Wall clock time and date at job start Tue Mar 31 2020 06:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34771 * 119.99927 * 2 1 4 4 O 1.21293 * 120.00075 * 185.27713 * 3 2 1 5 5 C 1.50698 * 120.00401 * 5.27974 * 3 2 1 6 6 C 1.52996 * 109.47639 * 180.02562 * 5 3 2 7 7 C 1.50698 * 109.47639 * 180.02562 * 6 5 3 8 8 H 1.07998 * 119.99542 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00313 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00058 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00000 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47398 * 89.99958 * 11 9 7 13 13 H 1.48501 * 109.47281 * 210.00027 * 11 9 7 14 14 H 1.48506 * 109.47167 * 330.00083 * 11 9 7 15 15 C 1.39931 * 119.99865 * 180.02562 * 2 1 3 16 16 C 1.38873 * 120.06700 * 293.07865 * 15 2 1 17 17 C 1.38113 * 119.92342 * 180.25613 * 16 15 2 18 18 C 1.38288 * 120.07226 * 359.51238 * 17 16 15 19 19 C 1.50693 * 119.92852 * 180.25489 * 18 17 16 20 20 C 1.53003 * 109.47304 * 60.00416 * 19 18 17 21 21 C 1.53001 * 109.47301 * 180.02562 * 19 18 17 22 22 C 1.52998 * 109.47576 * 300.00030 * 19 18 17 23 23 C 1.38283 * 120.13855 * 0.23655 * 18 17 16 24 24 C 1.38108 * 120.07009 * 359.97438 * 23 18 17 25 25 H 1.09005 * 109.46918 * 269.99822 * 1 2 3 26 26 H 1.08995 * 109.47493 * 29.99875 * 1 2 3 27 27 H 1.08996 * 109.47281 * 150.00281 * 1 2 3 28 28 H 1.09000 * 109.46828 * 300.00139 * 5 3 2 29 29 H 1.09000 * 109.47370 * 59.99822 * 5 3 2 30 30 H 1.09001 * 109.46978 * 300.00459 * 6 5 3 31 31 H 1.09000 * 109.46965 * 59.99476 * 6 5 3 32 32 H 0.97006 * 120.00075 * 179.97438 * 10 9 7 33 33 H 1.08000 * 120.04102 * 0.05058 * 16 15 2 34 34 H 1.08003 * 119.96412 * 179.79134 * 17 16 15 35 35 H 1.09000 * 109.47177 * 59.99119 * 20 19 18 36 36 H 1.08999 * 109.47662 * 179.97438 * 20 19 18 37 37 H 1.09008 * 109.46815 * 299.99833 * 20 19 18 38 38 H 1.09000 * 109.47177 * 59.99557 * 21 19 18 39 39 H 1.08994 * 109.47768 * 180.02562 * 21 19 18 40 40 H 1.09004 * 109.47229 * 300.00546 * 21 19 18 41 41 H 1.09008 * 109.46870 * 59.99967 * 22 19 18 42 42 H 1.08999 * 109.47207 * 179.97438 * 22 19 18 43 43 H 1.08994 * 109.46994 * 300.00298 * 22 19 18 44 44 H 1.07997 * 119.96330 * 180.02562 * 23 18 17 45 45 H 1.08003 * 120.03145 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3479 1.1694 -0.0966 5 6 1.3902 2.4695 0.1201 6 6 2.3833 3.6331 0.0937 7 6 1.6347 4.9354 0.2144 8 1 0.5582 4.9334 0.3009 9 6 2.3240 6.1295 0.2135 10 7 1.6707 7.2659 0.3193 11 14 4.1859 6.1329 0.0633 12 1 4.5668 6.1977 -1.3705 13 1 4.7379 7.3132 0.7758 14 1 4.7335 4.8906 0.6652 15 6 2.1646 -1.2119 -0.0005 16 6 2.1045 -2.0505 1.1048 17 6 2.8004 -3.2434 1.1031 18 6 3.5484 -3.6078 -0.0014 19 6 4.3019 -4.9129 -0.0020 20 6 3.3173 -6.0703 0.1771 21 6 5.0424 -5.0737 -1.3311 22 6 5.3113 -4.9195 1.1477 23 6 3.6061 -2.7773 -1.1056 24 6 2.9159 -1.5811 -1.1085 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 0.6947 2.5670 -0.7135 29 1 0.8365 2.4852 1.0589 30 1 3.0791 3.5358 0.9271 31 1 2.9366 3.6172 -0.8453 32 1 2.1557 8.1060 0.3191 33 1 1.5168 -1.7686 1.9659 34 1 2.7568 -3.8945 1.9637 35 1 2.5981 -6.0655 -0.6420 36 1 3.8622 -7.0143 0.1762 37 1 2.7901 -5.9556 1.1242 38 1 5.7438 -4.2491 -1.4583 39 1 5.5871 -6.0178 -1.3317 40 1 4.3236 -5.0688 -2.1505 41 1 4.7840 -4.8048 2.0949 42 1 5.8560 -5.8637 1.1476 43 1 6.0127 -4.0950 1.0201 44 1 4.1907 -3.0649 -1.9669 45 1 2.9610 -0.9331 -1.9714 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291413100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:00 Heat of formation + Delta-G solvation = -44.499575 kcal Electronic energy + Delta-G solvation = -22688.535342 eV Core-core repulsion = 19476.594308 eV Total energy + Delta-G solvation = -3211.941034 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.63830 -40.28574 -37.73839 -35.87182 -35.56954 -33.35765 -32.13501 -30.48601 -28.30523 -28.14173 -28.06750 -27.40266 -24.45725 -23.31925 -22.68847 -20.57803 -20.01396 -19.18420 -18.37524 -17.47741 -17.12405 -16.65441 -16.24773 -15.95674 -15.61695 -15.13552 -15.00959 -14.74131 -14.63641 -14.51845 -14.24040 -13.87867 -13.69603 -13.62471 -13.47160 -13.18366 -12.92962 -12.88774 -12.75805 -12.52349 -12.43883 -12.12523 -12.00068 -11.82134 -11.78900 -11.64369 -11.43466 -11.41783 -10.85247 -10.79844 -10.19538 -9.90387 -9.26999 -8.33251 -6.35977 0.25843 0.43024 1.30937 1.33096 1.48242 1.54992 1.94803 2.33134 2.72877 3.02318 3.66291 3.75524 3.80067 4.02953 4.13591 4.15030 4.20687 4.31938 4.37159 4.40178 4.44367 4.53711 4.67178 4.71175 4.80612 4.81766 4.83077 4.92168 4.97246 5.00385 5.04300 5.06031 5.08786 5.22691 5.29809 5.35765 5.39641 5.46058 5.47454 5.50407 5.58024 5.66313 5.69460 6.08876 6.20033 6.25511 6.69950 7.15155 7.29427 8.82273 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027761 B = 0.003151 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.381888 B = 8885.125363 C = 9444.010237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.578 5.578 3 C 0.513 3.487 4 O -0.575 6.575 5 C -0.110 4.110 6 C 0.006 3.994 7 C -0.528 4.528 8 H 0.053 0.947 9 C 0.016 3.984 10 N -0.941 5.941 11 Si 0.935 3.065 12 H -0.268 1.268 13 H -0.276 1.276 14 H -0.265 1.265 15 C 0.116 3.884 16 C -0.124 4.124 17 C -0.105 4.105 18 C -0.074 4.074 19 C -0.028 4.028 20 C -0.135 4.135 21 C -0.146 4.146 22 C -0.139 4.139 23 C -0.116 4.116 24 C -0.124 4.124 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.268 0.732 33 H 0.135 0.865 34 H 0.148 0.852 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.141 0.859 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 -30.749 -0.295 30.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.308 5.308 3 C 0.304 3.696 4 O -0.453 6.453 5 C -0.149 4.149 6 C -0.032 4.032 7 C -0.566 4.566 8 H 0.072 0.928 9 C -0.182 4.182 10 N -0.582 5.582 11 Si 0.760 3.240 12 H -0.193 1.193 13 H -0.202 1.202 14 H -0.189 1.189 15 C 0.026 3.974 16 C -0.144 4.144 17 C -0.123 4.123 18 C -0.074 4.074 19 C -0.028 4.028 20 C -0.192 4.192 21 C -0.203 4.203 22 C -0.196 4.196 23 C -0.135 4.135 24 C -0.143 4.143 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.077 0.923 33 H 0.153 0.847 34 H 0.166 0.834 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.158 0.842 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.305 -30.527 -0.339 30.557 hybrid contribution 0.652 0.995 -0.197 1.205 sum 1.957 -29.533 -0.536 29.602 Atomic orbital electron populations 1.22155 0.75820 1.04844 1.03879 1.45600 1.08553 1.03164 1.73489 1.21514 0.87668 0.86193 0.74242 1.90649 1.16552 1.87836 1.50261 1.21521 0.99198 0.89182 1.05009 1.19226 0.94989 0.92791 0.96220 1.21387 0.94780 0.90510 1.49876 0.92828 1.25757 1.02824 0.95288 0.94335 1.70011 1.37739 0.98238 1.52200 0.85874 0.81057 0.77961 0.79089 1.19348 1.20172 1.18930 1.17876 0.97690 0.87050 0.94815 1.21358 1.01051 0.95267 0.96711 1.21085 0.96408 0.96000 0.98838 1.20145 0.97257 0.96536 0.93497 1.19554 0.95024 0.91278 0.96968 1.21871 0.98376 0.96807 1.02126 1.21982 1.00116 1.02291 0.95907 1.21905 0.98277 1.02168 0.97273 1.21235 0.99298 0.93278 0.99641 1.21298 0.98468 0.97097 0.97475 0.90460 0.89402 0.89207 0.87556 0.87721 0.97423 0.97439 0.92321 0.84694 0.83443 0.92789 0.90986 0.91973 0.93021 0.90930 0.92092 0.92069 0.90767 0.93806 0.84161 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.46 10.10 127.77 1.29 2.75 16 2 N -0.58 -17.08 2.93 -654.58 -1.92 -19.00 16 3 C 0.51 19.73 7.55 87.66 0.66 20.39 16 4 O -0.57 -27.18 15.54 -3.07 -0.05 -27.23 16 5 C -0.11 -4.27 4.32 29.85 0.13 -4.14 16 6 C 0.01 0.29 3.33 29.85 0.10 0.39 16 7 C -0.53 -30.64 9.66 25.60 0.25 -30.39 16 8 H 0.05 3.24 7.99 -2.91 -0.02 3.22 16 9 C 0.02 0.95 5.47 84.65 0.46 1.41 16 10 N -0.94 -59.10 13.96 21.44 0.30 -58.80 16 11 Si 0.94 47.41 27.47 68.60 1.88 49.29 16 12 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 14 H -0.26 -13.49 6.54 99.48 0.65 -12.84 16 15 C 0.12 3.32 4.83 38.15 0.18 3.50 16 16 C -0.12 -2.93 9.85 22.39 0.22 -2.71 16 17 C -0.11 -2.06 8.70 22.25 0.19 -1.86 16 18 C -0.07 -1.46 4.76 -19.84 -0.09 -1.56 16 19 C -0.03 -0.40 0.85 -52.93 -0.05 -0.44 16 20 C -0.13 -1.47 8.29 71.98 0.60 -0.87 16 21 C -0.15 -1.89 7.13 71.98 0.51 -1.38 16 22 C -0.14 -1.87 8.28 71.98 0.60 -1.27 16 23 C -0.12 -2.70 8.97 22.25 0.20 -2.50 16 24 C -0.12 -3.55 9.31 22.39 0.21 -3.35 16 25 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.09 1.67 6.48 -2.39 -0.02 1.65 16 27 H 0.09 1.43 8.05 -2.39 -0.02 1.41 16 28 H 0.11 3.71 7.24 -2.39 -0.02 3.69 16 29 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 30 H 0.01 0.40 7.16 -2.39 -0.02 0.38 16 31 H 0.01 0.38 7.53 -2.39 -0.02 0.36 16 32 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 33 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 34 H 0.15 2.09 7.09 -2.91 -0.02 2.07 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.06 0.63 7.38 -2.38 -0.02 0.61 16 38 H 0.05 0.76 7.51 -2.39 -0.02 0.74 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 0.77 7.51 -2.38 -0.02 0.75 16 41 H 0.06 0.77 7.38 -2.38 -0.02 0.76 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.14 2.75 5.88 -2.91 -0.02 2.73 16 45 H 0.10 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -74.75 360.67 6.58 -68.18 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.89 Total: 9.58 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 5.46 Total: -22.02 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -1.62 Total: -77.80 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.05 Total: -27.23 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.88 Total: 49.29 kcal Total: -74.75 6.58 -68.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291413100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.679 kcal (2) G-P(sol) polarization free energy of solvation -74.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds