Wall clock time and date at job start Tue Mar 31 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46938 * 2 1 4 4 C 1.38284 * 119.93074 * 90.00383 * 3 2 1 5 5 C 1.38105 * 120.07500 * 180.02562 * 4 3 2 6 6 C 1.38874 * 119.92784 * 359.97438 * 5 4 3 7 7 N 1.39923 * 120.06950 * 179.97438 * 6 5 4 8 8 C 1.34772 * 120.00127 * 8.41128 * 7 6 5 9 9 O 1.21285 * 120.00170 * 5.97181 * 8 7 6 10 10 C 1.50702 * 120.00081 * 185.96582 * 8 7 6 11 11 C 1.52997 * 109.47371 * 184.91477 * 10 8 7 12 12 C 1.50701 * 109.47327 * 180.02562 * 11 10 8 13 13 H 1.07995 * 119.99885 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99877 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00124 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99982 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46838 * 59.99672 * 16 14 12 18 18 H 1.48497 * 109.47220 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47002 * 299.99875 * 16 14 12 20 20 C 1.46500 * 120.00042 * 188.13904 * 7 6 5 21 21 C 1.53007 * 109.47190 * 294.06049 * 20 7 6 22 22 C 1.53008 * 109.47171 * 54.05726 * 20 7 6 23 23 C 1.38878 * 119.85804 * 0.24800 * 6 5 4 24 24 C 1.38112 * 119.92590 * 359.52281 * 23 6 5 25 25 H 1.08999 * 109.47172 * 299.99432 * 1 2 3 26 26 H 1.09001 * 109.47519 * 59.99798 * 1 2 3 27 27 H 1.08996 * 109.47230 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47172 * 240.00568 * 2 1 3 29 29 H 1.09001 * 109.47519 * 120.00202 * 2 1 3 30 30 H 1.08007 * 119.96156 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.03728 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.47271 * 304.91820 * 10 8 7 33 33 H 1.09005 * 109.47055 * 64.91471 * 10 8 7 34 34 H 1.08995 * 109.47203 * 300.00385 * 11 10 8 35 35 H 1.09005 * 109.47036 * 59.99982 * 11 10 8 36 36 H 0.97002 * 120.00148 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.47378 * 174.06100 * 20 7 6 38 38 H 1.08998 * 109.46879 * 53.99912 * 21 20 7 39 39 H 1.09001 * 109.47472 * 173.99683 * 21 20 7 40 40 H 1.08995 * 109.47026 * 294.00409 * 21 20 7 41 41 H 1.08999 * 109.47035 * 65.50213 * 22 20 7 42 42 H 1.08998 * 109.47254 * 185.50019 * 22 20 7 43 43 H 1.08998 * 109.46890 * 305.50336 * 22 20 7 44 44 H 1.07997 * 120.03525 * 179.74743 * 23 6 5 45 45 H 1.08002 * 119.95990 * 180.22888 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2623 2.0714 1.1984 5 6 2.7221 3.3736 1.2019 6 6 2.9540 4.0297 0.0001 7 7 3.4193 5.3493 0.0001 8 6 3.8040 5.9282 1.1548 9 8 3.8501 5.2741 2.1752 10 6 4.1771 7.3881 1.1782 11 6 4.6891 7.7615 2.5707 12 6 5.0616 9.2215 2.5942 13 1 4.9452 9.8229 1.7048 14 6 5.5520 9.7893 3.7510 15 7 5.6942 9.0569 4.8340 16 14 6.0144 11.5990 3.7800 17 1 4.8204 12.4201 3.4553 18 1 6.5112 11.9614 5.1316 19 1 7.0785 11.8541 2.7761 20 6 3.4940 6.0998 -1.2558 21 6 4.5413 5.4608 -2.1702 22 6 2.1294 6.0739 -1.9474 23 6 2.7176 3.3753 -1.2018 24 6 2.2623 2.0713 -1.1983 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0822 1.5604 2.1328 31 1 2.9012 3.8812 2.1382 32 1 4.9583 7.5753 0.4416 33 1 3.3008 7.9909 0.9396 34 1 3.9079 7.5743 3.3074 35 1 5.5654 7.1587 2.8094 36 1 6.0389 9.4564 5.6479 37 1 3.7757 7.1316 -1.0464 38 1 4.3178 4.4012 -2.2936 39 1 4.5222 5.9518 -3.1432 40 1 5.5298 5.5742 -1.7253 41 1 1.4039 6.6149 -1.3399 42 1 2.2089 6.5473 -2.9259 43 1 1.8032 5.0410 -2.0689 44 1 2.8930 3.8841 -2.1380 45 1 2.0818 1.5606 -2.1327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291589520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:28 Heat of formation + Delta-G solvation = -6.549674 kcal Electronic energy + Delta-G solvation = -23137.334747 eV Core-core repulsion = 19927.039344 eV Total energy + Delta-G solvation = -3210.295403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.90031 -38.52059 -36.84249 -34.04284 -33.37236 -31.97789 -31.13388 -30.47474 -28.63752 -27.32977 -25.84344 -23.88100 -22.82419 -22.08419 -21.62704 -20.63369 -18.91541 -17.23796 -16.59240 -15.99350 -15.94322 -15.42283 -14.77934 -14.63312 -14.44141 -13.80249 -13.70981 -13.61017 -13.45751 -13.23870 -13.06868 -12.97915 -12.52894 -12.29824 -12.18354 -12.01630 -11.77804 -11.45980 -11.40570 -11.32241 -11.08617 -11.02612 -10.94149 -10.64789 -10.25756 -10.02167 -9.87565 -9.62244 -9.17618 -8.86298 -8.69778 -8.35912 -7.57766 -5.99575 -4.04486 1.44838 1.58860 2.99690 3.03207 3.32234 3.37288 3.38723 3.97762 4.43408 4.65279 4.78620 4.80092 4.90214 4.97133 5.07330 5.15380 5.26150 5.27889 5.35477 5.44387 5.46846 5.51569 5.56163 5.63061 5.64961 5.75468 5.77689 5.83033 5.95066 6.06518 6.07748 6.11077 6.12046 6.14354 6.22150 6.49449 6.54085 6.78105 6.80261 6.83453 7.36811 7.59887 7.68914 7.78938 8.01429 8.32472 8.54675 9.02901 9.59323 11.11295 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.003486 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.644640 B = 8029.830147 C = 8871.704606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.121 4.121 4 C -0.094 4.094 5 C -0.162 4.162 6 C 0.165 3.835 7 N -0.557 5.557 8 C 0.511 3.489 9 O -0.506 6.506 10 C -0.129 4.129 11 C 0.037 3.963 12 C -0.529 4.529 13 H 0.055 0.945 14 C 0.059 3.941 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.122 3.878 21 C -0.180 4.180 22 C -0.180 4.180 23 C -0.178 4.178 24 C -0.099 4.099 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.119 0.881 31 H 0.175 0.825 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.026 0.974 35 H 0.023 0.977 36 H 0.262 0.738 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.140 0.860 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.402 -13.555 -16.077 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.122 4.122 4 C -0.113 4.113 5 C -0.182 4.182 6 C 0.070 3.930 7 N -0.281 5.281 8 C 0.303 3.697 9 O -0.381 6.381 10 C -0.168 4.168 11 C 0.000 4.000 12 C -0.567 4.567 13 H 0.074 0.926 14 C -0.143 4.143 15 N -0.527 5.527 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C 0.019 3.981 21 C -0.237 4.237 22 C -0.238 4.238 23 C -0.198 4.198 24 C -0.118 4.118 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.192 0.808 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.125 0.875 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.157 0.843 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.273 -13.776 -15.308 22.194 hybrid contribution 0.299 1.033 -0.073 1.078 sum -7.974 -12.744 -15.381 21.508 Atomic orbital electron populations 1.21752 0.95163 1.01238 1.02178 1.20449 0.95829 0.93053 1.02306 1.19796 1.02622 0.96423 0.93368 1.21002 0.98430 0.94617 0.97220 1.22525 1.00220 0.95340 1.00102 1.18019 0.96200 0.84427 0.94342 1.46042 1.61861 1.11207 1.08980 1.21855 0.74969 0.91405 0.81465 1.90396 1.50318 1.64077 1.33287 1.21960 1.01866 0.88209 1.04794 1.18921 0.97065 0.95930 0.88111 1.21142 1.43730 0.94832 0.97028 0.92627 1.25014 0.95660 0.97959 0.95645 1.69980 1.45381 1.35888 1.01474 0.86647 0.78833 0.85290 0.77138 1.20223 1.21248 1.20222 1.21361 0.96317 0.97121 0.83268 1.22481 0.99342 1.02393 0.99525 1.22472 0.96513 1.03972 1.00810 1.21260 1.05944 0.95602 0.97006 1.20704 0.99824 0.94032 0.97229 0.92568 0.92736 0.92795 0.91565 0.91406 0.86292 0.80810 0.90025 0.89684 0.95572 0.95833 0.92827 0.87451 0.90856 0.91074 0.91775 0.91887 0.91096 0.90535 0.84274 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.16 0.37 -0.86 16 2 C -0.08 -0.74 6.06 -27.88 -0.17 -0.91 16 3 C -0.12 -1.46 5.14 -104.59 -0.54 -2.00 16 4 C -0.09 -1.32 9.69 -39.61 -0.38 -1.70 16 5 C -0.16 -2.72 8.96 -39.40 -0.35 -3.07 16 6 C 0.17 2.56 6.06 -83.69 -0.51 2.05 16 7 N -0.56 -8.74 2.62 -106.38 -0.28 -9.02 16 8 C 0.51 9.97 7.56 -10.99 -0.08 9.88 16 9 O -0.51 -11.53 12.51 5.55 0.07 -11.46 16 10 C -0.13 -2.57 4.04 -27.88 -0.11 -2.69 16 11 C 0.04 0.98 4.28 -27.88 -0.12 0.86 16 12 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 13 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 16 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C 0.12 1.46 3.04 -67.92 -0.21 1.25 16 21 C -0.18 -1.83 9.06 37.16 0.34 -1.49 16 22 C -0.18 -1.78 8.93 37.16 0.33 -1.45 16 23 C -0.18 -2.23 6.66 -39.39 -0.26 -2.49 16 24 C -0.10 -1.15 9.69 -39.61 -0.38 -1.53 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 31 H 0.18 3.39 4.76 -54.96 -0.26 3.13 16 32 H 0.08 1.48 7.37 -51.93 -0.38 1.09 16 33 H 0.08 1.56 8.09 -51.93 -0.42 1.14 16 34 H 0.03 0.75 8.05 -51.93 -0.42 0.34 16 35 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.11 1.27 5.78 -51.93 -0.30 0.97 16 38 H 0.07 0.75 4.82 -51.93 -0.25 0.50 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.76 4.59 -51.93 -0.24 0.53 16 44 H 0.14 1.45 3.58 -52.49 -0.19 1.26 16 45 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 353.40 15.07 5.33 5.33 Total: -1.00 -32.31 353.40 -8.73 -41.04 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.07 Total: 1.71 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -2.49 Total: -17.63 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.46 Total: -35.42 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.07 Total: -11.46 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.31 -8.73 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291589520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.489 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds