Wall clock time and date at job start Tue Mar 31 2020 06:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 6 6 H 1.08996 * 109.47747 * 179.97438 * 5 2 1 7 7 N 1.46496 * 109.47337 * 300.00145 * 5 2 1 8 8 C 1.34773 * 120.00280 * 275.00076 * 7 5 2 9 9 O 1.21287 * 119.99835 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00570 * 179.97438 * 8 7 5 11 11 C 1.52998 * 109.47760 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47596 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00070 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99802 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00509 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99475 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47488 * 90.00347 * 16 14 12 18 18 H 1.48500 * 109.47008 * 209.99954 * 16 14 12 19 19 H 1.48499 * 109.47502 * 330.00121 * 16 14 12 20 20 C 1.50708 * 109.47025 * 59.99816 * 5 2 1 21 21 C 1.38224 * 120.00212 * 279.72942 * 20 5 2 22 22 C 1.38237 * 120.00452 * 179.80911 * 21 20 5 23 23 C 1.38237 * 119.99511 * 0.39885 * 22 21 20 24 24 C 1.38240 * 119.99999 * 359.85263 * 23 22 21 25 25 C 1.38230 * 120.00099 * 359.96253 * 24 23 22 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 35 35 H 0.97000 * 120.00167 * 94.99384 * 7 5 2 36 36 H 1.09007 * 109.46783 * 299.99641 * 10 8 7 37 37 H 1.09002 * 109.47161 * 59.99234 * 10 8 7 38 38 H 1.09007 * 109.46716 * 299.99727 * 11 10 8 39 39 H 1.09002 * 109.47372 * 59.99408 * 11 10 8 40 40 H 0.96996 * 120.00192 * 180.02562 * 15 14 12 41 41 H 1.08000 * 120.00265 * 359.97438 * 21 20 5 42 42 H 1.07995 * 120.00851 * 180.23101 * 22 21 20 43 43 H 1.07999 * 120.00054 * 179.83800 * 23 22 21 44 44 H 1.08001 * 120.00172 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.00311 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0400 -0.7213 -1.2491 6 1 3.1300 -0.7209 -1.2494 7 7 1.5518 -2.1025 -1.2491 8 6 2.2285 -3.0565 -0.5796 9 8 3.2420 -2.7716 0.0226 10 6 1.7259 -4.4772 -0.5791 11 6 2.6703 -5.3521 0.2478 12 6 2.1674 -6.7726 0.2488 13 1 1.2647 -7.0263 -0.2871 14 6 2.8603 -7.7487 0.9330 15 7 3.9598 -7.4400 1.5851 16 14 2.2372 -9.5097 0.9336 17 1 2.8280 -10.2443 -0.2138 18 1 2.6312 -10.1738 2.2021 19 1 0.7571 -9.5113 0.8130 20 6 1.5377 -0.0109 -2.4797 21 6 0.2486 -0.2315 -2.9273 22 6 -0.2135 0.4230 -4.0537 23 6 0.6163 1.2919 -4.7374 24 6 1.9072 1.5086 -4.2927 25 6 2.3680 0.8570 -3.1641 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 -1.7488 1.2493 33 1 3.1300 -0.7207 1.2495 34 1 1.6766 -0.2073 2.1393 35 1 0.7413 -2.3304 -1.7309 36 1 0.7268 -4.5090 -0.1444 37 1 1.6888 -4.8498 -1.6027 38 1 3.6693 -5.3202 -0.1873 39 1 2.7078 -4.9795 1.2715 40 1 4.4474 -8.1268 2.0661 41 1 -0.3985 -0.9132 -2.3954 42 1 -1.2219 0.2536 -4.4013 43 1 0.2562 1.8014 -5.6189 44 1 2.5557 2.1871 -4.8270 45 1 3.3766 1.0259 -2.8170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292242354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:36 Heat of formation + Delta-G solvation = -53.506587 kcal Electronic energy + Delta-G solvation = -23429.291220 eV Core-core repulsion = 20216.959613 eV Total energy + Delta-G solvation = -3212.331607 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.69969 -39.94480 -37.93737 -35.54108 -34.74897 -32.97835 -32.08152 -31.77555 -28.31925 -28.17058 -27.91103 -26.53840 -23.79343 -23.25129 -22.34198 -21.11794 -19.78265 -18.86941 -18.05799 -17.36885 -16.99035 -16.68745 -16.43862 -16.08291 -15.78318 -15.23345 -14.97156 -14.85782 -14.44304 -14.22463 -14.08053 -14.03208 -13.48937 -13.38926 -13.21350 -13.03723 -12.85489 -12.76798 -12.55323 -12.48250 -12.35722 -12.06868 -11.90676 -11.82490 -11.67132 -11.63394 -11.40218 -11.28108 -10.65523 -10.56428 -9.99225 -9.74771 -9.57017 -8.17668 -6.31595 0.42679 0.53159 1.41726 1.44459 1.55360 1.78489 2.28014 2.45411 2.91685 3.15248 3.56409 3.82339 3.91240 4.04790 4.12796 4.16348 4.18987 4.34864 4.47498 4.53503 4.54682 4.59691 4.67418 4.75079 4.76541 4.83145 4.91434 5.01900 5.03782 5.05422 5.10084 5.18119 5.19480 5.27900 5.41573 5.47603 5.48581 5.52514 5.60442 5.64859 5.66622 5.76893 5.86466 6.13034 6.18680 6.63975 6.86993 7.38050 7.41585 8.94863 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023090 B = 0.003519 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.347441 B = 7955.651701 C = 8504.959463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C -0.134 4.134 4 C -0.129 4.129 5 C 0.196 3.804 6 H 0.064 0.936 7 N -0.713 5.713 8 C 0.514 3.486 9 O -0.574 6.574 10 C -0.121 4.121 11 C 0.046 3.954 12 C -0.543 4.543 13 H 0.074 0.926 14 C -0.007 4.007 15 N -0.937 5.937 16 Si 0.973 3.027 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.255 1.255 20 C -0.091 4.091 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.121 4.121 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.036 0.964 34 H 0.057 0.943 35 H 0.410 0.590 36 H 0.101 0.899 37 H 0.099 0.901 38 H -0.019 1.019 39 H -0.017 1.017 40 H 0.262 0.738 41 H 0.132 0.868 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.659 21.097 -12.308 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 C -0.191 4.191 4 C -0.186 4.186 5 C 0.091 3.909 6 H 0.082 0.918 7 N -0.366 5.366 8 C 0.302 3.698 9 O -0.453 6.453 10 C -0.161 4.161 11 C 0.008 3.992 12 C -0.581 4.581 13 H 0.092 0.908 14 C -0.204 4.204 15 N -0.577 5.577 16 Si 0.797 3.203 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.179 1.179 20 C -0.091 4.091 21 C -0.137 4.137 22 C -0.138 4.138 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.139 4.139 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.248 0.752 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.000 1.000 39 H 0.001 0.999 40 H 0.071 0.929 41 H 0.150 0.850 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.809 21.227 -11.775 26.572 hybrid contribution 0.238 -1.190 0.373 1.270 sum -10.572 20.036 -11.402 25.362 Atomic orbital electron populations 1.21978 0.93070 1.01940 1.02783 1.20839 0.97142 0.95770 0.93189 1.21814 1.00670 0.93999 1.02662 1.21841 1.00123 0.99283 0.97369 1.19782 0.98024 0.80364 0.92682 0.91770 1.46019 1.29482 1.07557 1.53556 1.21142 0.83230 0.88132 0.77256 1.90669 1.26858 1.83275 1.44467 1.21639 1.01432 0.89900 1.03105 1.18646 0.93440 0.93561 0.93534 1.21718 1.10477 0.94081 1.31839 0.90759 1.26126 0.95010 1.04457 0.94808 1.70174 1.18248 1.35265 1.34016 0.85336 0.79326 0.78216 0.77458 1.19733 1.21173 1.17901 1.19742 0.95310 0.98430 0.95635 1.21145 0.94831 1.00418 0.97267 1.21429 1.00922 0.96549 0.94911 1.21505 0.93880 0.98351 1.00408 1.21380 0.96755 0.99797 0.96092 1.21141 0.99636 0.97201 0.95971 0.92910 0.90622 0.92196 0.91662 0.93299 0.91337 0.94789 0.94496 0.92446 0.75219 0.88087 0.88247 1.00046 0.99861 0.92892 0.85002 0.83788 0.83878 0.84249 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 7.25 71.98 0.52 -2.23 16 2 C -0.07 -1.63 0.62 -52.18 -0.03 -1.66 16 3 C -0.13 -2.70 8.07 71.98 0.58 -2.12 16 4 C -0.13 -4.03 7.00 71.98 0.50 -3.52 16 5 C 0.20 5.07 1.81 44.25 0.08 5.15 16 6 H 0.06 2.05 7.44 -2.39 -0.02 2.03 16 7 N -0.71 -19.91 4.15 -446.11 -1.85 -21.76 16 8 C 0.51 19.94 6.18 87.66 0.54 20.48 16 9 O -0.57 -27.59 13.11 -3.05 -0.04 -27.63 16 10 C -0.12 -4.94 5.64 29.85 0.17 -4.77 16 11 C 0.05 2.58 4.26 29.85 0.13 2.71 16 12 C -0.54 -31.28 9.11 25.60 0.23 -31.05 16 13 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 14 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 15 N -0.94 -60.02 13.29 21.45 0.28 -59.73 16 16 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 19 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 20 C -0.09 -1.84 3.79 -19.86 -0.08 -1.91 16 21 C -0.12 -1.96 6.85 22.27 0.15 -1.81 16 22 C -0.12 -1.64 10.05 22.27 0.22 -1.42 16 23 C -0.12 -1.62 10.05 22.27 0.22 -1.40 16 24 C -0.12 -1.83 10.05 22.27 0.22 -1.61 16 25 C -0.12 -2.28 8.71 22.27 0.19 -2.08 16 26 H 0.05 1.08 7.61 -2.39 -0.02 1.06 16 27 H 0.07 1.26 5.62 -2.39 -0.01 1.24 16 28 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.23 6.64 -2.39 -0.02 1.21 16 32 H 0.03 1.23 5.78 -2.39 -0.01 1.21 16 33 H 0.04 1.32 7.53 -2.39 -0.02 1.30 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.41 8.89 6.85 -92.71 -0.64 8.26 16 36 H 0.10 3.64 8.14 -2.38 -0.02 3.62 16 37 H 0.10 3.62 8.14 -2.39 -0.02 3.61 16 38 H -0.02 -1.21 8.10 -2.38 -0.02 -1.23 16 39 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 40 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 41 H 0.13 1.87 6.10 -2.91 -0.02 1.86 16 42 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 44 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 45 H 0.12 2.22 8.04 -2.91 -0.02 2.20 16 Total: -1.00 -75.41 353.15 4.88 -70.53 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.33 Total: 19.04 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 4.13 Total: -27.18 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -1.57 Total: -81.50 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.04 Total: -27.63 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -75.41 4.88 -70.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292242354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.025 kcal (2) G-P(sol) polarization free energy of solvation -75.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds