Wall clock time and date at job start Tue Mar 31 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46938 * 2 1 4 4 C 1.38284 * 119.93074 * 90.00383 * 3 2 1 5 5 C 1.38105 * 120.07500 * 180.02562 * 4 3 2 6 6 C 1.38874 * 119.92784 * 359.97438 * 5 4 3 7 7 N 1.39923 * 120.06950 * 179.97438 * 6 5 4 8 8 C 1.34772 * 120.00127 * 8.41128 * 7 6 5 9 9 O 1.21285 * 120.00170 * 5.97181 * 8 7 6 10 10 C 1.50702 * 120.00081 * 185.96582 * 8 7 6 11 11 C 1.52997 * 109.47371 * 184.91477 * 10 8 7 12 12 C 1.50701 * 109.47327 * 180.02562 * 11 10 8 13 13 H 1.07995 * 119.99885 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99877 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00124 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99982 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46838 * 59.99672 * 16 14 12 18 18 H 1.48497 * 109.47220 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47002 * 299.99875 * 16 14 12 20 20 C 1.46500 * 120.00042 * 188.13904 * 7 6 5 21 21 C 1.53007 * 109.47190 * 294.06049 * 20 7 6 22 22 C 1.53008 * 109.47171 * 54.05726 * 20 7 6 23 23 C 1.38878 * 119.85804 * 0.24800 * 6 5 4 24 24 C 1.38112 * 119.92590 * 359.52281 * 23 6 5 25 25 H 1.08999 * 109.47172 * 299.99432 * 1 2 3 26 26 H 1.09001 * 109.47519 * 59.99798 * 1 2 3 27 27 H 1.08996 * 109.47230 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47172 * 240.00568 * 2 1 3 29 29 H 1.09001 * 109.47519 * 120.00202 * 2 1 3 30 30 H 1.08007 * 119.96156 * 0.02562 * 4 3 2 31 31 H 1.07998 * 120.03728 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.47271 * 304.91820 * 10 8 7 33 33 H 1.09005 * 109.47055 * 64.91471 * 10 8 7 34 34 H 1.08995 * 109.47203 * 300.00385 * 11 10 8 35 35 H 1.09005 * 109.47036 * 59.99982 * 11 10 8 36 36 H 0.97002 * 120.00148 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.47378 * 174.06100 * 20 7 6 38 38 H 1.08998 * 109.46879 * 53.99912 * 21 20 7 39 39 H 1.09001 * 109.47472 * 173.99683 * 21 20 7 40 40 H 1.08995 * 109.47026 * 294.00409 * 21 20 7 41 41 H 1.08999 * 109.47035 * 65.50213 * 22 20 7 42 42 H 1.08998 * 109.47254 * 185.50019 * 22 20 7 43 43 H 1.08998 * 109.46890 * 305.50336 * 22 20 7 44 44 H 1.07997 * 120.03525 * 179.74743 * 23 6 5 45 45 H 1.08002 * 119.95990 * 180.22888 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2623 2.0714 1.1984 5 6 2.7221 3.3736 1.2019 6 6 2.9540 4.0297 0.0001 7 7 3.4193 5.3493 0.0001 8 6 3.8040 5.9282 1.1548 9 8 3.8501 5.2741 2.1752 10 6 4.1771 7.3881 1.1782 11 6 4.6891 7.7615 2.5707 12 6 5.0616 9.2215 2.5942 13 1 4.9452 9.8229 1.7048 14 6 5.5520 9.7893 3.7510 15 7 5.6942 9.0569 4.8340 16 14 6.0144 11.5990 3.7800 17 1 4.8204 12.4201 3.4553 18 1 6.5112 11.9614 5.1316 19 1 7.0785 11.8541 2.7761 20 6 3.4940 6.0998 -1.2558 21 6 4.5413 5.4608 -2.1702 22 6 2.1294 6.0739 -1.9474 23 6 2.7176 3.3753 -1.2018 24 6 2.2623 2.0713 -1.1983 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0822 1.5604 2.1328 31 1 2.9012 3.8812 2.1382 32 1 4.9583 7.5753 0.4416 33 1 3.3008 7.9909 0.9396 34 1 3.9079 7.5743 3.3074 35 1 5.5654 7.1587 2.8094 36 1 6.0389 9.4564 5.6479 37 1 3.7757 7.1316 -1.0464 38 1 4.3178 4.4012 -2.2936 39 1 4.5222 5.9518 -3.1432 40 1 5.5298 5.5742 -1.7253 41 1 1.4039 6.6149 -1.3399 42 1 2.2089 6.5473 -2.9259 43 1 1.8032 5.0410 -2.0689 44 1 2.8930 3.8841 -2.1380 45 1 2.0818 1.5606 -2.1327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291589520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:27 Heat of formation + Delta-G solvation = -24.171280 kcal Electronic energy + Delta-G solvation = -23138.098877 eV Core-core repulsion = 19927.039344 eV Total energy + Delta-G solvation = -3211.059533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.14930 -39.74098 -38.02208 -35.74026 -34.67350 -33.14317 -32.94849 -31.51943 -29.81084 -28.10441 -27.66964 -25.06120 -23.90728 -23.57435 -22.79152 -21.78887 -20.28613 -18.90795 -17.93847 -17.61711 -17.00839 -16.76724 -16.49814 -15.75386 -15.65840 -15.11188 -14.93998 -14.65758 -14.42693 -14.40166 -14.14099 -14.05624 -13.92297 -13.71986 -13.38052 -13.16489 -12.84030 -12.80015 -12.68088 -12.54649 -12.43178 -12.27245 -12.04297 -11.94739 -11.82429 -11.61060 -11.34960 -11.12123 -10.98643 -10.57937 -10.31782 -9.79614 -8.71828 -8.19919 -6.34488 0.33236 0.50775 1.41057 1.45679 1.53374 1.58312 1.80053 2.41435 2.89747 3.13179 3.51576 3.77212 3.95794 3.98757 4.10763 4.16803 4.24799 4.27173 4.36683 4.43046 4.49604 4.50721 4.59412 4.65722 4.74040 4.76394 4.87204 4.91724 4.92097 5.06030 5.10867 5.13047 5.18676 5.31548 5.34436 5.39611 5.40809 5.45752 5.50774 5.56414 5.69934 5.79005 5.80956 6.13731 6.20911 6.34984 6.83003 7.09347 7.35932 8.92618 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.003486 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.644640 B = 8029.830147 C = 8871.704606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 C -0.114 4.114 4 C -0.107 4.107 5 C -0.195 4.195 6 C 0.139 3.861 7 N -0.548 5.548 8 C 0.504 3.496 9 O -0.555 6.555 10 C -0.114 4.114 11 C 0.045 3.955 12 C -0.544 4.544 13 H 0.077 0.923 14 C -0.006 4.006 15 N -0.937 5.937 16 Si 0.974 3.026 17 H -0.262 1.262 18 H -0.288 1.288 19 H -0.261 1.261 20 C 0.109 3.891 21 C -0.175 4.175 22 C -0.173 4.173 23 C -0.164 4.164 24 C -0.095 4.095 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.106 0.894 33 H 0.105 0.895 34 H -0.017 1.017 35 H -0.018 1.018 36 H 0.263 0.737 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.168 0.832 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 -13.489 -20.357 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.115 4.115 4 C -0.126 4.126 5 C -0.215 4.215 6 C 0.044 3.956 7 N -0.271 5.271 8 C 0.296 3.704 9 O -0.434 6.434 10 C -0.153 4.153 11 C 0.007 3.993 12 C -0.582 4.582 13 H 0.095 0.905 14 C -0.204 4.204 15 N -0.577 5.577 16 Si 0.798 3.202 17 H -0.187 1.187 18 H -0.214 1.214 19 H -0.185 1.185 20 C 0.008 3.992 21 C -0.232 4.232 22 C -0.231 4.231 23 C -0.184 4.184 24 C -0.113 4.113 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.140 0.860 31 H 0.153 0.847 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.002 0.998 35 H 0.001 0.999 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.185 0.815 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.998 -13.722 -19.659 25.607 hybrid contribution 0.467 0.876 1.230 1.581 sum -8.531 -12.846 -18.428 24.029 Atomic orbital electron populations 1.21736 0.94331 1.02317 1.01742 1.20522 0.96419 0.91107 1.03474 1.20169 1.00950 0.97738 0.92687 1.21106 0.98896 0.93827 0.98746 1.22300 1.02846 0.96836 0.99556 1.18201 0.97811 0.84468 0.95075 1.45983 1.60478 1.11651 1.08939 1.21713 0.75289 0.91165 0.82218 1.90426 1.52668 1.64928 1.35392 1.21696 1.03183 0.89299 1.01159 1.18679 0.94187 0.95394 0.91033 1.21645 1.43197 0.95466 0.97879 0.90463 1.26140 0.95456 1.03659 0.95100 1.70171 1.46641 1.38529 1.02381 0.85369 0.79180 0.78375 0.77309 1.18661 1.21374 1.18537 1.21782 0.98506 0.96893 0.82044 1.22466 0.97614 1.02703 1.00403 1.22447 0.94528 1.04240 1.01854 1.21567 1.04306 0.95912 0.96606 1.21189 0.98097 0.93585 0.98459 0.93891 0.92318 0.90998 0.89415 0.91287 0.85978 0.84653 0.87566 0.87667 0.99828 0.99947 0.92821 0.87381 0.90646 0.87699 0.93371 0.93104 0.87816 0.90404 0.81527 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.89 71.98 0.71 -1.35 16 2 C -0.08 -1.25 6.06 29.85 0.18 -1.07 16 3 C -0.11 -2.58 5.14 -19.84 -0.10 -2.68 16 4 C -0.11 -3.12 9.69 22.25 0.22 -2.91 16 5 C -0.20 -7.04 8.96 22.39 0.20 -6.84 16 6 C 0.14 4.35 6.06 38.15 0.23 4.59 16 7 N -0.55 -17.44 2.62 -608.86 -1.60 -19.04 16 8 C 0.50 20.93 7.56 87.66 0.66 21.59 16 9 O -0.56 -28.03 12.51 -3.04 -0.04 -28.07 16 10 C -0.11 -4.71 4.04 29.85 0.12 -4.59 16 11 C 0.04 2.52 4.28 29.85 0.13 2.64 16 12 C -0.54 -31.01 9.11 25.60 0.23 -30.77 16 13 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 14 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 15 N -0.94 -59.81 13.29 21.45 0.28 -59.52 16 16 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 18 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 20 C 0.11 2.38 3.04 45.00 0.14 2.52 16 21 C -0.17 -3.03 9.06 71.98 0.65 -2.38 16 22 C -0.17 -2.89 8.93 71.98 0.64 -2.25 16 23 C -0.16 -3.72 6.66 22.39 0.15 -3.57 16 24 C -0.10 -1.89 9.69 22.25 0.22 -1.67 16 25 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.09 1.07 8.08 -2.39 -0.02 1.05 16 29 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 30 H 0.12 3.29 8.06 -2.91 -0.02 3.26 16 31 H 0.14 5.99 4.76 -42.11 -0.20 5.79 16 32 H 0.11 3.82 7.37 -2.39 -0.02 3.80 16 33 H 0.11 3.88 8.09 -2.38 -0.02 3.86 16 34 H -0.02 -1.07 8.05 -2.39 -0.02 -1.09 16 35 H -0.02 -1.14 8.14 -2.38 -0.02 -1.16 16 36 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 37 H 0.11 2.33 5.78 -2.39 -0.01 2.32 16 38 H 0.07 1.27 4.82 -2.39 -0.01 1.26 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.28 4.59 -2.39 -0.01 1.27 16 44 H 0.17 2.79 3.58 -2.91 -0.01 2.78 16 45 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -77.06 353.40 6.30 -70.76 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.78 Total: 18.21 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 4.84 Total: -28.62 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -1.31 Total: -78.56 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.04 Total: -28.07 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -77.06 6.30 -70.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291589520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.587 kcal (2) G-P(sol) polarization free energy of solvation -77.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds