Wall clock time and date at job start Tue Mar 31 2020 06:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47424 * 2 1 4 4 C 1.52997 * 109.47580 * 120.00368 * 2 1 3 5 5 C 1.52995 * 109.47085 * 300.00017 * 4 2 1 6 6 C 1.50707 * 109.47301 * 179.97438 * 5 4 2 7 7 C 1.38238 * 119.99792 * 90.00016 * 6 5 4 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38234 * 120.00179 * 269.97953 * 6 5 4 12 12 N 1.46509 * 109.47188 * 240.00572 * 2 1 3 13 13 C 1.34773 * 119.99780 * 59.99281 * 12 2 1 14 14 O 1.21282 * 119.99969 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99783 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47027 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.46902 * 180.02562 * 16 15 13 18 18 H 1.07990 * 120.00044 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99695 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99855 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99845 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47164 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46793 * 120.00006 * 21 19 17 24 24 H 1.48498 * 109.47254 * 240.00183 * 21 19 17 25 25 H 1.09007 * 109.46674 * 299.99445 * 1 2 3 26 26 H 1.08992 * 109.47587 * 59.99427 * 1 2 3 27 27 H 1.09004 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47173 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47206 * 300.00806 * 3 2 1 30 30 H 1.09007 * 109.46290 * 60.00313 * 3 2 1 31 31 H 1.08995 * 109.47671 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46984 * 59.99764 * 4 2 1 33 33 H 1.09005 * 109.47610 * 59.99944 * 5 4 2 34 34 H 1.09000 * 109.47256 * 299.99285 * 5 4 2 35 35 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 37 37 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 38 38 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 39 39 H 1.07999 * 119.99968 * 359.97438 * 11 6 5 40 40 H 0.96998 * 119.99802 * 240.00362 * 12 2 1 41 41 H 1.09003 * 109.46972 * 300.00468 * 15 13 12 42 42 H 1.09004 * 109.47012 * 60.00413 * 15 13 12 43 43 H 1.09003 * 109.47204 * 299.99809 * 16 15 13 44 44 H 1.08991 * 109.47552 * 60.00288 * 16 15 13 45 45 H 0.97007 * 119.99339 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5301 -0.0002 2.4984 6 6 2.0320 -0.7110 3.7289 7 6 3.2400 -0.3461 4.2935 8 6 3.7001 -0.9977 5.4224 9 6 2.9521 -2.0138 5.9871 10 6 1.7468 -2.3823 5.4194 11 6 1.2844 -1.7276 4.2932 12 7 2.0183 -0.6905 -1.1963 13 6 1.6926 -0.2300 -2.4203 14 8 0.9956 0.7563 -2.5315 15 6 2.1945 -0.9406 -3.6508 16 6 1.6850 -0.2189 -4.9000 17 6 2.1864 -0.9299 -6.1305 18 1 2.8067 -1.8083 -6.0315 19 6 1.8530 -0.4589 -7.3828 20 7 1.0980 0.6112 -7.5033 21 14 2.4751 -1.3397 -8.9081 22 1 3.2994 -2.5070 -8.5040 23 1 1.3197 -1.8062 -9.7160 24 1 3.3001 -0.4067 -9.7167 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8898 30 1 1.6767 1.9563 0.8901 31 1 3.1300 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2491 33 1 0.4401 -0.0002 2.4986 34 1 1.8935 1.0275 2.4985 35 1 3.8242 0.4481 3.8525 36 1 4.6440 -0.7129 5.8633 37 1 3.3114 -2.5226 6.8694 38 1 1.1644 -3.1791 5.8580 39 1 0.3403 -2.0121 3.8525 40 1 2.5759 -1.4792 -1.1073 41 1 3.2845 -0.9410 -3.6510 42 1 1.8307 -1.9682 -3.6507 43 1 0.5949 -0.2182 -4.9000 44 1 2.0489 0.8084 -4.8999 45 1 0.8632 0.9423 -8.3843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291567744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:32 Heat of formation + Delta-G solvation = -41.503635 kcal Electronic energy + Delta-G solvation = -22237.316423 eV Core-core repulsion = 19025.505302 eV Total energy + Delta-G solvation = -3211.811120 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.00492 -39.33953 -36.85619 -33.58305 -33.38779 -31.68092 -31.16178 -30.46565 -28.39999 -27.17781 -25.77723 -24.68585 -22.83887 -22.10251 -21.14510 -19.49885 -19.16549 -17.18420 -16.88640 -16.06008 -15.65123 -15.53069 -15.11871 -14.85874 -14.40757 -14.33024 -13.89803 -13.67557 -13.36010 -13.16936 -13.15968 -12.89432 -12.29284 -12.28508 -12.18500 -11.78571 -11.51766 -11.43128 -11.37297 -11.11417 -11.11133 -10.93382 -10.72599 -10.66878 -10.56154 -9.91946 -9.59996 -9.19996 -9.09990 -9.02411 -8.74254 -8.69734 -8.30364 -5.94583 -3.98565 1.07702 1.12200 3.32702 3.33647 3.40133 3.42946 3.45224 3.64418 4.40994 4.48952 4.54379 4.71802 4.82626 4.82933 4.94638 5.05042 5.13930 5.22205 5.34008 5.36735 5.40432 5.41191 5.63249 5.70964 5.76244 5.79938 5.84927 5.85033 5.95674 6.07499 6.07740 6.19112 6.23667 6.26797 6.27567 6.37684 6.51885 6.54985 6.73788 6.92597 6.95064 7.77034 7.89584 8.01117 8.09622 8.41597 8.88134 9.10717 9.64839 11.16356 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.036891 B = 0.002416 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.816849 B =11587.570354 C =11850.073122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.174 3.826 3 C -0.166 4.166 4 C -0.113 4.113 5 C -0.082 4.082 6 C -0.077 4.077 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.128 4.128 10 C -0.119 4.119 11 C -0.118 4.118 12 N -0.738 5.738 13 C 0.513 3.487 14 O -0.531 6.531 15 C -0.132 4.132 16 C 0.038 3.962 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.395 0.605 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.204 -4.534 27.502 28.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.088 3.912 3 C -0.224 4.224 4 C -0.151 4.151 5 C -0.120 4.120 6 C -0.077 4.077 7 C -0.136 4.136 8 C -0.137 4.137 9 C -0.146 4.146 10 C -0.137 4.137 11 C -0.136 4.136 12 N -0.392 5.392 13 C 0.301 3.699 14 O -0.406 6.406 15 C -0.172 4.172 16 C 0.000 4.000 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.228 0.772 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.605 -3.686 27.268 27.639 hybrid contribution 0.659 -0.935 -0.743 1.364 sum 3.265 -4.621 26.525 27.122 Atomic orbital electron populations 1.22282 0.94626 1.02019 1.03439 1.20195 0.94238 0.92521 0.84233 1.22283 1.00734 0.95911 1.03439 1.21786 1.01138 0.99512 0.92621 1.20737 1.01437 0.99101 0.90688 1.19962 0.94761 0.96410 0.96584 1.21101 0.95943 1.00268 0.96263 1.21155 0.99771 0.96486 0.96312 1.21141 0.95349 0.97939 1.00221 1.21155 0.96448 0.99792 0.96326 1.21099 1.00014 0.96162 0.96299 1.46351 1.55076 1.32317 1.05456 1.21446 0.79381 0.84555 0.84479 1.90596 1.37179 1.26193 1.86650 1.21871 1.01347 1.00373 0.93569 1.18884 0.97067 0.95561 0.88462 1.21276 1.31757 1.12304 0.91057 0.92616 1.25033 0.95229 0.95071 0.99136 1.70014 1.36677 1.22848 1.23309 0.86543 0.78600 0.79634 0.83227 1.19774 1.21038 1.21033 0.92182 0.90003 0.92957 0.92956 0.90002 0.92184 0.91289 0.91293 0.90285 0.90283 0.86059 0.86204 0.86324 0.86203 0.86061 0.77173 0.90443 0.90439 0.95863 0.95860 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 8.05 37.16 0.30 -1.84 16 2 C 0.17 2.12 0.83 -131.82 -0.11 2.01 16 3 C -0.17 -2.14 8.05 37.16 0.30 -1.84 16 4 C -0.11 -1.04 4.37 -26.74 -0.12 -1.16 16 5 C -0.08 -0.68 4.64 -27.88 -0.13 -0.81 16 6 C -0.08 -0.66 5.13 -104.62 -0.54 -1.20 16 7 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 8 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 9 C -0.13 -0.96 10.05 -39.58 -0.40 -1.36 16 10 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 11 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 12 N -0.74 -10.31 5.11 -47.60 -0.24 -10.55 16 13 C 0.51 9.69 7.25 -10.99 -0.08 9.61 16 14 O -0.53 -11.96 12.19 5.56 0.07 -11.90 16 15 C -0.13 -2.68 5.64 -27.89 -0.16 -2.84 16 16 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 17 C -0.53 -15.02 9.11 -34.43 -0.31 -15.34 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -27.58 13.29 55.43 0.74 -26.84 16 21 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 26 H 0.08 1.36 6.17 -51.93 -0.32 1.04 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.36 6.17 -51.93 -0.32 1.04 16 30 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.64 6.37 -51.93 -0.33 0.30 16 34 H 0.08 0.64 6.37 -51.93 -0.33 0.30 16 35 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 36 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.39 4.45 8.47 -40.82 -0.35 4.11 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 43 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 44 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 361.58 15.07 5.45 5.45 Total: -1.00 -33.53 361.58 -9.38 -42.91 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.35 Total: 1.80 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -3.02 Total: -17.66 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.49 Total: -37.39 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.07 Total: -11.90 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.53 -9.38 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291567744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.407 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds