Wall clock time and date at job start Tue Mar 31 2020 06:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 6 6 H 1.08996 * 109.47747 * 179.97438 * 5 2 1 7 7 N 1.46496 * 109.47337 * 300.00145 * 5 2 1 8 8 C 1.34773 * 120.00280 * 275.00076 * 7 5 2 9 9 O 1.21287 * 119.99835 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00570 * 179.97438 * 8 7 5 11 11 C 1.52998 * 109.47760 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47596 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00070 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99802 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00509 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99475 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47488 * 90.00347 * 16 14 12 18 18 H 1.48500 * 109.47008 * 209.99954 * 16 14 12 19 19 H 1.48499 * 109.47502 * 330.00121 * 16 14 12 20 20 C 1.50708 * 109.47025 * 59.99816 * 5 2 1 21 21 C 1.38224 * 120.00212 * 279.72942 * 20 5 2 22 22 C 1.38237 * 120.00452 * 179.80911 * 21 20 5 23 23 C 1.38237 * 119.99511 * 0.39885 * 22 21 20 24 24 C 1.38240 * 119.99999 * 359.85263 * 23 22 21 25 25 C 1.38230 * 120.00099 * 359.96253 * 24 23 22 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 35 35 H 0.97000 * 120.00167 * 94.99384 * 7 5 2 36 36 H 1.09007 * 109.46783 * 299.99641 * 10 8 7 37 37 H 1.09002 * 109.47161 * 59.99234 * 10 8 7 38 38 H 1.09007 * 109.46716 * 299.99727 * 11 10 8 39 39 H 1.09002 * 109.47372 * 59.99408 * 11 10 8 40 40 H 0.96996 * 120.00192 * 180.02562 * 15 14 12 41 41 H 1.08000 * 120.00265 * 359.97438 * 21 20 5 42 42 H 1.07995 * 120.00851 * 180.23101 * 22 21 20 43 43 H 1.07999 * 120.00054 * 179.83800 * 23 22 21 44 44 H 1.08001 * 120.00172 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.00311 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0400 -0.7213 -1.2491 6 1 3.1300 -0.7209 -1.2494 7 7 1.5518 -2.1025 -1.2491 8 6 2.2285 -3.0565 -0.5796 9 8 3.2420 -2.7716 0.0226 10 6 1.7259 -4.4772 -0.5791 11 6 2.6703 -5.3521 0.2478 12 6 2.1674 -6.7726 0.2488 13 1 1.2647 -7.0263 -0.2871 14 6 2.8603 -7.7487 0.9330 15 7 3.9598 -7.4400 1.5851 16 14 2.2372 -9.5097 0.9336 17 1 2.8280 -10.2443 -0.2138 18 1 2.6312 -10.1738 2.2021 19 1 0.7571 -9.5113 0.8130 20 6 1.5377 -0.0109 -2.4797 21 6 0.2486 -0.2315 -2.9273 22 6 -0.2135 0.4230 -4.0537 23 6 0.6163 1.2919 -4.7374 24 6 1.9072 1.5086 -4.2927 25 6 2.3680 0.8570 -3.1641 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 -1.7488 1.2493 33 1 3.1300 -0.7207 1.2495 34 1 1.6766 -0.2073 2.1393 35 1 0.7413 -2.3304 -1.7309 36 1 0.7268 -4.5090 -0.1444 37 1 1.6888 -4.8498 -1.6027 38 1 3.6693 -5.3202 -0.1873 39 1 2.7078 -4.9795 1.2715 40 1 4.4474 -8.1268 2.0661 41 1 -0.3985 -0.9132 -2.3954 42 1 -1.2219 0.2536 -4.4013 43 1 0.2562 1.8014 -5.6189 44 1 2.5557 2.1871 -4.8270 45 1 3.3766 1.0259 -2.8170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292242354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:36 Heat of formation + Delta-G solvation = -34.473909 kcal Electronic energy + Delta-G solvation = -23428.465902 eV Core-core repulsion = 20216.959613 eV Total energy + Delta-G solvation = -3211.506288 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.61855 -38.79714 -36.86015 -33.48741 -33.41957 -31.43396 -31.12770 -30.69799 -27.34059 -26.95977 -26.55875 -25.01503 -22.78559 -21.84340 -21.32356 -19.61848 -18.74972 -17.34690 -16.67668 -15.84598 -15.76569 -15.62403 -15.15789 -14.74641 -14.42010 -14.12704 -13.94080 -13.66223 -13.41041 -13.13775 -12.69403 -12.50065 -12.34637 -12.17623 -12.09029 -11.78340 -11.53395 -11.46883 -11.15612 -11.10155 -11.07179 -10.91372 -10.63061 -10.58978 -10.43065 -9.92186 -9.62352 -9.16162 -9.07520 -9.05458 -8.82443 -8.61655 -8.30138 -5.94511 -3.98671 1.15117 1.21446 3.29797 3.34304 3.40158 3.42583 3.49905 3.71320 4.47939 4.48991 4.69748 4.78384 4.86065 4.90993 4.97958 5.11225 5.29882 5.35166 5.40477 5.44375 5.60864 5.61587 5.74736 5.77759 5.80126 5.82006 5.93575 5.99886 6.08805 6.13884 6.24082 6.25715 6.26396 6.30349 6.32324 6.37061 6.44797 6.70063 6.80254 6.84472 6.92384 7.76344 7.88992 7.93462 8.09260 8.41100 8.83978 9.10148 9.64755 11.16376 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023090 B = 0.003519 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.347441 B = 7955.651701 C = 8504.959463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.134 4.134 5 C 0.193 3.807 6 H 0.093 0.907 7 N -0.736 5.736 8 C 0.511 3.489 9 O -0.528 6.528 10 C -0.131 4.131 11 C 0.039 3.961 12 C -0.527 4.527 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.078 4.078 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.108 4.108 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.395 0.605 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.260 0.740 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 20.443 -10.160 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 C -0.198 4.198 4 C -0.191 4.191 5 C 0.088 3.912 6 H 0.111 0.889 7 N -0.390 5.390 8 C 0.300 3.700 9 O -0.403 6.403 10 C -0.171 4.171 11 C 0.001 3.999 12 C -0.565 4.565 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.079 4.079 21 C -0.131 4.131 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.137 4.137 25 C -0.126 4.126 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.229 0.771 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.753 20.541 -9.584 23.956 hybrid contribution -0.725 -1.070 -0.255 1.317 sum -8.478 19.470 -9.839 23.405 Atomic orbital electron populations 1.22018 0.94787 1.01865 1.01634 1.20875 0.95871 0.95294 0.95269 1.21870 1.01072 0.95174 1.01641 1.21916 1.01916 1.00331 0.94927 1.19799 0.99518 0.81184 0.90680 0.88896 1.46315 1.29829 1.07589 1.55270 1.21457 0.83591 0.87842 0.77131 1.90673 1.24695 1.82699 1.42203 1.21873 1.02229 0.89888 1.03106 1.18879 0.93824 0.92202 0.94983 1.21229 1.09911 0.93450 1.31922 0.92677 1.25018 0.94978 0.98925 0.95438 1.69993 1.16510 1.33430 1.32884 0.86606 0.79070 0.84965 0.77392 1.20693 1.21241 1.19901 1.19959 0.94314 0.97487 0.96093 1.21015 0.95394 1.00021 0.96640 1.21125 0.99809 0.97186 0.95603 1.21141 0.94277 0.98872 0.99948 1.21120 0.96036 0.99891 0.96658 1.21033 0.99589 0.96768 0.95245 0.92454 0.92236 0.92897 0.92631 0.92582 0.92549 0.92013 0.91765 0.93741 0.77071 0.90420 0.90399 0.95861 0.95816 0.92981 0.85895 0.86084 0.86290 0.86108 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 7.25 37.16 0.27 -1.29 16 2 C -0.07 -0.87 0.62 -154.51 -0.10 -0.96 16 3 C -0.14 -1.46 8.07 37.16 0.30 -1.16 16 4 C -0.13 -1.99 7.00 37.16 0.26 -1.73 16 5 C 0.19 2.48 1.81 -69.08 -0.13 2.35 16 6 H 0.09 1.39 7.44 -51.93 -0.39 1.00 16 7 N -0.74 -10.32 4.15 -54.94 -0.23 -10.54 16 8 C 0.51 9.56 6.18 -10.99 -0.07 9.50 16 9 O -0.53 -11.80 13.11 5.55 0.07 -11.73 16 10 C -0.13 -2.65 5.64 -27.89 -0.16 -2.81 16 11 C 0.04 1.04 4.26 -27.89 -0.12 0.92 16 12 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.49 13.29 55.43 0.74 -26.76 16 16 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 C -0.08 -0.84 3.79 -104.62 -0.40 -1.24 16 21 C -0.11 -1.08 6.85 -39.59 -0.27 -1.35 16 22 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 23 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 24 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 25 C -0.11 -1.08 8.71 -39.58 -0.34 -1.43 16 26 H 0.06 0.63 7.61 -51.93 -0.39 0.24 16 27 H 0.06 0.58 5.62 -51.93 -0.29 0.29 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.55 6.64 -51.93 -0.34 0.21 16 32 H 0.06 1.07 5.78 -51.93 -0.30 0.77 16 33 H 0.06 1.06 7.53 -51.93 -0.39 0.67 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.39 4.59 6.85 -40.82 -0.28 4.31 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.12 1.06 6.10 -52.49 -0.32 0.74 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.12 1.13 8.04 -52.49 -0.42 0.71 16 LS Contribution 353.15 15.07 5.32 5.32 Total: -1.00 -32.86 353.15 -8.79 -41.65 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.32 Total: 2.54 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -2.35 Total: -17.22 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.51 Total: -37.30 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.07 Total: -11.73 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.86 -8.79 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292242354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.172 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds