 7.38 -51.92 -0.38 0.06 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.13 1.28 5.88 -52.49 -0.31 0.97 16 45 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -34.19 360.67 -7.97 -42.16 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -7.51 Total: -3.20 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -1.73 Total: -13.86 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.42 Total: -36.58 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.67 Total: 18.10 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.19 -7.97 -42.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291413100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.507 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds