Wall clock time and date at job start Tue Mar 31 2020 06:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47132 * 2 1 4 4 C 1.53000 * 109.46929 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.46951 * 60.00389 * 4 2 1 6 6 H 1.07998 * 119.99966 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99697 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99696 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 120.00231 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46899 * 90.00199 * 9 7 5 11 11 H 1.48496 * 109.47056 * 210.00236 * 9 7 5 12 12 H 1.48503 * 109.46917 * 330.00389 * 9 7 5 13 13 C 1.53000 * 109.46881 * 119.99863 * 2 1 3 14 14 N 1.46903 * 109.47260 * 299.99802 * 13 2 1 15 15 C 1.47958 * 110.99929 * 190.00332 * 14 13 2 16 16 C 1.53938 * 86.17907 * 222.41728 * 15 14 13 17 17 O 1.42896 * 113.73391 * 269.25619 * 16 15 14 18 18 C 1.50706 * 113.73108 * 138.07833 * 16 15 14 19 19 C 1.38233 * 120.00109 * 329.72557 * 18 16 15 20 20 C 1.38239 * 119.99759 * 179.74218 * 19 18 16 21 21 C 1.38234 * 119.99962 * 0.55517 * 20 19 18 22 22 C 1.38238 * 120.00082 * 359.69846 * 21 20 19 23 23 C 1.38235 * 120.00108 * 0.02562 * 22 21 20 24 24 C 1.47954 * 110.99860 * 90.64518 * 14 13 2 25 25 H 1.09004 * 109.47154 * 299.99957 * 1 2 3 26 26 H 1.08998 * 109.46977 * 60.00226 * 1 2 3 27 27 H 1.09001 * 109.46964 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46632 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46634 * 299.99923 * 3 2 1 30 30 H 1.08995 * 109.47042 * 60.00181 * 3 2 1 31 31 H 1.09004 * 109.46627 * 179.97438 * 4 2 1 32 32 H 1.08997 * 109.47097 * 300.00145 * 4 2 1 33 33 H 0.97005 * 119.99891 * 179.97438 * 8 7 5 34 34 H 1.09008 * 109.47214 * 179.97438 * 13 2 1 35 35 H 1.09001 * 109.47223 * 60.00279 * 13 2 1 36 36 H 1.09005 * 113.76092 * 108.10171 * 15 14 13 37 37 H 1.08996 * 113.86318 * 336.74812 * 15 14 13 38 38 H 0.96701 * 114.00145 * 178.10181 * 17 16 15 39 39 H 1.08004 * 119.99934 * 0.02562 * 19 18 16 40 40 H 1.07999 * 119.99953 * 180.27297 * 20 19 18 41 41 H 1.08001 * 120.00280 * 179.72089 * 21 20 19 42 42 H 1.08000 * 120.00578 * 179.97438 * 22 21 20 43 43 H 1.07999 * 120.00165 * 179.97438 * 23 22 21 44 44 H 1.09005 * 113.76169 * 23.26159 * 24 14 13 45 45 H 1.09006 * 113.75880 * 251.90095 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8703 -0.4824 -3.7319 8 7 1.4316 0.1373 -4.8057 9 14 2.9442 -2.0013 -3.9033 10 1 2.0855 -3.2120 -3.9481 11 1 3.7357 -1.9091 -5.1563 12 1 3.8650 -2.0901 -2.7415 13 6 2.0400 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.2107 -0.5471 3.6670 16 6 0.8176 -0.4951 4.3198 17 8 0.5349 0.7435 4.9740 18 6 0.5029 -1.6960 5.1742 19 6 1.0503 -2.9270 4.8647 20 6 0.7658 -4.0274 5.6516 21 6 -0.0752 -3.8991 6.7411 22 6 -0.6268 -2.6692 7.0475 23 6 -0.3378 -1.5676 6.2640 24 6 0.2532 -0.5865 2.8906 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6768 1.9563 0.8900 31 1 3.1301 -0.7209 -1.2494 32 1 1.6766 -1.7490 -1.2492 33 1 1.6659 -0.1941 -5.6867 34 1 3.1301 -0.7217 1.2491 35 1 1.6767 -1.7489 1.2493 36 1 2.9279 0.1462 4.1067 37 1 2.6072 -1.5565 3.5581 38 1 -0.3503 0.7911 5.3605 39 1 1.7039 -3.0281 4.0109 40 1 1.1970 -4.9882 5.4124 41 1 -0.3010 -4.7598 7.3533 42 1 -1.2842 -2.5690 7.8985 43 1 -0.7691 -0.6067 6.5031 44 1 0.0762 -1.6076 2.5527 45 1 -0.5939 0.0753 2.7098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291565150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:03 Heat of formation + Delta-G solvation = 10.191423 kcal Electronic energy + Delta-G solvation = -23389.553149 eV Core-core repulsion = 20179.983695 eV Total energy + Delta-G solvation = -3209.569454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.00935 -38.82286 -36.85073 -35.20588 -32.33888 -31.55274 -31.13419 -28.52764 -27.49145 -26.68488 -25.68810 -24.60751 -22.95740 -22.58490 -21.27343 -19.88732 -18.23435 -17.73818 -16.73019 -16.43109 -15.82270 -15.70243 -14.95413 -14.79301 -14.47191 -14.09391 -13.80811 -13.65725 -13.43272 -13.06420 -12.88599 -12.53152 -12.45847 -12.34685 -12.08200 -11.89161 -11.53867 -11.36914 -11.03288 -10.92420 -10.80741 -10.65183 -10.43453 -10.32060 -10.18796 -9.76999 -9.63744 -9.22706 -9.18350 -8.95388 -8.90311 -8.51015 -8.47895 -5.97964 -3.93828 1.00509 1.09400 3.32461 3.40330 3.40685 3.43667 3.73953 4.10787 4.30093 4.40356 4.49620 4.67583 4.67884 4.82276 5.02974 5.15356 5.24610 5.28109 5.34924 5.41731 5.55073 5.62489 5.63777 5.71804 5.74822 5.87415 5.95473 6.13673 6.14844 6.15989 6.21331 6.26022 6.49532 6.55874 6.66947 6.71198 6.74658 6.86030 7.11510 7.16673 7.21587 7.30342 7.39394 7.43742 7.51889 7.87677 8.62687 9.08571 9.65174 11.15273 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025068 B = 0.003602 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.702088 B = 7772.001811 C = 8379.053660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.041 4.041 3 C -0.118 4.118 4 C -0.005 4.005 5 C -0.505 4.505 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.026 3.974 14 N -0.455 5.455 15 C 0.016 3.984 16 C 0.140 3.860 17 O -0.523 6.523 18 C -0.100 4.100 19 C -0.111 4.111 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.114 4.114 24 C -0.008 4.008 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.013 0.987 32 H 0.007 0.993 33 H 0.261 0.739 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.374 0.626 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.076 0.924 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 -6.465 24.456 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.041 4.041 3 C -0.176 4.176 4 C -0.043 4.043 5 C -0.543 4.543 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.102 4.102 14 N -0.177 5.177 15 C -0.113 4.113 16 C 0.097 3.903 17 O -0.328 6.328 18 C -0.101 4.101 19 C -0.129 4.129 20 C -0.133 4.133 21 C -0.141 4.141 22 C -0.135 4.135 23 C -0.132 4.132 24 C -0.137 4.137 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.032 0.968 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.222 0.778 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.094 0.906 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.333 -5.631 23.868 24.634 hybrid contribution 0.004 -2.031 -0.050 2.031 sum -2.330 -7.662 23.818 25.128 Atomic orbital electron populations 1.21844 0.95497 1.00155 1.01174 1.20305 0.95282 0.95979 0.92545 1.21612 0.99401 0.95650 1.00892 1.19647 0.95933 0.95193 0.93501 1.21143 1.31350 1.13167 0.88659 0.90405 1.25020 0.95824 0.96748 0.96033 1.69913 1.46216 1.40650 0.97807 0.86851 0.81312 0.84021 0.77494 1.20540 1.21547 1.19174 1.22912 0.99946 0.95513 0.91812 1.68582 1.01906 1.46589 1.00623 1.24181 0.95207 1.00369 0.91508 1.21504 0.97368 0.81805 0.89596 1.86606 1.37460 1.33949 1.74822 1.20365 0.97899 0.95314 0.96539 1.21040 0.99810 0.92135 0.99904 1.21169 0.98249 0.98621 0.95298 1.21187 0.97691 0.97607 0.97620 1.21125 0.99918 0.92826 0.99603 1.20906 0.98292 0.98910 0.95097 1.24782 0.96171 1.00022 0.92712 0.93919 0.91578 0.94547 0.94446 0.92124 0.93453 0.96827 0.97518 0.92918 0.91336 0.94444 0.88579 0.90162 0.77759 0.85794 0.85838 0.86049 0.85944 0.86010 0.90593 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 7.35 37.16 0.27 -2.20 16 2 C -0.04 -0.81 0.60 -154.50 -0.09 -0.90 16 3 C -0.12 -2.37 8.06 37.16 0.30 -2.07 16 4 C 0.00 -0.12 3.11 -27.88 -0.09 -0.20 16 5 C -0.51 -14.12 8.20 -34.44 -0.28 -14.40 16 6 H 0.08 2.33 5.92 -52.49 -0.31 2.02 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 8 N -0.91 -28.03 13.96 55.43 0.77 -27.25 16 9 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.03 0.43 3.91 -3.82 -0.01 0.42 16 14 N -0.46 -6.69 5.17 -238.26 -1.23 -7.93 16 15 C 0.02 0.20 7.14 -2.77 -0.02 0.18 16 16 C 0.14 1.59 1.79 -90.84 -0.16 1.42 16 17 O -0.52 -6.00 13.24 -35.23 -0.47 -6.47 16 18 C -0.10 -1.02 5.27 -104.62 -0.55 -1.57 16 19 C -0.11 -1.10 8.96 -39.58 -0.35 -1.45 16 20 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 21 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 22 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 23 C -0.11 -1.00 9.37 -39.58 -0.37 -1.37 16 24 C -0.01 -0.10 5.49 -2.77 -0.02 -0.12 16 25 H 0.04 0.73 5.61 -51.93 -0.29 0.43 16 26 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.34 6.62 -51.93 -0.34 1.00 16 30 H 0.05 0.88 7.60 -51.93 -0.39 0.49 16 31 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 32 H 0.01 0.16 7.57 -51.93 -0.39 -0.24 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.07 1.13 8.08 -51.92 -0.42 0.71 16 35 H 0.04 0.59 7.38 -51.93 -0.38 0.21 16 36 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.08 0.88 5.79 -51.93 -0.30 0.58 16 38 H 0.37 2.79 7.28 45.56 0.33 3.12 16 39 H 0.12 1.17 6.27 -52.48 -0.33 0.84 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.81 6.40 -52.49 -0.34 0.48 16 44 H 0.08 0.96 7.29 -51.93 -0.38 0.58 16 45 H 0.10 1.24 7.00 -51.93 -0.36 0.88 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -32.04 344.99 -9.40 -41.44 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.33 Total: 2.40 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -2.67 Total: -24.63 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.46 Total: -35.18 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.47 Total: -6.47 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.04 -9.40 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291565150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.632 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds