Wall clock time and date at job start Tue Mar 31 2020 06:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46500 * 109.46998 * 299.99786 * 4 2 1 6 6 C 1.34769 * 120.00237 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99855 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00461 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47218 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.46861 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.37884 * 120.00200 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99570 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00031 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47227 * 90.00066 * 14 12 10 16 16 H 1.48500 * 109.46628 * 209.99752 * 14 12 10 17 17 H 1.48493 * 109.47109 * 329.99411 * 14 12 10 18 18 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 19 19 C 1.50706 * 109.46953 * 60.00071 * 18 2 1 20 20 C 1.38231 * 119.99890 * 269.72761 * 19 18 2 21 21 C 1.38243 * 119.99932 * 179.76127 * 20 19 18 22 22 C 1.38235 * 119.99614 * 0.51210 * 21 20 19 23 23 C 1.38238 * 120.00119 * 359.74635 * 22 21 20 24 24 C 1.38234 * 120.00044 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 0.97003 * 119.99531 * 359.97438 * 5 4 2 34 34 H 1.08996 * 109.47077 * 300.00146 * 8 6 5 35 35 H 1.09004 * 109.46818 * 59.99313 * 8 6 5 36 36 H 1.09000 * 109.47380 * 299.99442 * 9 8 6 37 37 H 1.08996 * 109.47134 * 60.00532 * 9 8 6 38 38 H 0.97002 * 119.99804 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.47486 * 180.02562 * 18 2 1 40 40 H 1.09001 * 109.47362 * 300.00732 * 18 2 1 41 41 H 1.08006 * 120.00368 * 0.02562 * 20 19 18 42 42 H 1.07997 * 120.00078 * 180.23244 * 21 20 19 43 43 H 1.08001 * 120.00016 * 179.71719 * 22 21 20 44 44 H 1.08003 * 119.99866 * 179.97438 * 23 22 21 45 45 H 1.07997 * 119.99975 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.5517 -0.0308 2.4454 6 6 1.8777 -0.4909 3.6695 7 8 2.5749 -1.4770 3.7807 8 6 1.3749 0.2191 4.9000 9 6 1.8850 -0.5021 6.1492 10 6 1.3827 0.2083 7.3796 11 1 0.7621 1.0867 7.2805 12 6 1.7163 -0.2624 8.6320 13 7 2.4724 -1.3317 8.7526 14 14 1.0931 0.6178 10.1572 15 1 -0.2146 0.0419 10.5615 16 1 2.0715 0.4478 11.2612 17 1 0.9271 2.0635 9.8612 18 6 2.0400 -0.7213 -1.2492 19 6 1.5377 -0.0108 -2.4797 20 6 0.3326 -0.3800 -3.0473 21 6 -0.1306 0.2750 -4.1732 22 6 0.6165 1.2920 -4.7375 23 6 1.8242 1.6575 -4.1729 24 6 2.2846 1.0064 -3.0438 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 0.9943 0.7581 2.3564 34 1 1.7374 1.2470 4.9000 35 1 0.2849 0.2184 4.9000 36 1 1.5220 -1.5299 6.1491 37 1 2.9749 -0.5016 6.1494 38 1 2.7074 -1.6626 9.6336 39 1 3.1300 -0.7217 -1.2490 40 1 1.6766 -1.7489 -1.2493 41 1 -0.2493 -1.1773 -2.6088 42 1 -1.0740 -0.0109 -4.6145 43 1 0.2569 1.8006 -5.6197 44 1 2.4081 2.4518 -4.6141 45 1 3.2283 1.2918 -2.6030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291744209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:21 Heat of formation + Delta-G solvation = -64.492971 kcal Electronic energy + Delta-G solvation = -22280.013331 eV Core-core repulsion = 19067.205318 eV Total energy + Delta-G solvation = -3212.808013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.08905 -40.30135 -38.26455 -35.56543 -34.83217 -33.00895 -31.90403 -31.77559 -28.46551 -28.16539 -27.78909 -26.41203 -23.56669 -23.29372 -22.19073 -21.22973 -19.87615 -18.79754 -17.52766 -17.49583 -16.93579 -16.69121 -16.41932 -16.10155 -15.85603 -15.46132 -15.34356 -14.76670 -14.35836 -14.32700 -14.17155 -14.13670 -13.67913 -13.42027 -13.30630 -13.18771 -12.82298 -12.72316 -12.60092 -12.47619 -12.22253 -11.91121 -11.79093 -11.78411 -11.64307 -11.64118 -11.45625 -11.29912 -10.71592 -10.56640 -10.02223 -9.71719 -9.49451 -8.17570 -6.31637 0.51758 0.57424 1.42276 1.45228 1.56148 1.74719 2.29397 2.46135 2.95076 3.15232 3.60122 3.79313 3.95013 4.06647 4.10377 4.18034 4.23967 4.37822 4.42675 4.48227 4.52215 4.56884 4.71010 4.72720 4.75954 4.86508 4.89187 4.90911 5.04294 5.07449 5.11817 5.14101 5.24381 5.28458 5.40074 5.42743 5.48094 5.55378 5.64137 5.65730 5.70709 5.81344 5.86215 6.18326 6.20027 6.63140 6.87005 7.37048 7.39227 8.95131 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.043959 B = 0.002370 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.806304 B =11813.166670 C =11953.663383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.144 4.144 4 C 0.129 3.871 5 N -0.714 5.714 6 C 0.510 3.490 7 O -0.591 6.591 8 C -0.120 4.120 9 C 0.042 3.958 10 C -0.543 4.543 11 H 0.076 0.924 12 C -0.009 4.009 13 N -0.938 5.938 14 Si 0.975 3.025 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.255 1.255 18 C -0.070 4.070 19 C -0.078 4.078 20 C -0.125 4.125 21 C -0.129 4.129 22 C -0.134 4.134 23 C -0.129 4.129 24 C -0.125 4.125 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.413 0.587 34 H 0.103 0.897 35 H 0.103 0.897 36 H -0.019 1.019 37 H -0.018 1.018 38 H 0.263 0.737 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 8.303 -29.395 31.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.055 4.055 3 C -0.201 4.201 4 C 0.005 3.995 5 N -0.368 5.368 6 C 0.298 3.702 7 O -0.471 6.471 8 C -0.160 4.160 9 C 0.005 3.995 10 C -0.580 4.580 11 H 0.094 0.906 12 C -0.206 4.206 13 N -0.578 5.578 14 Si 0.799 3.201 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.179 1.179 18 C -0.107 4.107 19 C -0.078 4.078 20 C -0.143 4.143 21 C -0.147 4.147 22 C -0.152 4.152 23 C -0.147 4.147 24 C -0.142 4.142 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.251 0.749 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.000 1.000 37 H 0.000 1.000 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.153 0.847 44 H 0.152 0.848 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.295 7.502 -29.218 30.627 hybrid contribution -0.087 0.106 0.975 0.985 sum -5.382 7.608 -28.243 29.741 Atomic orbital electron populations 1.21962 0.93387 1.02291 1.02468 1.20593 0.96719 0.96077 0.92147 1.21962 1.01195 0.94486 1.02473 1.21394 0.98508 0.95837 0.83763 1.45942 1.53918 1.32458 1.04522 1.21310 0.79073 0.83872 0.85936 1.90652 1.40045 1.28787 1.87643 1.21636 1.02691 1.00620 0.91033 1.18681 0.94482 0.94304 0.92080 1.21723 1.31798 1.12917 0.91608 0.90587 1.26166 0.95232 0.95836 1.03384 1.70184 1.38184 1.24967 1.24463 0.85302 0.77896 0.79345 0.77582 1.19688 1.21199 1.17885 1.20600 1.01159 0.98694 0.90283 1.19801 0.95113 0.96676 0.96242 1.21253 0.96000 1.00551 0.96449 1.21401 1.00525 0.96509 0.96247 1.21419 0.95221 0.97889 1.00689 1.21401 0.96790 1.00293 0.96203 1.21250 1.00323 0.96250 0.96425 0.91215 0.92379 0.92520 0.92387 0.92519 0.91198 0.92790 0.92789 0.74901 0.87846 0.87835 1.00010 1.00004 0.92872 0.90441 0.90445 0.85512 0.84782 0.84709 0.84782 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 7.72 71.98 0.56 -1.66 16 2 C -0.05 -0.91 0.55 -52.18 -0.03 -0.94 16 3 C -0.14 -2.21 7.71 71.98 0.55 -1.66 16 4 C 0.13 3.10 4.56 86.38 0.39 3.50 16 5 N -0.71 -19.35 4.96 -463.06 -2.30 -21.65 16 6 C 0.51 19.99 7.83 87.66 0.69 20.68 16 7 O -0.59 -29.58 15.98 -3.04 -0.05 -29.63 16 8 C -0.12 -4.88 5.64 29.85 0.17 -4.71 16 9 C 0.04 2.39 4.26 29.85 0.13 2.51 16 10 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 11 H 0.08 3.97 7.74 -2.91 -0.02 3.94 16 12 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 13 N -0.94 -60.14 13.29 21.45 0.28 -59.85 16 14 Si 0.98 44.62 29.54 68.60 2.03 46.65 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 16 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 18 C -0.07 -1.05 4.46 29.85 0.13 -0.92 16 19 C -0.08 -1.15 4.00 -19.86 -0.08 -1.23 16 20 C -0.12 -1.75 7.90 22.27 0.18 -1.58 16 21 C -0.13 -1.66 10.05 22.27 0.22 -1.43 16 22 C -0.13 -1.66 10.05 22.27 0.22 -1.43 16 23 C -0.13 -1.66 10.05 22.27 0.22 -1.43 16 24 C -0.12 -1.75 7.88 22.27 0.18 -1.58 16 25 H 0.07 1.00 6.19 -2.39 -0.01 0.98 16 26 H 0.06 0.88 6.86 -2.39 -0.02 0.87 16 27 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.06 0.88 6.86 -2.39 -0.02 0.87 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.00 6.17 -2.39 -0.01 0.98 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.41 8.49 6.16 -92.71 -0.57 7.92 16 34 H 0.10 3.68 8.14 -2.39 -0.02 3.67 16 35 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 36 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 37 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 38 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 39 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 40 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 41 H 0.13 1.56 8.04 -2.91 -0.02 1.54 16 42 H 0.13 1.23 8.06 -2.91 -0.02 1.21 16 43 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 44 H 0.13 1.23 8.06 -2.91 -0.02 1.21 16 45 H 0.13 1.56 8.03 -2.91 -0.02 1.54 16 Total: -1.00 -76.68 362.07 4.58 -72.11 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.38 Total: 15.28 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 4.23 Total: -22.91 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -2.01 Total: -81.50 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.05 Total: -29.63 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -76.68 4.58 -72.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291744209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.612 kcal (2) G-P(sol) polarization free energy of solvation -76.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds