Wall clock time and date at job start Tue Mar 31 2020 06:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47098 * 2 1 4 4 C 1.52997 * 109.47104 * 240.00554 * 2 1 3 5 5 C 1.53004 * 109.47522 * 120.00128 * 2 1 3 6 6 H 1.08997 * 109.46796 * 300.00122 * 5 2 1 7 7 N 1.46499 * 109.47267 * 180.02562 * 5 2 1 8 8 C 1.34779 * 119.99898 * 85.00116 * 7 5 2 9 9 O 1.21283 * 119.99761 * 359.97438 * 8 7 5 10 10 C 1.50701 * 119.99936 * 180.02562 * 8 7 5 11 11 C 1.52995 * 109.47231 * 180.02562 * 10 8 7 12 12 C 1.50694 * 109.47418 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99960 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00351 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99541 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00100 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47207 * 59.99823 * 16 14 12 18 18 H 1.48496 * 109.47151 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47114 * 300.00199 * 16 14 12 20 20 C 1.50696 * 109.47005 * 59.99771 * 5 2 1 21 21 C 1.38230 * 120.00309 * 260.00219 * 20 5 2 22 22 C 1.38235 * 120.00326 * 179.97438 * 21 20 5 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38240 * 120.00061 * 0.07178 * 23 22 21 25 25 C 1.38234 * 120.00081 * 359.88514 * 24 23 22 26 26 H 1.09008 * 109.47021 * 299.99608 * 1 2 3 27 27 H 1.08993 * 109.47478 * 59.99759 * 1 2 3 28 28 H 1.09001 * 109.46781 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46946 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46978 * 300.00542 * 3 2 1 31 31 H 1.09008 * 109.46865 * 60.00296 * 3 2 1 32 32 H 1.09001 * 109.46654 * 299.99284 * 4 2 1 33 33 H 1.08993 * 109.47209 * 59.99522 * 4 2 1 34 34 H 1.09001 * 109.47420 * 180.02562 * 4 2 1 35 35 H 0.96996 * 120.00167 * 265.00440 * 7 5 2 36 36 H 1.08998 * 109.46413 * 300.00000 * 10 8 7 37 37 H 1.08997 * 109.47283 * 59.99895 * 10 8 7 38 38 H 1.09007 * 109.47161 * 299.99939 * 11 10 8 39 39 H 1.09005 * 109.47598 * 59.99364 * 11 10 8 40 40 H 0.97005 * 119.99650 * 179.97438 * 15 14 12 41 41 H 1.08000 * 120.00376 * 359.97438 * 21 20 5 42 42 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 43 43 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 44 44 H 1.08005 * 120.00107 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.00147 * 180.10835 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.6768 -0.2075 2.1392 7 7 3.5051 -0.7207 1.2495 8 6 4.1785 0.3373 1.7431 9 8 3.5715 1.2891 2.1866 10 6 5.6855 0.3382 1.7428 11 6 6.1949 1.6452 2.3535 12 6 7.7018 1.6458 2.3538 13 1 8.2422 0.7985 1.9584 14 6 8.3907 2.7282 2.8589 15 7 7.7326 3.7602 3.3398 16 14 10.2587 2.7291 2.8586 17 1 10.7536 2.6080 1.4637 18 1 10.7531 3.9977 3.4514 19 1 10.7544 1.5821 3.6610 20 6 1.5378 -2.1420 1.2492 21 6 0.4428 -2.4881 2.0187 22 6 -0.0183 -3.7912 2.0183 23 6 0.6153 -4.7483 1.2479 24 6 1.7109 -4.4025 0.4791 25 6 2.1714 -3.0991 0.4788 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8901 32 1 1.6767 -1.7488 -1.2492 33 1 1.6766 -0.2073 -2.1392 34 1 3.1300 -0.7215 -1.2491 35 1 3.9904 -1.4817 0.8944 36 1 6.0492 -0.5037 2.3319 37 1 6.0487 0.2492 0.7190 38 1 5.8310 2.4874 1.7648 39 1 5.8316 1.7338 3.3774 40 1 8.2173 4.5215 3.6955 41 1 -0.0525 -1.7403 2.6203 42 1 -0.8711 -4.0626 2.6229 43 1 0.2553 -5.7666 1.2479 44 1 2.2062 -5.1504 -0.1225 45 1 3.0263 -2.8286 -0.1232 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292242357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:39 Heat of formation + Delta-G solvation = -34.414733 kcal Electronic energy + Delta-G solvation = -23428.509007 eV Core-core repulsion = 20217.005284 eV Total energy + Delta-G solvation = -3211.503722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.61877 -38.79752 -36.85933 -33.48531 -33.41870 -31.43392 -31.12835 -30.69873 -27.34243 -26.95949 -26.55706 -25.01306 -22.78294 -21.84239 -21.32289 -19.61779 -18.75115 -17.34549 -16.67688 -15.84585 -15.76799 -15.62097 -15.15521 -14.74787 -14.42473 -14.12613 -13.94024 -13.66316 -13.40751 -13.13549 -12.69399 -12.50020 -12.34681 -12.17177 -12.09085 -11.78252 -11.53420 -11.46858 -11.15836 -11.09890 -11.07375 -10.89610 -10.63080 -10.60724 -10.43079 -9.91661 -9.62245 -9.16611 -9.07555 -9.05947 -8.82485 -8.61549 -8.29789 -5.94300 -3.98532 1.15109 1.21456 3.29822 3.35502 3.39982 3.41463 3.49826 3.71413 4.48012 4.49089 4.69798 4.78431 4.86069 4.90960 4.97972 5.11216 5.29890 5.35145 5.40574 5.44418 5.60855 5.61615 5.74741 5.77779 5.80169 5.81998 5.93599 5.99865 6.08778 6.13907 6.24134 6.25744 6.26442 6.30375 6.32341 6.37080 6.44826 6.70164 6.80264 6.84486 6.92433 7.76111 7.89079 7.93521 8.09416 8.41198 8.83985 9.10080 9.64797 11.16563 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023101 B = 0.003518 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.797727 B = 7957.329275 C = 8505.827903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C -0.134 4.134 4 C -0.146 4.146 5 C 0.193 3.807 6 H 0.093 0.907 7 N -0.736 5.736 8 C 0.511 3.489 9 O -0.528 6.528 10 C -0.131 4.131 11 C 0.039 3.961 12 C -0.528 4.528 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.078 4.078 21 C -0.108 4.108 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.113 4.113 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.395 0.605 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.377 -16.275 -7.885 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 C -0.191 4.191 4 C -0.203 4.203 5 C 0.088 3.912 6 H 0.111 0.889 7 N -0.390 5.390 8 C 0.300 3.700 9 O -0.403 6.403 10 C -0.171 4.171 11 C 0.001 3.999 12 C -0.566 4.566 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.079 4.079 21 C -0.126 4.126 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.137 4.137 25 C -0.131 4.131 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.229 0.771 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.772 -15.363 -7.458 23.936 hybrid contribution 1.254 -0.392 -0.170 1.325 sum -15.518 -15.756 -7.628 23.393 Atomic orbital electron populations 1.21870 0.94422 1.01640 1.01827 1.20877 0.95439 0.96376 0.94618 1.21918 1.02034 0.93858 1.01284 1.22021 1.01253 1.00253 0.96793 1.19799 0.81299 0.91197 0.98895 0.88898 1.46315 1.05594 1.21556 1.65536 1.21459 0.91439 0.81311 0.75809 1.90672 1.70426 1.34097 1.45070 1.21872 0.88295 1.04202 1.02726 1.18873 0.94774 0.89590 0.96618 1.21195 0.91664 1.02868 1.40872 0.92729 1.25016 0.98331 0.95602 0.95392 1.69987 1.35418 1.06721 1.40699 0.86663 0.85838 0.77239 0.78248 1.20265 1.21299 1.20271 1.19957 0.96086 0.95038 0.96772 1.21031 0.96408 0.96503 0.98690 1.21120 1.00068 0.93185 0.99334 1.21141 0.96398 0.99336 0.97361 1.21127 0.96974 0.96172 0.99456 1.21023 1.00144 0.92944 0.98964 0.92584 0.92625 0.92552 0.92012 0.93737 0.91764 0.92230 0.92891 0.92454 0.77076 0.90400 0.90420 0.95822 0.95864 0.92924 0.85931 0.86107 0.86291 0.86085 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.07 37.16 0.30 -1.16 16 2 C -0.07 -0.87 0.62 -154.51 -0.10 -0.96 16 3 C -0.13 -1.99 7.00 37.16 0.26 -1.73 16 4 C -0.15 -1.56 7.23 37.16 0.27 -1.29 16 5 C 0.19 2.48 1.81 -69.08 -0.13 2.35 16 6 H 0.09 1.39 7.44 -51.93 -0.39 1.00 16 7 N -0.74 -10.32 4.15 -54.93 -0.23 -10.55 16 8 C 0.51 9.57 6.18 -10.98 -0.07 9.50 16 9 O -0.53 -11.80 13.10 5.55 0.07 -11.73 16 10 C -0.13 -2.65 5.64 -27.89 -0.16 -2.81 16 11 C 0.04 1.05 4.26 -27.89 -0.12 0.93 16 12 C -0.53 -15.02 9.11 -34.44 -0.31 -15.34 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 16 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.08 -0.84 3.80 -104.63 -0.40 -1.24 16 21 C -0.11 -1.08 8.71 -39.59 -0.34 -1.43 16 22 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 23 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 24 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 25 C -0.11 -1.08 6.84 -39.58 -0.27 -1.35 16 26 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.55 6.64 -51.93 -0.34 0.21 16 29 H 0.06 1.07 5.77 -51.93 -0.30 0.77 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.06 7.53 -51.92 -0.39 0.67 16 32 H 0.06 0.58 5.59 -51.93 -0.29 0.29 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.63 7.60 -51.93 -0.39 0.24 16 35 H 0.39 4.59 6.88 -40.82 -0.28 4.31 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.12 1.13 8.04 -52.49 -0.42 0.71 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 45 H 0.12 1.06 6.09 -52.49 -0.32 0.74 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -32.84 353.12 -8.79 -41.63 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.32 Total: 2.59 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -2.35 Total: -17.24 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.51 Total: -37.32 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.07 Total: -11.73 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.84 -8.79 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292242357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.216 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds