Wall clock time and date at job start Tue Mar 31 2020 06:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47132 * 2 1 4 4 C 1.53000 * 109.46929 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.46951 * 60.00389 * 4 2 1 6 6 H 1.07998 * 119.99966 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99697 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99696 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 120.00231 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46899 * 90.00199 * 9 7 5 11 11 H 1.48496 * 109.47056 * 210.00236 * 9 7 5 12 12 H 1.48503 * 109.46917 * 330.00389 * 9 7 5 13 13 C 1.53000 * 109.46881 * 119.99863 * 2 1 3 14 14 N 1.46903 * 109.47260 * 299.99802 * 13 2 1 15 15 C 1.47958 * 110.99929 * 190.00332 * 14 13 2 16 16 C 1.53938 * 86.17907 * 222.41728 * 15 14 13 17 17 O 1.42896 * 113.73391 * 269.25619 * 16 15 14 18 18 C 1.50706 * 113.73108 * 138.07833 * 16 15 14 19 19 C 1.38233 * 120.00109 * 329.72557 * 18 16 15 20 20 C 1.38239 * 119.99759 * 179.74218 * 19 18 16 21 21 C 1.38234 * 119.99962 * 0.55517 * 20 19 18 22 22 C 1.38238 * 120.00082 * 359.69846 * 21 20 19 23 23 C 1.38235 * 120.00108 * 0.02562 * 22 21 20 24 24 C 1.47954 * 110.99860 * 90.64518 * 14 13 2 25 25 H 1.09004 * 109.47154 * 299.99957 * 1 2 3 26 26 H 1.08998 * 109.46977 * 60.00226 * 1 2 3 27 27 H 1.09001 * 109.46964 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46632 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46634 * 299.99923 * 3 2 1 30 30 H 1.08995 * 109.47042 * 60.00181 * 3 2 1 31 31 H 1.09004 * 109.46627 * 179.97438 * 4 2 1 32 32 H 1.08997 * 109.47097 * 300.00145 * 4 2 1 33 33 H 0.97005 * 119.99891 * 179.97438 * 8 7 5 34 34 H 1.09008 * 109.47214 * 179.97438 * 13 2 1 35 35 H 1.09001 * 109.47223 * 60.00279 * 13 2 1 36 36 H 1.09005 * 113.76092 * 108.10171 * 15 14 13 37 37 H 1.08996 * 113.86318 * 336.74812 * 15 14 13 38 38 H 0.96701 * 114.00145 * 178.10181 * 17 16 15 39 39 H 1.08004 * 119.99934 * 0.02562 * 19 18 16 40 40 H 1.07999 * 119.99953 * 180.27297 * 20 19 18 41 41 H 1.08001 * 120.00280 * 179.72089 * 21 20 19 42 42 H 1.08000 * 120.00578 * 179.97438 * 22 21 20 43 43 H 1.07999 * 120.00165 * 179.97438 * 23 22 21 44 44 H 1.09005 * 113.76169 * 23.26159 * 24 14 13 45 45 H 1.09006 * 113.75880 * 251.90095 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8703 -0.4824 -3.7319 8 7 1.4316 0.1373 -4.8057 9 14 2.9442 -2.0013 -3.9033 10 1 2.0855 -3.2120 -3.9481 11 1 3.7357 -1.9091 -5.1563 12 1 3.8650 -2.0901 -2.7415 13 6 2.0400 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.2107 -0.5471 3.6670 16 6 0.8176 -0.4951 4.3198 17 8 0.5349 0.7435 4.9740 18 6 0.5029 -1.6960 5.1742 19 6 1.0503 -2.9270 4.8647 20 6 0.7658 -4.0274 5.6516 21 6 -0.0752 -3.8991 6.7411 22 6 -0.6268 -2.6692 7.0475 23 6 -0.3378 -1.5676 6.2640 24 6 0.2532 -0.5865 2.8906 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6768 1.9563 0.8900 31 1 3.1301 -0.7209 -1.2494 32 1 1.6766 -1.7490 -1.2492 33 1 1.6659 -0.1941 -5.6867 34 1 3.1301 -0.7217 1.2491 35 1 1.6767 -1.7489 1.2493 36 1 2.9279 0.1462 4.1067 37 1 2.6072 -1.5565 3.5581 38 1 -0.3503 0.7911 5.3605 39 1 1.7039 -3.0281 4.0109 40 1 1.1970 -4.9882 5.4124 41 1 -0.3010 -4.7598 7.3533 42 1 -1.2842 -2.5690 7.8985 43 1 -0.7691 -0.6067 6.5031 44 1 0.0762 -1.6076 2.5527 45 1 -0.5939 0.0753 2.7098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291565150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:03 Heat of formation + Delta-G solvation = -11.495947 kcal Electronic energy + Delta-G solvation = -23390.493584 eV Core-core repulsion = 20179.983695 eV Total energy + Delta-G solvation = -3210.509889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.93048 -39.64911 -38.17720 -36.33381 -34.41206 -32.37324 -31.74553 -30.09606 -28.98308 -28.15838 -26.89005 -25.87970 -24.17783 -23.50870 -22.38879 -20.77950 -19.52493 -18.92419 -18.72169 -17.32538 -16.72102 -16.61318 -16.18212 -15.90751 -15.71509 -15.44126 -14.97300 -14.90007 -14.43265 -14.30236 -14.18335 -13.94898 -13.63719 -13.57936 -13.26757 -13.09015 -12.77994 -12.75038 -12.58255 -12.27770 -12.18863 -12.03824 -11.94122 -11.73867 -11.58245 -11.34858 -11.21570 -10.89002 -10.70655 -10.68220 -9.84336 -9.69911 -9.57743 -8.22034 -6.22624 0.35797 0.47832 1.34898 1.37220 1.48350 2.39205 2.72979 2.83524 3.12770 3.24221 3.46923 3.57763 3.96156 3.99681 4.09682 4.14691 4.17027 4.27531 4.39108 4.42181 4.50333 4.57925 4.62085 4.73100 4.75495 4.79236 4.88245 4.95012 5.01330 5.04420 5.07643 5.12342 5.17511 5.35522 5.42060 5.43651 5.51780 5.54684 5.58646 5.61258 5.63253 5.75528 5.82211 6.05909 6.09818 6.41898 6.76521 6.84661 7.39727 8.94453 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025068 B = 0.003602 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.702088 B = 7772.001811 C = 8379.053660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.042 4.042 3 C -0.108 4.108 4 C -0.002 4.002 5 C -0.504 4.504 6 H 0.041 0.959 7 C 0.000 4.000 8 N -0.956 5.956 9 Si 0.943 3.057 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.248 1.248 13 C 0.037 3.963 14 N -0.473 5.473 15 C 0.014 3.986 16 C 0.155 3.845 17 O -0.538 6.538 18 C -0.114 4.114 19 C -0.125 4.125 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.010 4.010 25 H 0.063 0.937 26 H 0.030 0.970 27 H 0.043 0.957 28 H 0.037 0.963 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.262 0.738 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.390 0.610 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.139 0.861 44 H 0.079 0.921 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.700 -8.496 27.226 28.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.043 4.043 3 C -0.166 4.166 4 C -0.040 4.040 5 C -0.542 4.542 6 H 0.060 0.940 7 C -0.196 4.196 8 N -0.598 5.598 9 Si 0.767 3.233 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.172 1.172 13 C -0.091 4.091 14 N -0.195 5.195 15 C -0.114 4.114 16 C 0.112 3.888 17 O -0.346 6.346 18 C -0.115 4.115 19 C -0.143 4.143 20 C -0.143 4.143 21 C -0.144 4.144 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.139 4.139 25 H 0.082 0.918 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.241 0.759 39 H 0.142 0.858 40 H 0.156 0.844 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.157 0.843 44 H 0.097 0.903 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.026 -7.661 26.672 27.824 hybrid contribution -0.180 -1.317 -0.838 1.571 sum -2.206 -8.977 25.834 27.438 Atomic orbital electron populations 1.21731 0.95174 1.00351 1.00424 1.20255 0.95561 0.95603 0.92832 1.21497 0.99304 0.95913 0.99855 1.19597 0.95699 0.95289 0.93386 1.21425 1.30138 1.12094 0.90582 0.94043 1.25951 0.97597 1.00349 0.95679 1.70074 1.48328 1.42907 0.98464 0.85769 0.79677 0.79871 0.77980 1.19431 1.21441 1.17210 1.22675 0.99957 0.95523 0.90942 1.68513 1.03240 1.47075 1.00670 1.24255 0.95859 1.00960 0.90327 1.21222 0.96078 0.82356 0.89114 1.86562 1.38993 1.34176 1.74905 1.20286 0.99185 0.94797 0.97257 1.21158 1.00249 0.92527 1.00357 1.21425 0.98485 0.98999 0.95424 1.21536 0.96955 0.98496 0.97444 1.21459 0.99932 0.92542 1.00045 1.21184 0.97922 1.00140 0.94687 1.24808 0.95199 0.99914 0.93966 0.91802 0.95082 0.93836 0.94352 0.95379 0.92087 0.96849 0.96897 0.92881 0.91139 0.93435 0.89071 0.88650 0.75859 0.85832 0.84379 0.83929 0.83719 0.84300 0.90268 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.57 7.35 71.98 0.53 -4.04 16 2 C -0.04 -1.65 0.60 -52.18 -0.03 -1.68 16 3 C -0.11 -4.38 8.06 71.98 0.58 -3.80 16 4 C 0.00 -0.09 3.11 29.85 0.09 0.01 16 5 C -0.50 -28.92 8.20 25.60 0.21 -28.71 16 6 H 0.04 2.62 5.92 -2.91 -0.02 2.61 16 7 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 8 N -0.96 -60.94 13.96 21.45 0.30 -60.64 16 9 Si 0.94 45.01 27.47 68.60 1.88 46.89 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.25 -11.03 6.54 99.48 0.65 -10.37 16 13 C 0.04 1.17 3.91 86.30 0.34 1.50 16 14 N -0.47 -13.08 5.17 -910.92 -4.71 -17.79 16 15 C 0.01 0.33 7.14 86.41 0.62 0.94 16 16 C 0.15 3.21 1.79 -10.89 -0.02 3.19 16 17 O -0.54 -11.29 13.24 -148.98 -1.97 -13.26 16 18 C -0.11 -2.08 5.27 -19.86 -0.10 -2.19 16 19 C -0.12 -2.21 8.96 22.27 0.20 -2.01 16 20 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 21 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 22 C -0.12 -1.59 10.05 22.27 0.22 -1.36 16 23 C -0.12 -1.82 9.37 22.27 0.21 -1.61 16 24 C -0.01 -0.24 5.49 86.41 0.47 0.24 16 25 H 0.06 2.14 5.61 -2.38 -0.01 2.12 16 26 H 0.03 1.37 6.62 -2.39 -0.02 1.36 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.03 1.28 6.62 -2.38 -0.02 1.26 16 30 H 0.06 2.26 7.60 -2.39 -0.02 2.24 16 31 H 0.01 0.62 7.20 -2.38 -0.02 0.61 16 32 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 33 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 34 H 0.07 2.16 8.08 -2.38 -0.02 2.14 16 35 H 0.05 1.38 7.38 -2.39 -0.02 1.37 16 36 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.10 1.89 5.79 -2.39 -0.01 1.87 16 38 H 0.39 4.96 7.28 -74.06 -0.54 4.43 16 39 H 0.12 2.09 6.27 -2.91 -0.02 2.07 16 40 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 43 H 0.14 1.46 6.40 -2.91 -0.02 1.44 16 44 H 0.08 1.84 7.29 -2.38 -0.02 1.82 16 45 H 0.09 2.23 7.00 -2.38 -0.02 2.21 16 Total: -1.00 -69.93 344.99 0.12 -69.81 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.39 Total: 17.14 kcal Atomic # 6 Polarization: -46.39 SS G_CDS: 4.23 Total: -42.16 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -4.41 Total: -78.43 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -1.97 Total: -13.26 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.89 kcal Total: -69.93 0.12 -69.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291565150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.316 kcal (2) G-P(sol) polarization free energy of solvation -69.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds