Wall clock time and date at job start Tue Mar 31 2020 06:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46500 * 109.46998 * 299.99786 * 4 2 1 6 6 C 1.34769 * 120.00237 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99855 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00461 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47218 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.46861 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.37884 * 120.00200 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99570 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00031 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47227 * 90.00066 * 14 12 10 16 16 H 1.48500 * 109.46628 * 209.99752 * 14 12 10 17 17 H 1.48493 * 109.47109 * 329.99411 * 14 12 10 18 18 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 19 19 C 1.50706 * 109.46953 * 60.00071 * 18 2 1 20 20 C 1.38231 * 119.99890 * 269.72761 * 19 18 2 21 21 C 1.38243 * 119.99932 * 179.76127 * 20 19 18 22 22 C 1.38235 * 119.99614 * 0.51210 * 21 20 19 23 23 C 1.38238 * 120.00119 * 359.74635 * 22 21 20 24 24 C 1.38234 * 120.00044 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 0.97003 * 119.99531 * 359.97438 * 5 4 2 34 34 H 1.08996 * 109.47077 * 300.00146 * 8 6 5 35 35 H 1.09004 * 109.46818 * 59.99313 * 8 6 5 36 36 H 1.09000 * 109.47380 * 299.99442 * 9 8 6 37 37 H 1.08996 * 109.47134 * 60.00532 * 9 8 6 38 38 H 0.97002 * 119.99804 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.47486 * 180.02562 * 18 2 1 40 40 H 1.09001 * 109.47362 * 300.00732 * 18 2 1 41 41 H 1.08006 * 120.00368 * 0.02562 * 20 19 18 42 42 H 1.07997 * 120.00078 * 180.23244 * 21 20 19 43 43 H 1.08001 * 120.00016 * 179.71719 * 22 21 20 44 44 H 1.08003 * 119.99866 * 179.97438 * 23 22 21 45 45 H 1.07997 * 119.99975 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.5517 -0.0308 2.4454 6 6 1.8777 -0.4909 3.6695 7 8 2.5749 -1.4770 3.7807 8 6 1.3749 0.2191 4.9000 9 6 1.8850 -0.5021 6.1492 10 6 1.3827 0.2083 7.3796 11 1 0.7621 1.0867 7.2805 12 6 1.7163 -0.2624 8.6320 13 7 2.4724 -1.3317 8.7526 14 14 1.0931 0.6178 10.1572 15 1 -0.2146 0.0419 10.5615 16 1 2.0715 0.4478 11.2612 17 1 0.9271 2.0635 9.8612 18 6 2.0400 -0.7213 -1.2492 19 6 1.5377 -0.0108 -2.4797 20 6 0.3326 -0.3800 -3.0473 21 6 -0.1306 0.2750 -4.1732 22 6 0.6165 1.2920 -4.7375 23 6 1.8242 1.6575 -4.1729 24 6 2.2846 1.0064 -3.0438 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 0.9943 0.7581 2.3564 34 1 1.7374 1.2470 4.9000 35 1 0.2849 0.2184 4.9000 36 1 1.5220 -1.5299 6.1491 37 1 2.9749 -0.5016 6.1494 38 1 2.7074 -1.6626 9.6336 39 1 3.1300 -0.7217 -1.2490 40 1 1.6766 -1.7489 -1.2493 41 1 -0.2493 -1.1773 -2.6088 42 1 -1.0740 -0.0109 -4.6145 43 1 0.2569 1.8006 -5.6197 44 1 2.4081 2.4518 -4.6141 45 1 3.2283 1.2918 -2.6030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291744209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:22 Heat of formation + Delta-G solvation = -44.524727 kcal Electronic energy + Delta-G solvation = -22279.147443 eV Core-core repulsion = 19067.205318 eV Total energy + Delta-G solvation = -3211.942125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20628 -39.11035 -37.31780 -33.66862 -33.40406 -31.39407 -31.23954 -30.75162 -27.47001 -27.35854 -26.58012 -24.89990 -22.75344 -21.98177 -21.21875 -19.72729 -19.00696 -16.94010 -16.89896 -15.91765 -15.71341 -15.59199 -15.16391 -15.11670 -14.54620 -14.38369 -14.23997 -13.71800 -13.71446 -13.16403 -12.96234 -12.93193 -12.64335 -12.21298 -12.15335 -11.97002 -11.74738 -11.59673 -11.21774 -11.13383 -11.07575 -10.93838 -10.88949 -10.71434 -10.56435 -9.92502 -9.63227 -9.16854 -9.15427 -9.01609 -8.87503 -8.69528 -8.29737 -5.94000 -3.98222 1.07840 1.12234 3.32554 3.34657 3.40320 3.42915 3.46370 3.67811 4.36768 4.48572 4.49334 4.68557 4.70083 4.71908 4.78230 4.90938 5.14926 5.17108 5.25607 5.40796 5.42456 5.49280 5.52317 5.54685 5.64636 5.69983 5.76913 5.80133 5.82365 5.93536 5.95003 6.13064 6.14060 6.19707 6.24012 6.26852 6.28765 6.39184 6.73013 6.80647 6.93494 7.76926 7.89656 7.95435 8.10030 8.41538 8.84910 9.10694 9.65058 11.16964 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.043959 B = 0.002370 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.806304 B =11813.166670 C =11953.663383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C -0.145 4.145 4 C 0.130 3.870 5 N -0.741 5.741 6 C 0.508 3.492 7 O -0.536 6.536 8 C -0.130 4.130 9 C 0.037 3.963 10 C -0.526 4.526 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.072 4.072 19 C -0.070 4.070 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.128 4.128 23 C -0.121 4.121 24 C -0.115 4.115 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.396 0.604 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.233 5.993 -28.323 29.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.203 4.203 4 C 0.006 3.994 5 N -0.396 5.396 6 C 0.297 3.703 7 O -0.412 6.412 8 C -0.170 4.170 9 C 0.000 4.000 10 C -0.565 4.565 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.528 5.528 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.110 4.110 19 C -0.070 4.070 20 C -0.133 4.133 21 C -0.139 4.139 22 C -0.146 4.146 23 C -0.139 4.139 24 C -0.133 4.133 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.231 0.769 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.625 5.139 -28.089 28.784 hybrid contribution -0.607 0.844 0.750 1.282 sum -4.233 5.983 -27.339 28.305 Atomic orbital electron populations 1.21969 0.94008 1.02194 1.02090 1.20711 0.96398 0.96107 0.93631 1.21969 1.01215 0.94992 1.02094 1.21258 0.98964 0.95888 0.83303 1.46240 1.55235 1.32561 1.05612 1.21535 0.79554 0.84627 0.84622 1.90665 1.37354 1.26371 1.86801 1.21857 1.01364 1.00367 0.93438 1.18889 0.97096 0.95591 0.88465 1.21233 1.31821 1.12380 0.91040 0.92633 1.25036 0.95202 0.95088 0.99138 1.70002 1.36516 1.22895 1.23435 0.86587 0.78559 0.79960 0.82815 1.20686 1.21238 1.19909 1.20646 1.01086 0.98697 0.90578 1.19812 0.94743 0.96312 0.96158 1.21097 0.95923 1.00208 0.96071 1.21145 0.99819 0.96550 0.96367 1.21129 0.95305 0.97949 1.00189 1.21145 0.96467 0.99951 0.96322 1.21095 1.00002 0.96155 0.96045 0.91999 0.92407 0.92411 0.92414 0.92410 0.91985 0.91854 0.91854 0.76945 0.90359 0.90360 0.95855 0.95851 0.92974 0.90519 0.90523 0.86079 0.86272 0.86402 0.86273 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 7.72 37.16 0.29 -0.97 16 2 C -0.07 -0.61 0.55 -154.51 -0.09 -0.69 16 3 C -0.15 -1.25 7.71 37.15 0.29 -0.97 16 4 C 0.13 1.60 4.56 -4.04 -0.02 1.58 16 5 N -0.74 -10.44 4.96 -60.29 -0.30 -10.74 16 6 C 0.51 9.92 7.83 -10.99 -0.09 9.84 16 7 O -0.54 -12.89 15.98 5.56 0.09 -12.80 16 8 C -0.13 -2.69 5.64 -27.88 -0.16 -2.84 16 9 C 0.04 1.01 4.26 -27.89 -0.12 0.90 16 10 C -0.53 -15.11 9.11 -34.44 -0.31 -15.42 16 11 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 14 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 C -0.07 -0.58 4.46 -27.88 -0.12 -0.71 16 19 C -0.07 -0.57 4.00 -104.62 -0.42 -0.99 16 20 C -0.11 -0.90 7.90 -39.58 -0.31 -1.21 16 21 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 22 C -0.13 -0.92 10.05 -39.58 -0.40 -1.32 16 23 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 24 C -0.11 -0.90 7.88 -39.58 -0.31 -1.21 16 25 H 0.06 0.51 6.19 -51.93 -0.32 0.19 16 26 H 0.06 0.51 6.86 -51.93 -0.36 0.15 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.51 6.86 -51.93 -0.36 0.15 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.51 6.17 -51.93 -0.32 0.19 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.40 4.54 6.16 -40.82 -0.25 4.28 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 40 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 41 H 0.12 0.83 8.04 -52.48 -0.42 0.41 16 42 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 45 H 0.12 0.83 8.03 -52.49 -0.42 0.41 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -34.21 362.07 -9.18 -43.39 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.48 Total: -0.14 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -2.66 Total: -15.02 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.44 Total: -37.72 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.21 -9.18 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291744209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.136 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds