Wall clock time and date at job start Tue Mar 31 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47424 * 2 1 4 4 C 1.52997 * 109.47580 * 120.00368 * 2 1 3 5 5 C 1.52995 * 109.47085 * 300.00017 * 4 2 1 6 6 C 1.50707 * 109.47301 * 179.97438 * 5 4 2 7 7 C 1.38238 * 119.99792 * 90.00016 * 6 5 4 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38234 * 120.00179 * 269.97953 * 6 5 4 12 12 N 1.46509 * 109.47188 * 240.00572 * 2 1 3 13 13 C 1.34773 * 119.99780 * 59.99281 * 12 2 1 14 14 O 1.21282 * 119.99969 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99783 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47027 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.46902 * 180.02562 * 16 15 13 18 18 H 1.07990 * 120.00044 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99695 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99855 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99845 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47164 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46793 * 120.00006 * 21 19 17 24 24 H 1.48498 * 109.47254 * 240.00183 * 21 19 17 25 25 H 1.09007 * 109.46674 * 299.99445 * 1 2 3 26 26 H 1.08992 * 109.47587 * 59.99427 * 1 2 3 27 27 H 1.09004 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47173 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47206 * 300.00806 * 3 2 1 30 30 H 1.09007 * 109.46290 * 60.00313 * 3 2 1 31 31 H 1.08995 * 109.47671 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46984 * 59.99764 * 4 2 1 33 33 H 1.09005 * 109.47610 * 59.99944 * 5 4 2 34 34 H 1.09000 * 109.47256 * 299.99285 * 5 4 2 35 35 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 37 37 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 38 38 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 39 39 H 1.07999 * 119.99968 * 359.97438 * 11 6 5 40 40 H 0.96998 * 119.99802 * 240.00362 * 12 2 1 41 41 H 1.09003 * 109.46972 * 300.00468 * 15 13 12 42 42 H 1.09004 * 109.47012 * 60.00413 * 15 13 12 43 43 H 1.09003 * 109.47204 * 299.99809 * 16 15 13 44 44 H 1.08991 * 109.47552 * 60.00288 * 16 15 13 45 45 H 0.97007 * 119.99339 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5301 -0.0002 2.4984 6 6 2.0320 -0.7110 3.7289 7 6 3.2400 -0.3461 4.2935 8 6 3.7001 -0.9977 5.4224 9 6 2.9521 -2.0138 5.9871 10 6 1.7468 -2.3823 5.4194 11 6 1.2844 -1.7276 4.2932 12 7 2.0183 -0.6905 -1.1963 13 6 1.6926 -0.2300 -2.4203 14 8 0.9956 0.7563 -2.5315 15 6 2.1945 -0.9406 -3.6508 16 6 1.6850 -0.2189 -4.9000 17 6 2.1864 -0.9299 -6.1305 18 1 2.8067 -1.8083 -6.0315 19 6 1.8530 -0.4589 -7.3828 20 7 1.0980 0.6112 -7.5033 21 14 2.4751 -1.3397 -8.9081 22 1 3.2994 -2.5070 -8.5040 23 1 1.3197 -1.8062 -9.7160 24 1 3.3001 -0.4067 -9.7167 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8898 30 1 1.6767 1.9563 0.8901 31 1 3.1300 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2491 33 1 0.4401 -0.0002 2.4986 34 1 1.8935 1.0275 2.4985 35 1 3.8242 0.4481 3.8525 36 1 4.6440 -0.7129 5.8633 37 1 3.3114 -2.5226 6.8694 38 1 1.1644 -3.1791 5.8580 39 1 0.3403 -2.0121 3.8525 40 1 2.5759 -1.4792 -1.1073 41 1 3.2845 -0.9410 -3.6510 42 1 1.8307 -1.9682 -3.6507 43 1 0.5949 -0.2182 -4.9000 44 1 2.0489 0.8084 -4.8999 45 1 0.8632 0.9423 -8.3843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291567744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:31 Heat of formation + Delta-G solvation = -61.105400 kcal Electronic energy + Delta-G solvation = -22238.166419 eV Core-core repulsion = 19025.505302 eV Total energy + Delta-G solvation = -3212.661117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.17922 -40.10383 -38.02460 -35.53843 -34.48823 -33.22380 -31.99134 -31.70399 -29.19332 -28.23697 -27.69762 -25.63713 -23.76256 -23.38864 -22.05137 -20.90253 -20.29254 -18.80945 -17.83280 -17.45502 -16.82993 -16.41543 -16.39488 -16.28203 -15.83820 -15.20692 -14.97122 -14.67203 -14.45260 -14.24323 -14.18243 -13.93790 -13.70275 -13.64034 -13.21070 -13.13627 -12.87958 -12.70767 -12.60879 -12.43387 -12.20177 -12.07603 -11.96516 -11.87325 -11.60836 -11.53532 -11.47700 -11.25770 -10.57675 -10.39781 -9.97248 -9.75964 -9.52302 -8.18089 -6.31858 0.50503 0.56142 1.41622 1.43082 1.56378 1.82014 2.29796 2.45520 2.95276 3.14786 3.64101 3.91055 4.02034 4.07986 4.11702 4.21623 4.28229 4.37361 4.39380 4.50395 4.52774 4.58188 4.69075 4.72562 4.73886 4.81069 4.83945 4.98288 5.01867 5.06340 5.12388 5.18942 5.22916 5.24804 5.46014 5.46627 5.50552 5.64516 5.65464 5.69241 5.73454 5.80701 5.86929 6.18833 6.19565 6.74971 6.87378 7.38030 7.47982 8.94652 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.036891 B = 0.002416 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.816849 B =11587.570354 C =11850.073122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.172 3.828 3 C -0.163 4.163 4 C -0.099 4.099 5 C -0.077 4.077 6 C -0.087 4.087 7 C -0.130 4.130 8 C -0.129 4.129 9 C -0.136 4.136 10 C -0.129 4.129 11 C -0.130 4.130 12 N -0.717 5.717 13 C 0.513 3.487 14 O -0.575 6.575 15 C -0.122 4.122 16 C 0.044 3.956 17 C -0.542 4.542 18 H 0.074 0.926 19 C -0.008 4.008 20 N -0.937 5.937 21 Si 0.974 3.026 22 H -0.253 1.253 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.412 0.588 41 H 0.100 0.900 42 H 0.100 0.900 43 H -0.018 1.018 44 H -0.018 1.018 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.755 -6.730 29.072 30.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.087 3.913 3 C -0.221 4.221 4 C -0.137 4.137 5 C -0.115 4.115 6 C -0.087 4.087 7 C -0.148 4.148 8 C -0.147 4.147 9 C -0.154 4.154 10 C -0.147 4.147 11 C -0.148 4.148 12 N -0.370 5.370 13 C 0.301 3.699 14 O -0.454 6.454 15 C -0.162 4.162 16 C 0.007 3.993 17 C -0.580 4.580 18 H 0.092 0.908 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.798 3.202 22 H -0.177 1.177 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.249 0.751 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.000 1.000 44 H 0.000 1.000 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.188 -5.926 28.889 29.786 hybrid contribution 0.158 -0.225 -1.131 1.164 sum 4.346 -6.151 27.758 28.762 Atomic orbital electron populations 1.22241 0.95144 1.02154 1.02552 1.20383 0.93901 0.92485 0.84576 1.22242 1.01092 0.96206 1.02551 1.21670 1.01516 0.99469 0.91024 1.20683 1.01595 0.99094 0.90103 1.20002 0.95108 0.96797 0.96830 1.21307 0.96110 1.00701 0.96665 1.21430 1.00509 0.96469 0.96250 1.21444 0.95291 0.97910 1.00761 1.21431 0.96789 1.00175 0.96263 1.21306 1.00474 0.96302 0.96700 1.46114 1.54018 1.32376 1.04476 1.21147 0.79118 0.83952 0.85659 1.90606 1.39294 1.28140 1.87404 1.21644 1.02501 1.00570 0.91482 1.18659 0.94425 0.94243 0.91995 1.21757 1.31730 1.12790 0.91706 0.90773 1.26149 0.95271 0.95824 1.03334 1.70189 1.38293 1.24887 1.24376 0.85272 0.78137 0.78702 0.78122 1.17670 1.20604 1.20599 0.89768 0.94174 0.92269 0.92270 0.94172 0.89770 0.90485 0.90490 0.89981 0.89978 0.85264 0.84675 0.84599 0.84674 0.85266 0.75132 0.88223 0.88219 1.00000 0.99993 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 8.05 71.98 0.58 -3.55 16 2 C 0.17 3.98 0.83 3.60 0.00 3.98 16 3 C -0.16 -4.13 8.05 71.98 0.58 -3.55 16 4 C -0.10 -1.56 4.37 30.59 0.13 -1.43 16 5 C -0.08 -1.09 4.64 29.85 0.14 -0.95 16 6 C -0.09 -1.31 5.13 -19.86 -0.10 -1.41 16 7 C -0.13 -1.89 9.70 22.27 0.22 -1.67 16 8 C -0.13 -1.72 10.05 22.27 0.22 -1.49 16 9 C -0.14 -1.75 10.05 22.27 0.22 -1.53 16 10 C -0.13 -1.72 10.05 22.27 0.22 -1.49 16 11 C -0.13 -1.89 9.70 22.27 0.22 -1.67 16 12 N -0.72 -19.15 5.11 -422.92 -2.16 -21.31 16 13 C 0.51 19.69 7.25 87.66 0.64 20.33 16 14 O -0.58 -27.46 12.19 -3.04 -0.04 -27.49 16 15 C -0.12 -4.97 5.64 29.85 0.17 -4.80 16 16 C 0.04 2.50 4.26 29.85 0.13 2.63 16 17 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 18 H 0.07 3.91 7.74 -2.92 -0.02 3.89 16 19 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 20 N -0.94 -60.06 13.29 21.45 0.28 -59.78 16 21 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 22 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 H 0.08 1.68 6.43 -2.38 -0.02 1.67 16 26 H 0.04 1.38 6.17 -2.39 -0.01 1.36 16 27 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 1.38 6.17 -2.39 -0.01 1.36 16 30 H 0.08 1.68 6.43 -2.38 -0.02 1.67 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.08 1.11 6.37 -2.38 -0.02 1.10 16 34 H 0.08 1.11 6.37 -2.39 -0.02 1.10 16 35 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 37 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 38 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 39 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.41 8.22 8.47 -92.71 -0.79 7.43 16 41 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 42 H 0.10 3.60 8.14 -2.38 -0.02 3.58 16 43 H -0.02 -1.18 8.10 -2.39 -0.02 -1.19 16 44 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 45 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 Total: -1.00 -76.65 361.58 4.36 -72.29 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.18 Total: 17.15 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 4.06 Total: -27.68 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -1.87 Total: -81.08 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.04 Total: -27.49 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -76.65 4.36 -72.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291567744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.186 kcal (2) G-P(sol) polarization free energy of solvation -76.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds